BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474144
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50110.1 | Symbols: | D-aminoacid aminotransferase-like PLP... 1746 0.0
AT1G50090.1 | Symbols: | D-aminoacid aminotransferase-like PLP... 1190 0.0
> AT1G50110.1 | Symbols: | D-aminoacid aminotransferase-like PLP-dependent
enzymes superfamily protein | chr1:18558017-18560274
REVERSE LENGTH=1312
Length=1312
Score = 1746 bits (945), Expect = 0.0
Identities = 1057/1112 (95%), Gaps = 4/1112 (0%)
Strand=Plus/Plus
Query 19 ATGGCTCCTTCTTCATCACCTCTTCGTACTACTAGTGAAGCAGATGAAAAATATGCGAAT 78
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 56 ATGGCTCCTTCTTCATCACCTCTTCGTACTACAAGTGAAACAGATGAAAAATATGCGAAT 115
Query 79 GTGAAATGGGAAGAGCTTGGATTCGCTCTGACTCCAATAGATTATATGTATGTAGCCAAA 138
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 GTCAAATGGGAAGAGCTTGGATTCGCTCTGACTCCAATAGATTATATGTATGTAGCCAAA 175
Query 139 TGCAAACAAGGAGAGAGCTTTTCACAAGGAAAGATTGTTCCTTATGGCGATATTTCAATT 198
|||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 176 TGCAGACAAGGAGAGAGCTTTACACAAGGGAAGATTGTTCCTTATGGCGACATTTCAATT 235
Query 199 AGCCCTTGTTCTCCGATTCTCAATTATGGTCAGGGACTATTTGAAGGTCTCAAAGCTTAC 258
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 236 AGCCCTTGTTCTCCGATTCTCAATTACGGCCAGGGACTATTTGAAGGTCTCAAAGCTTAC 295
Query 259 AGGACAGAAGACGACCGGATTATTATTTTCCGGCCTGACCAAAACGCTCTTCGTATGCAA 318
|| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 296 AGAACAGAAGACGACCGGATTAGGATTTTCCGGCCTGACCAAAACGCTCTTCGCATGCAA 355
Query 319 ACTGGTGCGGAGAGGCTTTGTATGACACCTCCTTCTCTGGAGCATTTTGTCGAGGCAGTT 378
||||||||||||||||||||||||||||||||| |||| || || |||||||||||||||
Sbjct 356 ACTGGTGCGGAGAGGCTTTGTATGACACCTCCTACTCTAGAACAATTTGTCGAGGCAGTT 415
Query 379 AAGCAAACTGTGCTTGCTAACAAGAAATGGGTTCCTCCTCCGGGTAAAGGAACTTTGTAT 438
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 416 AAGCAAACTGTGCTTGCCAACAAGAAATGGGTTCCTCCTCCGGGTAAAGGAACTCTGTAT 475
Query 439 ATAAGGCCTCTGCTACTAGGGAGTGGTGTTACCCTTGGAGTAGCTCCAGCACCTGAATAC 498
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 476 ATAAGGCCTCTGCTACTAGGGAGTGGTGCTACCCTTGGAGTAGCTCCAGCACCTGAATAC 535
Query 499 ACATTTCTCATATATGCATCTCCCGTAGGAGATTACCATAAGGTAAGCTCAGGCTTGAAC 558
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ACTTTTCTCATATATGCATCTCCCGTAGGAGATTACCATAAGGTAAGCTCAGGCTTGAAC 595
Query 559 CTCAAAGTTGATCATAAGTCCCACCGAGCCCATTCAGGTGGAACGGGTGGTGTCAAGAGC 618
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 596 CTCAAAGTTGATCATAAGTATCACCGAGCCCATTCAGGTGGAACGGGGGGTGTCAAGAGC 655
Query 619 TGCACAAATTATTCTCCCGTTGTGAAATCGTTGCTTGAAGCAAAGTCAGCGGGTTTCTCT 678
|||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 656 TGCACAAACTATTCTCCAGTTGTGAAATCGTTACTCGAAGCAAAGTCAGCGGGTTTCTCT 715
Query 679 GATGTCTTGTTTCTGGACGCGGCAACTGGTAGAAACATCGAAGAGCTTACTGCTTGTAAC 738
