BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474150
Length=2580
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50180.1 | Symbols: | NB-ARC domain-containing disease resi... 3517 0.0
AT1G43180.1 | Symbols: | pseudogene, putative disease resistan... 673 0.0
AT1G50210.1 | Symbols: | pseudogene, similar to NBS-LRR protei... 329 7e-89
> AT1G50180.1 | Symbols: | NB-ARC domain-containing disease resistance
protein | chr1:18584235-18587136 FORWARD LENGTH=2574
Length=2574
Score = 3517 bits (1904), Expect = 0.0
Identities = 2070/2151 (96%), Gaps = 8/2151 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGAGGCTATTGTTTCTGTTACAGTGCAGAAGCTGGGAGAGTTGCTCTTGGAAGAA 60
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1 ATGGCAGAGGCTATTGTTTCTGTTACAGTGCAGAAGCTAGGACAGTTGCTCTTGGAAGAA 60
Query 61 CCGTTGTTCTTATTTGGTATAGGTGACCAAGTGAAGCAGCTGCAAGACGAATTGAAGCGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGTTGTTCTTATTTGGTATAGGTGACCAAGTGAAGCAGCTGCAAGACGAATTGAAGCGT 120
Query 121 TTGAAGTGCTTTTTGAAAGATGCAGATGAGAAGCAGTATAAAAGCGAGAGAGTGCGTAAC 180
||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 121 TTGAATTGCTTTTTGAAAGATGCAGATGAGAAGCAGCATGAAAGCGAGAGAGTGCGTAAC 180
Query 181 TGGGTTGCAGGCATTAGAGAAGCTTCTTATGATGCAGAGGATATCCTCGAGGCATGTTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 TGGGTTGCAGGCATTAGAGAAGCTTCTTATGATGCAGAGGATATCCTCGAGGCATTTTTC 240
Query 241 CTCAAAGCAGAATCAAGGAAACAAAAAGGGATGAAAAGGGTGCTTAGGAGGCTTGCTTAC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 CTCAAAGCAGAATCAAGGAAACAAAAAGGGATGAAAAGGGTGCTTAGGAGGCTTGCTTGC 300
Query 301 ATCTTGAACGAGGCGGTTTCACTTCATAGTGTTGGCTCAGAGATTAGAGAGATCACCTCC 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCTTGAACGAAGCGGTTTCACTTCATAGTGTTGGCTCAGAGATTAGAGAGATCACCTCC 360
Query 361 AAGCTTTCTAAGATAGCAGCAAGCATGCTAGATTACGGTATAATAGAAGCTATGGGCAGA 420
| |||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||
Sbjct 361 AGGCTTTCTAAGATAGCAGCAAGCATGCTAGATTTTGGTATAAAAGAATCTATGGGCAGA 420
Query 421 GAAGGCTTGAGTTTGTCTGATAGTCAAAGAGAACAGAGGCAGTCGTTTCCAT-TCGTTGT 479
||||| ||||||||||||||||||| ||||||||||||||| |||||||||| | |||||
Sbjct 421 GAAGGTTTGAGTTTGTCTGATAGTCTAAGAGAACAGAGGCAATCGTTTCCATAT-GTTGT 479
Query 480 TGAGCATAATCTTGTCGGGTTGGAGCAGAGTCTTGAGAAGTTGGTGAATGATTTAGTTTC 539
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TGAGCATAATCTTGTTGGGTTAGAGCAGAGTCTAGAGAAGTTGGTGAATGATTTAGTTTC 539
Query 540 TGGAGGTGAGAAACTAAGGGTCACAG-CCATCTGTGGGATGGGTGGTTTGGGGAAAACAA 598
||||||||||||||||| ||||| | ||||||| || ||||||||||||||||||||||
Sbjct 540 CGGAGGTGAGAAACTAAGAGTCAC-GTCCATCTGCGGAATGGGTGGTTTGGGGAAAACAA 598
Query 599 CTTTAGCCAAACAGATTTTCCATCACGGA-AAAGTGAGGCGTCATTTCGATAGGTTTGCT 657
|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 599 CTTTAGCCAAACAGATTTTCCATCAC-CATAAAGTGAGGCGTCATTTCGATAGATTTGCT 657
