BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474168
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50420.1 | Symbols: SCL3, SCL-3 | scarecrow-like 3 | chr1:18... 2894 0.0
> AT1G50420.1 | Symbols: SCL3, SCL-3 | scarecrow-like 3 | chr1:18677926-18680117
REVERSE LENGTH=1951
Length=1951
Score = 2894 bits (1567), Expect = 0.0
Identities = 1831/1950 (94%), Gaps = 52/1950 (3%)
Strand=Plus/Plus
Query 1 ACACACACGCTATTACTCACAAGATAACCACCAGAGACTTAGATAGATAGATAAAGATAG 60
|||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| |
Sbjct 1 ACACACACGCTATTACTCACAAGATAACCACCAGAGACGTGGATAGAGAGATAAAGATTG 60
Query 61 AGAG-a-------a-----aaaaaaaaaGCTTTAAGACATTTTCTTTAAATTCAGATTCT 107
|||| | | |||||||||||||| ||||||||||| ||||| || |||||
Sbjct 61 AGAGAACCCTCTCACTCCCAAAAAAAAAGCTTT-AGACATTTTCTCTAAATCCATATTCT 119
Query 108 CTGGATCTTTAAAGAAATTCCGAATCGTGGGTTTGGTTCTTCTGGTTAC--G-------- 157
||| |||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 120 CTGCATCTTTCAAGAAATTCCGAATCGTGGGTTTGGTTCTTCTCGTTACGAGTCTCTCAA 179
Query 158 AG------TC--TC--T-C---AAA-GTT-CTTTTGGTTCTGAGTAAATCCAAAATCAAG 201
|| || || | | ||| ||| ||||||||||||||||||| ||||||||||
Sbjct 180 AGTTTAAATCTTTCTTTACAAAAAAGGTTACTTTTGGTTCTGAGTAAAT-CAAAATCAAG 238
Query 202 C-TTTGGCCTTCAATGGTGGCTATGTTTCAAGAAGATAATGGAACATCTTCTGTAGCTTC 260
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTTTTGGCCTTCAATGGTGGCTATGTTTCAAGAAGATAATGGAACATCTTCTGTAGCTTC 298
Query 261 ATCACCACTTCAAGTCTTCTCAACTATGTCACTCAACAGACCGACTCTCCTTGCTTCTTC 320
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 ATCACCACTTCAAGTCTTCTCAACTATGTCACTCAACAGACCGACTCTCCTCGCTTCTTC 358
Query 321 ATCACCGTTTCATTGTCTCAAAGATCTCAAACCTGAGGAGCGTGGTCTCTACTTAATCCA 380
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 359 ATCTCCGTTTCATTGTCTCAAAGATCTCAAACCAGAGGAGCGTGGTCTCTACTTAATCCA 418
Query 381 CCTCTTGCTAACTTGCGCCAACCACGTTGCGTCAGGTAGCCTCCAAAACGCTAACGCAGC 440
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 419 CCTCTTGCTAACTTGTGCCAACCACGTGGCTTCAGGTAGCCTCCAAAACGCTAACGCAGC 478
Query 441 GCTCGAGCAGCTCTCTCACCTCGCTGCTCCTGACGGCGACACGATGCAGCGTATCGCTGC 500
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 479 GCTCGAGCAGCTCTCTCACCTCGCTTCTCCTGACGGCGACACGATGCAGCGAATCGCTGC 538
Query 501 TTACTTCACCGAAGGGCTCGCTAACAGAATCCTTAAGTCCTGGCCTGGTCTCTACAAGGC 560
|||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 539 TTACTTCACCGAAGCGCTTGCTAACAGAATCCTTAAGTCCTGGCCTGGTCTTTACAAGGC 598
Query 561 TCTTAACGCAACTCAGATAAGAACCAACAATGTCTCTGAGGAGATTCATGTTAGAAGACT 620
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 599 TCTTAACGCAACTCAGACAAGAACTAACAATGTCTCTGAGGAGATTCATGTTAGAAGACT 658
Query 621 CTTCTTTGAGATGTTCCCGATACTCAAAGTCTCTTACTTGCTCACTAATCGAGCTATACT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTTCTTTGAGATGTTCCCGATACTCAAAGTCTCTTACTTGCTCACTAATCGAGCTATACT 718
Query 681 TGAGGCTATGGAAGGAGAGAAGATGGTTCATGTGATTGATCTCGATGCTTCTGAGCCAGC 740
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CGAGGCTATGGAAGGAGAGAAGATGGTTCATGTGATTGATCTCGATGCTTCTGAGCCAGC 778
Query 741 TCAATGGCTTGCTTTGATTCAAGCTTTTAACTCTAGGCCTGAAGGTCCACCTCATTTGAG 800
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCAATGGCTTGCTTTGCTTCAAGCTTTTAACTCTAGGCCTGAAGGTCCACCTCATTTGAG 838
Query 801 AATCACTGGTGTTCATCATCAGAAGGAAGTGCTTGAACAAATGGCTCATAGACTCATTGA 860
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AATCACTGGTGTTCATCACCAGAAGGAAGTGCTTGAACAAATGGCTCATAGACTCATTGA 898
Query 861 GGAAGCAGAGAAGCTCGATATCCCGTTTCAGTTTAATCCTGTTGTGTGTAGATTAGACTG 920
|||||||||||| |||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 899 GGAAGCAGAGAAACTCGATATCCCGTTTCAGTTTAATCCCGTTGTGAGTAGGTTAGACTG 958