|||||| |||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 716 GATGTCCTGTTCCTGGATGCAGCAACTGGTAGAAACATCGAAGAGCTTACTGCTTGTAAC 775
Query 739 ATCTTCATTCTCAAAGGAAACATTGTGTCCACTCCACCAACTTCAGGAACCATTTTACCT 798
||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 776 ATCTTCATTGTCAAGGGAAACATTGTATCCACCCCACCAACTTCAGGAACCATTTTACCT 835
Query 799 GGAGTCACGAGGAAAAGCATAAGCGAGCTAGCTCGTGATATTGGCTACCAGGTTGAAGAA 858
||||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||||||
Sbjct 836 GGAGTCACGAGGAAAAGCATAAGTGAGCTGGCTCATGATATTGGCTACCAGGTCGAAGAA 895
Query 859 CGTGATGTTTCTGTGGATGAGCTACTAGAGGCAGAAGAAGTTTTCTGCACAGGGACTGCA 918
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CGCGATGTATCTGTGGATGAGCTACTAGAGGCAGAAGAAGTTTTCTGCACAGGGACTGCA 955
Query 919 GTGGTCGTTAAAGCTGTTGAAACTGTGACCTTCCATGACAAGAAGGTAAAATACAGGACA 978
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 956 GTGGTCGTTAAAGCTGTTGAAACTGTGACCTTCCATGACAAAAAGGTAAAATACAGGACA 1015
Query 979 GGAGAAGCGGCATTGTCTACGAAGCTTCACTCGATGTTAACCAATATTCAGATGGGGGTT 1038
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1016 GGAGAAGCAGCATTGTCTACGAAGCTTCACTCGATGTTGACCAATATTCAGATGGGAGTT 1075
Query 1039 GTTGAAGATAAGAAAGGTTGGATGGTGGATATCGATCGCT-GTCAAGGTTGAGAA-AAGA 1096
||||||||||||||||||||||||||||| || |||| || ||||||||||| || ||||
Sbjct 1076 GTTGAAGATAAGAAAGGTTGGATGGTGGACATTGATC-CTTGTCAAGGTTGA-AAGAAGA 1133
Query 1097 AGTTTAGAAAGTTGATGATCCTATTTACTCAA 1128
||||||||||| ||||||| |||| |||||||
Sbjct 1134 AGTTTAGAAAGCTGATGATTCTATGTACTCAA 1165
> AT1G50090.1 | Symbols: | D-aminoacid aminotransferase-like PLP-dependent
enzymes superfamily protein | chr1:18554641-18556794
REVERSE LENGTH=1104
Length=1104
Score = 1190 bits (644), Expect = 0.0
Identities = 925/1060 (87%), Gaps = 21/1060 (2%)
Strand=Plus/Plus
Query 25 CCTTCTTCATCACCTCTTCGTACTACTAGTGAAGCAGATGAAAAATATGCGAATGTGAAA 84
|||||||||||||||||| | ||| ||| |||| |||||||| ||||||||||| |||
Sbjct 19 CCTTCTTCATCACCTCTT--T-TTACAAGTAAAGCCGATGAAAAGTATGCGAATGTAAAA 75
Query 85 TGGGAAGAGCTTGGATTCGCTCTGACTCCAATAGATTATATGTATGTAGCCAAATGCAAA 144
||||| ||||| |||||||| ||| ||||| ||||||||||||||| || |||||||||
Sbjct 76 TGGGATGAGCTCGGATTCGCACTGGTTCCAACAGATTATATGTATGTGGCGAAATGCAAA 135
Query 145 CAAGGAGAGAGCTTTTCA-CAAGGAAAGATTGTTCCTTATGGCGATATTTCAATTAGCCC 203
|||||||||||||||||| || ||| |||||||||||||||| |||||||| || |||||
Sbjct 136 CAAGGAGAGAGCTTTTCAACA-GGAGAGATTGTTCCTTATGGGGATATTTCTATAAGCCC 194
Query 204 TTGTTCTCCGATTCTCAATTATGGTCAGGGACTATTTGAAGGTCTCAAAGCTTACAGGAC 263
|||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 195 TTGTGCTGGGATTCTCAATTATGGCCAGGGACTATTTGAAGGTCTCAAGGCTTACAGGAC 254
Query 264 AGAAGACGACCGGATTATTATT-TTCCGGCCTGACCAAAACGCTCTTCGTATGCAAACTG 322
|||||||| ||||| | | | ||||| ||||||||||||||| ||||||||||||| |
Sbjct 255 AGAAGACGGTCGGATCAC-ACTCTTCCGACCTGACCAAAACGCTATTCGTATGCAAACAG 313