Query 658 TGGGTATATGTTTCTCAAGACTGTAGACGGACACATATTTGGCAAGAGATTTTTCTAAAT 717
||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| |||
Sbjct 658 TGGGTATATGTTTCTCAAGACTGTAGACGGAGACATGTTTGGCAAGACATTTTTCTGAAT 717
Query 718 CTCAGCTACAAGGATGAGAATCAGAGAATACTCAGCTTGAGGGATGAACAGCTTGGAGAG 777
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 CTCAGCTACAAGGATGAAAATCAGAGAATACTCAGCTTGAGGGATGAACAACTTGGAGAG 777
Query 778 GAGTTGCATAAGTTCTTGAAAAGGAATAAATGCCTCATTGTGCTTGATGATATCTGGGGC 837
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GAGTTGCATCGGTTCTTGAAAAGGAATAAATGCCTCATTGTGCTTGATGATATCTGGGGC 837
Query 838 AAAGATGCTTGGGATTGTCTGAAACACGTTTTTCCACATGAAACAGGAAGCGAAATAATC 897
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 AAAGATGCTTGGGATTGTCTGAAACACGTCTTTCCACATGAAACAGGAAGCGAAATAATC 897
Query 898 CTCACCACTCGGAACAAGGAAGTCGCTTTATATGCTGATCCCAGGGGTGTGCTTCATGAG 957
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTCACTACTCGGAACAAGGAAGTCGCTTTATATGCTGATCCCAGGGGTGTGCTTCATGAG 957
Query 958 CCACAATTGCTAACATGTGAAGAGAGTTGGGAGCTGTTGGAGAAAATTTCATTATCTGGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCACAATTGCTAACATGTGAAGAGAGTTGGGAGCTGTTGGAGAAAATTTCATTATCTGGA 1017
Query 1018 AGAGAAGATATAGAGCCAATGTTGGTCAAGAAACTGGAGGAGATTGGGAAGCAGATAGTC 1077
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1018 AGAGAAAATATAGAGCCAATGTTGGTCAAGAAAATGGAGGAGATTGGGAAGCAGATAGTT 1077
Query 1078 GTAAGGTGTGGAGGTTTACCTCTAGCTATAACAGTTCTTGGAGGACTTCTGGCAATGAAA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1078 GTAAGGTGTGGAGGTTTACCTCTAGCTATAACAGTTCTTGGAGGACTTCTGGCAACGAAA 1137
Query 1138 AGTACATGGAACGAGTGGCAAAGAGTATACGAGAACATCAAATCATATGTTTCAAACGGA 1197
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1138 AGTACATGGAACGAGTGGCAAAGAGTATGCGAGAACATCAAATCATATGTTTCAAATGGA 1197
Query 1198 GGTAGTAGCAATGGAAGTAAGAACATGCTAGTTGCAGATGTTTTATGCTTGAGTTACGAG 1257
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1198 GGTAGTAGCAATGGAAGTAAGAACATGCTAGTTGCAGATGTTTTGTGCTTGAGTTACGAG 1257
Query 1258 TACTTGCCTCCCCATCTAAAGCAATGTTTCCTCTACTTTGCTCATTATCCTGAAGACTAT 1317
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TACTTGCCTCCCCATGTAAAGCAATGTTTCCTCTACTTTGCTCATTATCCTGAAGACTAT 1317
Query 1318 GAGGTTCATGTGGGAACATTAGTTAGTTACTGGATCGCAGAGGGAATGGTTATGCCTGTA 1377
|||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 1318 GAGGTTCATGTGGGAACACTAGTTAGTTATTGCATCGCAGAGGGAATGGTTATGCCTGTA 1377
Query 1378 AAACACACAGAGGCTGGCACGACAGTAGAAGATATTGGGCAAGATTATCTCGAAGAATTA 1437
|||||||||||||||||||||||||| |||||| | |||||||||||||| || ||||||
Sbjct 1378 AAACACACAGAGGCTGGCACGACAGTGGAAGATGTCGGGCAAGATTATCTTGAGGAATTA 1437
Query 1438 GTAAAGAGAAGCATGGTTATGGTTGGGAGGAGGGACATTGTAACTTCGGAAGTCATGACA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GTAAAGAGAAGCATGGTTATGGTTGGGAGGAGGGACATTGTAACTTCGGAAGTCATGACA 1497
