BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474162 Length=405 Score E Sequences producing significant alignments: (Bits) Value AT1G50350.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 577 3e-164 > AT1G50350.1 | Symbols: | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19950.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18648756-18649227 FORWARD LENGTH=402 Length=402 Score = 577 bits (312), Expect = 3e-164 Identities = 375/405 (93%), Gaps = 6/405 (1%) Strand=Plus/Plus Query 1 ATGACTTCCGGCGGAAACTCAATCGAATCCTCCGTCGTGGCGGCGGCGGCGGATAAGATG 60 ||||| ||||||||||||||||||||| |||||||||| ||| | |||||| |||||| Sbjct 1 ATGACCTCCGGCGGAAACTCAATCGAACCCTCCGTCGT---GGCAGAGGCGGAGAAGATG 57 Query 61 TTCTTCTGCTACCAATGCGATCAGACGATCACAATCTCTATTACTTCCTCCGCTGATCCT 120 || || || ||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 58 TTATTTTGTTACCAATACGATCAGACCATCACAATCTCTATTACTTCCTCCGCTGATCC- 116 Query 121 TTTTGCCCTCTTTGCAACGGAGGTTTTCTCGAAGAATACGTAGATCCTAACCCTAATCCA 180 ||| ||||||||||||||||||||||| || |||||||| || ||||||||||||||| Sbjct 117 --TTGTCCTCTTTGCAACGGAGGTTTTCTGGACGAATACGTTGACCCTAACCCTAATCCA 174 Query 181 ATCCCCAATCTGATTCTCCCGATGTCGGATCCAATCTCATCTCGCTTCCCCTTCATCCCA 240 ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 175 ATCCCCAATCTAATTCTCCCGATGTCGGATCCAATCTCATCTCGCTTCTCATTCATCCCA 234 Query 241 GTCATGGACTTCACGAATCCGAGTTTCTTAGGTGAATCAATGGAGCCACAGTCTACTCAG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 235 GTCATGGACTTCACGAATCCGAGTTTCTTAGGTGAATCAATGGAGCCACAGTCTACTCAG 294 Query 301 CAACAGCCTGATGCTTTTGATCAGAATCAACTCTCGGATCAAGCTAATCCGTTACCGGGA 360 ||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 295 CAACAGCTTAATGCTTTTGATCCGAATCAACTCTCGGATCAAGCTAATCCGTTAGCGGGG 354 Query 361 AATCACGGGGATTACTTCTTTGGTCGTGGTCTTGAGGATCTGATT 405 |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 355 AATCACGGAGATTACTTCTTTGGTCGTGGTCTTGAGGATCTGATT 399 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19152012369 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5