BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474162

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50350.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   577    3e-164


> AT1G50350.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: RING/U-box superfamily protein (TAIR:AT3G19950.1); 
Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18648756-18649227 
FORWARD LENGTH=402
Length=402

 Score =  577 bits (312),  Expect = 3e-164
 Identities = 375/405 (93%), Gaps = 6/405 (1%)
 Strand=Plus/Plus

Query  1    ATGACTTCCGGCGGAAACTCAATCGAATCCTCCGTCGTGGCGGCGGCGGCGGATAAGATG  60
            ||||| ||||||||||||||||||||| ||||||||||   ||| | |||||| ||||||
Sbjct  1    ATGACCTCCGGCGGAAACTCAATCGAACCCTCCGTCGT---GGCAGAGGCGGAGAAGATG  57

Query  61   TTCTTCTGCTACCAATGCGATCAGACGATCACAATCTCTATTACTTCCTCCGCTGATCCT  120
            || || || ||||||| ||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  58   TTATTTTGTTACCAATACGATCAGACCATCACAATCTCTATTACTTCCTCCGCTGATCC-  116

Query  121  TTTTGCCCTCTTTGCAACGGAGGTTTTCTCGAAGAATACGTAGATCCTAACCCTAATCCA  180
              ||| ||||||||||||||||||||||| || |||||||| || |||||||||||||||
Sbjct  117  --TTGTCCTCTTTGCAACGGAGGTTTTCTGGACGAATACGTTGACCCTAACCCTAATCCA  174

Query  181  ATCCCCAATCTGATTCTCCCGATGTCGGATCCAATCTCATCTCGCTTCCCCTTCATCCCA  240
            ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct  175  ATCCCCAATCTAATTCTCCCGATGTCGGATCCAATCTCATCTCGCTTCTCATTCATCCCA  234

Query  241  GTCATGGACTTCACGAATCCGAGTTTCTTAGGTGAATCAATGGAGCCACAGTCTACTCAG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  235  GTCATGGACTTCACGAATCCGAGTTTCTTAGGTGAATCAATGGAGCCACAGTCTACTCAG  294

Query  301  CAACAGCCTGATGCTTTTGATCAGAATCAACTCTCGGATCAAGCTAATCCGTTACCGGGA  360
            ||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||| 
Sbjct  295  CAACAGCTTAATGCTTTTGATCCGAATCAACTCTCGGATCAAGCTAATCCGTTAGCGGGG  354

Query  361  AATCACGGGGATTACTTCTTTGGTCGTGGTCTTGAGGATCTGATT  405
            |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  355  AATCACGGAGATTACTTCTTTGGTCGTGGTCTTGAGGATCTGATT  399



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5