Query 1498 TGCCGTATGCATGACCTCATGAGGGAGGTGTGTTTACAGAAGGCAGAGCAAGAAAGCTTT 1557
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1498 TGCCGTATGCATGACCTCATGAGGGAGGTGTGTTTACAGAAGGCAAAGCAAGAAAGCTTT 1557
Query 1558 GTCCAAGTTATTGATTCAAGGGATCAAGATGAAGCTGAGGCTTTTTTATCTCTTTCGACC 1617
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1558 GTGCAAGTTATTGATTCAAGGGATCAAGATGAAGCTGAGGCTTTTATATCTCTTTCGACC 1617
Query 1618 AATACATCTCGTAGAATTTCTGTTCAATTACATGGTGGAGCAGAGGAGCACCAGATCAAG 1677
||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 1618 AATACATCTCGTAGAATTTCTGTCCAACTACATGGTGGAGCAGAGGAGCACCATATCAAG 1677
Query 1678 AGACTTTCTCAGGTTTCCTTCAGAAAGATGAAACTTCTTCGAGTTCTAGATCTCGAGGGA 1737
|| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1678 AGTCTGTCGCAGGTTTCCTTCAGAAAGATGAAACTTCTTCGAGTTCTAGATCTTGAGGGA 1737
Query 1738 GCTCAAATCGAGGGAGGGAAGTTGCCAGACGATGTAGGAGATCTCATCCATTTGAG-ATA 1796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1738 GCTCAAATCGAGGGAGGGAAGTTGCCAGACGATGTAGGAGATCTCATCCATTTGAGGA-A 1796
Query 1797 CCTGAGCGTGAGATTGACAAACGTGAAGGAACTTACAACATCTATTGGAAACTTAAAGTT 1856
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1797 CCTGAGCGTGAGATTGACAAACGTGAAGGAACTTACATCATCTATTGGAAACTTAAAGTT 1856
Query 1857 GATGATTACTCTAGACTTGTTTGTGAAGGGGCAACTGTATATTCCAAACCAACTCTGGGA 1916
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1857 GATGATTACTCTAGACTTGTTCGTGAAAGGGCAACTGTATATTCCAAACCAACTCTGGGA 1916
Query 1917 TTTTCCTGTTGGAAAATGCAATCCAAGGGATCTTTTAGCAATGACCAGTCTTAGAAGATT 1976
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1917 TTTTCCTGTTGGAAAGTGCAATCCAAGGGATCTTTTAGCAATGACAAGTCTTAGAAGATT 1976
Query 1977 GTCTATCAATCTTTCTTCGCAGAACACAGACTTCGAGGTGGTATCTTCTCTAAGTAAAGT 2036
||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||
Sbjct 1977 GTCTATCAATCTTTCTTCGCAGAACACAGACTTCGTGGTGGTGTCTTCACTAAGTAAAGT 2036
Query 2037 CTTGAAACGTCTCCGTGGCTTGACAATAAACGTTCCATGCGAACCTATGCTTCCACCAGT 2096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 CTTGAAACGTCTCCGTGGCTTGACAATAAACGTTCCATGCGAACCTATGCTTCCACCAGT 2096
Query 2097 TGATGTAACACAGTTGGTTTCTGCATTTACTGATCTCTCTGAACTGGAACT 2147
||||||||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct 2097 AGATGTAACACAGTTGGTCTCTGCATTTACTAATCTCTGTGAACTGGAACT 2147
Score = 350 bits (189), Expect = 5e-95
Identities = 223/240 (93%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 2341 GAGAATCTAGAGGAGTGGACTGTAGAAGACGGTGCCATGATGCGTCTTGTCTCCATGGAG 2400
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2335 GAGAATCTAGAGGAGTGGACTGTAGAAGACGGTGCCATGATGCGTCTTGTCACCGTGGAG 2394
Query 2401 TTGAAGTGCTGTAAGAAACTGAAGTCAGTTCCTGAAGGAACGAGATTCCTGAAGAATCTA 2460
| ||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2395 CTAAAGTGTTGTAACAAACTGAAGTCAGTTCCTGAAGGAACGAGATTCCTAAAAAATCTA 2454