Query 921 TTTAAATGTAGAACAGTTGCGGGTTAAAACAGGAGAGGCCTTAGCCGTTAGCTCGGTTCT 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTTAAATGTAGAACAGTTGCGGGTTAAAACAGGAGAGGCCTTAGCCGTTAGCTCGGTTCT 1018
Query 981 TCAATTGCATACCTTCTTGGCCTCTGATGATGATCTCATGAGAAAGAACTGCGCTTTACG 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCAATTGCATACCTTCTTGGCCTCTGATGATGATCTCATGAGAAAGAACTGCGCTTTACG 1078
Query 1041 GTTTCAGAACAACCCTAGTGGAGTTGACTTACAGAGAGTTCTAATGATGAGCCATGGCTC 1100
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 GTTTCAGAACAACCCTAGTGGAGTTGACTTGCAGAGAGTTCTAATGATGAGCCATGGCTC 1138
Query 1101 TGCAGCCGAGGCACATGAGAATGATATGAG---CAACAATGGGTATAGCCCGAGTGGCGA 1157
|||||| ||||||| ||||||||||||||| |||||||||||||||||| || || ||
Sbjct 1139 TGCAGCTGAGGCACGTGAGAATGATATGAGTAACAACAATGGGTATAGCCCTAGCGGTGA 1198
Query 1158 CTCGGCCTCATCTTTGCCTCTACCTAGTTCAGGAAGGACTGATGGCTTCCTCAATGCAAT 1217
||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||
Sbjct 1199 CTCGGCCTCATCTTTGCCTTTACCAAGTTCAGGAAGGACTGATAGCTTCCTCAATGCTAT 1258
Query 1218 TTGGGGTTTATCTCCAAAGGTCATGGTGGTCACTGAGCAAGACTCAGACCACAACGGCTC 1277
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTGGGGTTTGTCTCCAAAGGTCATGGTGGTCACTGAGCAAGACTCAGACCACAACGGCTC 1318
Query 1278 CACACTAATGGAGAGGCTATTAGAATCACTCTACACCTACGCAGCATTGTTTGATTGTTT 1337
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1319 CACACTAATGGAGAGGCTATTAGAATCACTTTACACCTACGCAGCATTGTTTGATTGCTT 1378
Query 1338 GGAAACAAAAGTTCCAAGAACGTCTCAAGATAGGATCAAAGTGGAGAAGATGCTCTTCGG 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGAAACAAAAGTTCCAAGAACGTCTCAAGATAGGATCAAAGTGGAGAAGATGCTCTTCGG 1438
Query 1398 GGAGGAGATCAAGAATATCATAGCGTGCGAGGGATTTGAGAGAAGAGAAAGACACGAGAA 1457
||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1439 GGAGGAGATCAAGAACATCATATCCTGCGAGGGATTTGAGAGAAGAGAAAGACACGAGAA 1498
Query 1458 GCTTGAGAAATGGAGCCAGAGGATCGATTTGGCTGGTTTTGGGAATGTTCCTCTTAGCTA 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GCTTGAGAAATGGAGCCAGAGGATCGATTTGGCTGGTTTTGGGAATGTTCCTCTTAGCTA 1558
Query 1518 CTATGCGATGTTGCAGGCGAGGAGATTGCTTCAAGGATGCGGTTTTGATGGGTATAGAAT 1577
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1559 TTATGCGATGTTGCAGGCTAGGAGATTGCTTCAAGGGTGCGGTTTTGATGGGTATAGAAT 1618
Query 1578 CAAAGAAGAGAGCGGGTGCGCAGTGATTTGCTGGCAAGATCGACCTCTATACTCGATATC 1637
||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1619 CAAGGAAGAGAGCGGGTGCGCAGTAATTTGCTGGCAAGATCGACCTCTATACTCGGTATC 1678
Query 1638 AGCTTGGAGATGCAGGAAGTGAATGATATGT-ACACTTTGTGTTCTCTTTTGTTTATGAG 1696
||||||||||||||||||||||||||||| | ||| ||||| |||| ||||| |||||||
Sbjct 1679 AGCTTGGAGATGCAGGAAGTGAATGATATATTACAGTTTGTCTTCTATTTTGGTTATGAG 1738
Query 1697 CAGAGTCCCTTTCTTTT--GTAAACATAGGGACACAATCTTAGTTGTTTTGTGATTGTGA 1754
||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||
Sbjct 1739 CAGAGTCCCTTTCTTTTTTGTATACATGGGGACACAATCTTAGTTGTTTTGTGATGGTGA 1798
Query 1755 CTTTCTGTCTCTTTATGCTATTTTGGC--AAATGCTTCTACTGCATCTGCATATAA-GCC 1811
||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| |||
Sbjct 1799 CTTTCTGTCTCTTTATGCTATTTTGGCTTAAATGCTTCTACTGCCTCTGCATGTAAAGCC 1858
Query 1812 TTTGTGTGTTGGTTCATTTTGGTCTGGTCTGG-TGTAATACCAAACCAAATCCAAATTGA 1870
|||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct 1859 TTTGTGTGTTGGTTCAATTTGGTCTGGTGTGGGTGTAATACCAAACCAAATCCAATTTGA 1918
Query 1871 GCTGAAGATAACTAATTTTATGGTCGGTTC 1900
|||||||||||||||||| ||| |||||||
Sbjct 1919 GCTGAAGATAACTAATTTGATGATCGGTTC 1948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94075821330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5