Query 323 GTGCGGAGAGGCTTTGTATGACACCTCCTTCTCTGGAGCATTTTGTCGAGGCAGTTAAGC 382
|||| || ||||||||||||||||||||||| | |||||| || || || ||||||||||
Sbjct 314 GTGCAGATAGGCTTTGTATGACACCTCCTTCCCCGGAGCAATTCGTTGAAGCAGTTAAGC 373
Query 383 AAACTGTGCTTGCTAACAAGAAATGGGTTCCTCCTCCGGGTAAAGGAACTTTGTATATAA 442
||||||||||||| ||||| |||||||| ||||||||||| |||||| |||||||||| |
Sbjct 374 AAACTGTGCTTGCCAACAACAAATGGGTACCTCCTCCGGGGAAAGGAGCTTTGTATATTA 433
Query 443 GGCCTCTGCT-ACTAGGGAGTGGTGTTACCCTTGGAGTAGCTCCAGCACCTGAATACACA 501
||||||| || | |||| | ||||| | ||||||||||||| |||| |||||||| ||
Sbjct 434 GGCCTCTACTCA-TAGGTACTGGTGCTGTCCTTGGAGTAGCTTCAGCTCCTGAATATACG 492
Query 502 TTTCTCATATATGCATCTCCCGTAGGAGATTACCATAAGGTAAGCTCAGGCTTGAACCTC 561
|| ||||| || |||||||||| ||| |||| || |||| |||||||||||||||||||
Sbjct 493 TTCCTCATTTACACATCTCCCGTGGGAAATTATCACAAGGCAAGCTCAGGCTTGAACCTC 552
Query 562 AAAGTTGATCATAAGTCC--CACCGAGCCCA-TTCAGGTGGAAC-GGGTGGTGTCAAGAG 617
|||||||||||||| || | ||||||||| ||| |||||||| ||| ||||| |||||
Sbjct 553 AAAGTTGATCATAA--CCATCGCCGAGCCCACTTC-GGTGGAACAGGG-GGTGTGAAGAG 608
Query 618 CTGCACAAATTATTCTCCCGTTGTGAAATCGTTGCTTGAAGCAAAGTCAGCGGGTTTCTC 677
|||||||||||||||||| ||||| ||||||||| | ||||||||||| ||||||||||
Sbjct 609 CTGCACAAATTATTCTCCAGTTGTAAAATCGTTGATCGAAGCAAAGTCTTCGGGTTTCTC 668
Query 678 TGATGTCTTGTTTCTGGACGCGGCAACTGGTAGAAACATCGAAGAGCTTACTGCTTGTAA 737
|||||||||||| ||||| ||||||||||||| ||||||||||||| || || |||||||
Sbjct 669 TGATGTCTTGTTCCTGGATGCGGCAACTGGTAAAAACATCGAAGAGGTTTCTACTTGTAA 728
Query 738 CATCTTCATTCTCAAAGG-AAACATTGTGTCCACTCCACCAACTTCAGGAACCATTTTAC 796
|||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 729 CATCTTCATTCT-AAAGGGAAACATTGTATCCACTCCCCCAACTTCAGGAACCATTTTAC 787
Query 797 CTGGAGTCACGAGGAAAAGCATAAGCGAGCTAGCTCGTGATATTGGCTACCAGGTTGAAG 856
| ||| |||| ||||| |||||| | |||||||| ||||| |||||||| ||||| |||
Sbjct 788 CAGGAATCACAAGGAAGAGCATATGTGAGCTAGCCCGTGACATTGGCTATGAGGTTCAAG 847
Query 857 AACGTGATGTTTCTGTGGATGAGCTACTAGAGGCAGAAGAAGTTTTCTGCACAGGGACTG 916
|||||||| ||||||||||||||||| |||||||||| |||||||| ||||| ||||| |
Sbjct 848 AACGTGATCTTTCTGTGGATGAGCTATTAGAGGCAGAGGAAGTTTTTTGCACGGGGACGG 907
Query 917 CAGTGGTCGTTAAAGCTGTTGAAACTGTGACCTTCCATGACAAGAAGG-TAAAATACAGG 975
|||||||| |||||||||||||||| ||||| ||||||||||| |||| ||||||| ||
Sbjct 908 CAGTGGTCATTAAAGCTGTTGAAACCGTGACATTCCATGACAA-AAGGGTAAAATATAGA 966
Query 976 ACAGGAGAAGCGGCATTGTCTACGAAGCTTCACTCGATGTTAACCAATATTCAGATGGGG 1035
|||||||||| ||||| |||||||||||||||| ||| ||||| |||||||| |||||
Sbjct 967 ACAGGAGAAGAAGCATTCTCTACGAAGCTTCACTTGATATTAACTAATATTCAAATGGGA 1026
Query 1036 GTTGTTGAAGATAAGAAAGGTTGGATGGTGGATATCGATC 1075
||||| ||||||||||| ||||||||| |||| |||||||
Sbjct 1027 GTTGTCGAAGATAAGAAGGGTTGGATGATGGAGATCGATC 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57379222935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5