Query 2461 CAAGAAGTGGAGATTAGGAACATGAAAAAGGCATTAAAGGATAAGCTGATCTCTGGTGGT 2520
|||||||| |||||| |||||| || ||||||||| ||||| ||||| ||||||||||||
Sbjct 2455 CAAGAAGTAGAGATTGGGAACAGGACAAAGGCATTTAAGGACAAGCTAATCTCTGGTGGT 2514
Query 2521 GAAGATTTCTACAAGGTTCAACATGTGCCTTGTGTTGTTTTCGAGAACTGTGACCTTTAA 2580
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 2515 GAAGATTTCTACAAGGTTCAACATGTGCCTTGTGTTGTTTTTGAGAACTGTGAACTTTAA 2574
Score = 268 bits (145), Expect = 1e-70
Identities = 152/155 (98%), Gaps = 1/155 (1%)
Strand=Plus/Plus
Query 2148 AACAGAG-TTCTCCTCTGATCTTGGTGCTCTACGTTTGTGGCAATGCGGATTAGTGGATG 2206
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2177 AACAGAGTTTCTCCTCTGATCTTGGTGCTCTACGTTTGTGGCAATGCGGATTAGTGGATG 2236
Query 2207 ACCCGTTTCTGGTTCTCGAGAAGCTTCCAAACTTGAAGATTCTCCAACTGTTTGAAGGAT 2266
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 ACCCGTTTATGGTTCTCGAGAAGCTTCCAAACTTGAAGATTCTCCAACTGTTTGAAGGAT 2296
Query 2267 CATTTGTAGGTAGTAAGCTTTGTTGTTCCAAAAAT 2301
||||||||||||||||||||||||||||||| |||
Sbjct 2297 CATTTGTAGGTAGTAAGCTTTGTTGTTCCAAGAAT 2331
> AT1G43180.1 | Symbols: | pseudogene, putative disease resistance
protein, similar to disease resistance protein GI:8843900
from (Arabidopsis thaliana); blastp match of 30% identity
and 8.6e-32 P-value to GP|4092774|gb|AAC99466.1||AF105140 disease
resistance gene homolog 9N {Brassica napus} | chr1:16271201-16272798
REVERSE LENGTH=1598
Length=1598
Score = 673 bits (364), Expect = 0.0
Identities = 413/436 (95%), Gaps = 5/436 (1%)
Strand=Plus/Plus
Query 2148 AACAGAG-TTCTCCTCTGATCTTGGTGCTCTACGTTTGTGGCAATGCGGATTAGTGGATG 2206
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AACAGAGTTTCTCCTCTGATCTTGGTGCTCTACGTTTGTGGCAATGCGGATTAGTGGATG 1194
Query 2207 ACCCGTTTCTGGTTCTCGAGAAGCTTCCAAACTTGAAGATTCTCCAACTGTTTGAAGGAT 2266
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ACCCTTTTGTGGTTCTCGAGAAGCTTCCAAACTTGAAGATTCTCCAACTGTTTGAAGGAT 1254
Query 2267 CATTTGTAGGTAGTAAGCTTTGTTGTTCCAAAAATGGTTTTCCTCAACTGCATTCTTTGA 2326
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1255 CATTTGTAGGTAGTAAGCTTTGTTGTTCCAAAAGTGGTTTTACTCAACTGCATTCTTTGA 1314
Query 2327 CATTGTCAGAGCTTGAGAATCTAGAGGAGTGGACTGTAGAAGACGGTGCCATGATGCGTC 2386
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CATTGTCACAGCTTGAGAATCTAGAGGAGTGGACTGTAGAAGACGGTGCCATGATGCGTC 1374
Query 2387 TTGTCTCCATGGAGTTGAAGTGCTGTAAGAAACTGAAGTCAGTTCCTGAAGGAACGAGAT 2446
||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 1375 TTGTCTCGATGGAGTTAAAGTGTTGTAACAAACTGAAGTCAGTTCCCGAAGGAACGAGAT 1434
Query 2447 TCCTGAAGAATCTACAAGAAGTGGAGATT-AGGAACATGAAAAAGGCAT-TAAAGGATAA 2504
||||||| |||||||||||| | |||||| |||| ||||| |||||||| ||| ||| ||
Sbjct 1435 TCCTGAAAAATCTACAAGAATTAGAGATTGAGGA-CATGACAAAGGCATCTAA-GGACAA 1492
Query 2505 GCTGATCTCTGGTGGTGAAGATTTCTACAAGGTTCAACATGTGCCTTGTGTTGTTTTCGA 2564
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1493 GCTGATCTCTGGTGGTGAAGATTACTACAAGGTTCAACATGTGCCTTGTGTTGTTTTTGA 1552
Query 2565 GAACTGTGACCTTTAA 2580
||||||||| ||||||
Sbjct 1553 GAACTGTGAACTTTAA 1568
Score = 625 bits (338), Expect = 8e-178
Identities = 419/454 (92%), Gaps = 21/454 (5%)
Strand=Plus/Plus
Query 1078 GTAAGGTGTGGAGGTTTACCTCTAGCTATAACAGTTCTTGGAGGACTTCTGGCAATGAAA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 18 GTAAGGTGTGGAGGTTTACCTCTAGCTATAACAGTTCTTGGAGGACTTCTGGCAACCAAA 77
Query 1138 AGTACATGGAACGAGTGGCAAAGAGTATACGAGAACATCAAATCATATGTTTCAAACGGA 1197
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 78 AGTACATGGAACGAGTGGCAAAGAGTATACGAGAACATCACATCATATGTTTCAAATGGA 137
Query 1198 GGTAGTAGCAATGGAAGTAAGAACATGCTAGTTGCAGATGTTTTATGCTTGAGTTACGAG 1257
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 138 GTTAGTAGCAATGGAAGTAAGAACATGCTAGTTGCAGATGTTTTGTGCTTGAGTTACGAG 197
Query 1258 TACTTGCCTCCCCATCTAAAGCAATGTTTCCTCTACTTTGCTCATTATCCTGAAGACTAT 1317
||||||||||||||| |||||| | | || | ||||||||||||
Sbjct 198 TACTTGCCTCCCCATTTAAAGC-A----------A---TG-----T-TCCTGAAGACTAC 237
Query 1318 GAGGTTCATGTGGGAACATTAGTTAGTTACTGGATCGCAGAGGGAATGGTTATGCCTGTA 1377
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAGGTTCATGTGGGAACACTAGTTAGTTACTGGATCGCAGAGGGAATGGTTATGCCTGTA 297
Query 1378 AAACACACAGAGGCTGGCACGACAGTAGAAGATATTGGGCAAGATTATCTCGAAGAATTA 1437
||||||||||||||| ||||||||||||||||| | |||||||||||||| || ||||||
Sbjct 298 AAACACACAGAGGCTAGCACGACAGTAGAAGATGTCGGGCAAGATTATCTTGAGGAATTA 357
Query 1438 GTAAAGAGAAGCATGGTTATGGTTGGGAGGAGGGACATTGTAACTTCGGAAGTCATGACA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTAAAGAGAAGCATGGTTATGGTTGGGAGGAGGGACATTGTAACTTCGGAAGTCATGACA 417
Query 1498 TGCCGTATGCATGACCTCATGAGGGAGGTGTGTT 1531
||||||||||||||| ||||||||||||||||||
Sbjct 418 TGCCGTATGCATGAC-TCATGAGGGAGGTGTGTT 450
Score = 398 bits (215), Expect = 2e-109
Identities = 233/242 (96%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 1906 CAACTCTGGGATTTTCCTGTTGGAAAATGCAATCCAAGGGATCTTTTAGCAATGACCAGT 1965
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 864 CAACTCTGGGATTTTCCTGTTGGAAAGTGCAATCCAAGGGATCTTTTAGCAATGACAAGT 923
Query 1966 CTTAGAAGATTGTCTATCAATCTTTCTTCGCAGAACACAGACTTCGAGGTGGTATCTTCT 2025
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 924 CTTAGAGGATTGTCTATCAATCTTTCTTCGCAGAACACAGACTTCGAGGTGGTGTCTTCT 983
Query 2026 CTAAGTAAAGTCTTGAAACGTCTCCGTGGCTTGACAATAAACGTTCCATGCGAACCTATG 2085
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 CTAAGCAAAGTCTTGAAACGTCTCCGTGGCTTGACAATAAACGTTCCATGCGAACCTATG 1043
Query 2086 CTTCCACCAGTTGATGTAACACAGTTGGTTTCTGCATTTACTGATCTCTCTGAACTGGAA 2145
||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||
Sbjct 1044 CTTCCACCAGTAGATGTAACACAGTTGGTCTCTGCATTTACTAATCTCTGTGAACTGGAA 1103
Query 2146 CT 2147
||
Sbjct 1104 CT 1105
Score = 350 bits (189), Expect = 5e-95
Identities = 213/223 (96%), Gaps = 7/223 (3%)
Strand=Plus/Plus
Query 1688 AGGTTTCCTTCAGAAAGATGAAACTTCTTCGAGTTCTAGATCTCGAGGGAGCT-CAAATC 1746
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 547 AGGTTTCCTTCAGAAAGATGAAACTTCTTCGAGTTCTAGATCTCGAGGGAG-TGCAAATC 605
Query 1747 GAGGGAGGGAAGTTGCCAGACGATGTAGGAGATCTCATCCATTTGAG-ATACCTGAGCGT 1805
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 606 GAGGGAGGGAAGTTGCCAGACGATGTAGGAGATCTCATCCATTTGAGGA-ACCTGAGCGT 664
Query 1806 GAGATTGACAAACGTGAAGGAACTTACAACATCTATTGGAAACTTAAAGTTGATGAT--T 1863
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 665 GAGATTGACAAACGTGAAGGAACTTACATCATCTATTGGAAACTTAAAGTTGATGATGAT 724
Query 1864 -ACTCTAGACTTGTTTGTGAAGGGGCAACTGTATATTCCAAAC 1905
||| |||||||||| |||||||||||||||||||||||||||
Sbjct 725 TACTTTAGACTTGTTCGTGAAGGGGCAACTGTATATTCCAAAC 767
> AT1G50210.1 | Symbols: | pseudogene, similar to NBS-LRR protein,
blastp match of 61% identity and 8.2e-06 P-value to GP|5918254|emb|CAB56299.1||AJ249448
NBS-LRR protein {Solanum acaule}
| chr1:18600978-18601717 FORWARD LENGTH=740
Length=740
Score = 329 bits (178), Expect = 7e-89
Identities = 200/211 (95%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 1029 AGAGCCAATGTTGGTCAAGAAACTGGAGGAGATTGGGAAGCAGATAGTCGTAAGGTGTGG 1088
||||||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 461 AGAGCCAATGTTGGTTAAGAAAATGGAGGAGATTGGGAAGCAGATAATTGTAAGGTGTGG 520
Query 1089 AGGTTTACCTCTAGCTATAACAGTTCTTGGAGGACTTCTGGCAATGAAAAGTACATGGAA 1148
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 521 AGGTTTACCTCTAGCTATAACAGTTCTTGGAGGATTTCTGGCAATGATAAGTACATGGAA 580
Query 1149 CGAGTGGCAAAGAGTATACGAGAACATCAAATCATATGTTTCAAACGGAGGTAGTAGCAA 1208
|||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||
Sbjct 581 CGAGTGGCAAAGAGTATATGAGAACATCAAATCATATGTTTCAAATGGAGTTAGTAGCAA 640
Query 1209 TGGAAGTAAGAACATGCTAGTTGCAGATGTT 1239
||||||||||||||||||| ||||| |||||
Sbjct 641 TGGAAGTAAGAACATGCTAATTGCATATGTT 671
Score = 182 bits (98), Expect = 2e-44
Identities = 110/115 (96%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 919 GTCGCTTTATATGCTGATCCCAGGGGTGTGCTTCATGAGCCACAATTG---CTAACATGT 975
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 274 GTCGCTTTATATGCTGATCCCAGGGGTGTGCTTCATGAGCAACAATTGAAGCTAACATGT 333
Query 976 GAAGAGAGTTGGGAGCTGTTGGAGAAAATTTCATTATCTGGAAGAGAAGATATAG 1030
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 334 GAAGAGAGTTGGGAGCTGTTGGAGAAAATTTCATTATCTGGAAGAGAAAATATAG 388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128076205479
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5