BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474170
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50430.1 | Symbols: DWF5, PA, LE, ST7R, 7RED | Ergosterol bi... 2514 0.0
> AT1G50430.1 | Symbols: DWF5, PA, LE, ST7R, 7RED | Ergosterol
biosynthesis ERG4/ERG24 family | chr1:18681932-18685652 REVERSE
LENGTH=1639
Length=1639
Score = 2514 bits (1361), Expect = 0.0
Identities = 1542/1624 (95%), Gaps = 34/1624 (2%)
Strand=Plus/Plus
Query 2 TTCATCGTTAACTTCGCAGACTCTGTTGGGATTAGTCAACACAGATCAGAATCTGA-GCT 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 9 TTCATCGTTAACTTCGCAGACTCTGTT--GATTAGTCAACACAGATCAGAATCTGAGGC- 65
Query 61 TTTGGCCGAGACAAGCgaagaagaagaagaagaagaTGGCGGAGACTGTACATTCTCCGA 120
|||||||||||| | | ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 66 TTTGGCCGAGAC--GAG-AGAAGCAGAAGAAGAAAATGGCGGAGACTGTACATTCTCCGA 122
Query 121 TCGTTACTTACGCATCGATGTTATCGCTTCTCGCTTTCTGTCCACCTTTCGTCATTCTCC 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 123 TCGTTACTTACGCATCGATGTTATCGCTTCTCGCCTTCTGTCCACCTTTCGTCATTCTCC 182
Query 181 TATGGTACACAATGGTTCATCAGGATGGTTCTGTTACTCAGACCTTTGGCTTCTTTTGGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TATGGTACACAATGGTTCATCAGGATGGTTCTGTTACTCAGACCTTTGGCTTCTTTTGGG 242
Query 241 AAAATGGAGTTCAAGGACTCCTCAACATTTGGCCAAGACCCACTTTGATTGCTTGGAAAA 300
| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 243 AGAATGGAGTTCAAGGACTTATCAACATATGGCCAAGACCCACTTTGATTGCTTGGAAAA 302
Query 301 TTATATTTTGCTATGGAGCATTTGAAGCTGCTCTTCAGCTACTTCTGCCTGGTAAAAGAG 360
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 303 TTATATTTTGCTATGGAGCATTTGAAGCTATTCTTCAGCTGCTTCTGCCTGGTAAAAGAG 362
Query 361 TTGAGGGTCCGATATCTCCAGCCGGAAACCGACCAGTTTATAAGGCCAATGGTGTGGCTG 420
|||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 363 TTGAGGGTCCAATATCTCCAGCCGGAAACCGACCAGTTTACAAGGCCAATGGTCTGGCTG 422
Query 421 CTTACTTTGTGACACTAGCTACCTATCTTGGTCTTTGGTGGTTTGGGATCTTCAACCCTG 480
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 423 CTTACTTTGTGACACTAGCAACCTATCTTGGTCTTTGGTGGTTTGGAATCTTCAACCCTG 482
Query 481 CAATTGTCTATGATCACTTGGGTGAAATATTTTCGGCACTAATATTTGGAAGCCTCATAT 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 483 CAATTGTCTATGATCACTTGGGTGAAATATTTTCGGCACTAATATTCGGAAGCTTCATAT 542
Query 541 TTTGTGTTTTGTTGTACATAAAAGGCCATGTTGCACCTTCATCAAATGACTCTGGTTCAT 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 543 TTTGTGTTTTGTTGTACATAAAAGGCCATGTTGCACCTTCATCAAGTGACTCTGGTTCAT 602
Query 601 GTGGTAACCTAATAATTGACTTCTATTGGGGCATGGAGTTGTACCCTCGAATTGGTAAGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GTGGTAACCTAATAATTGACTTCTATTGGGGCATGGAGTTGTACCCTCGAATTGGTAAGA 662
Query 661 ACTTTGACATCAAGGTGTTTACTAACTGCAGATTCGGAATGATGTCTTGGGCAGTTCTTG 720
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 663 GCTTTGACATCAAGGTGTTTACTAATTGCAGATTCGGAATGATGTCTTGGGCAGTTCTTG 722
Query 721 CAGTCACGTACTGCATAAAACAGTATGAAATAAATGGCAAAGTATCTGATTCAATGCTGG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CAGTCACGTACTGCATAAAACAGTATGAAATAAATGGCAAAGTATCTGATTCAATGCTGG 782
Query 781 TGAACACCATCTTGATGCTGGTGTATGTCACAAAATTCTTCTGGTGGGAAGCTGGTTATT 840
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TGAACACCATCCTGATGCTGGTGTATGTCACAAAATTCTTCTGGTGGGAAGCTGGTTATT 842
Query 841 GGAACACCATGGACATTGCACATGACCGAGCTGGCTTCTATATATGCTGGGGTTGTCTAG 900
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 843 GGAACACCATGGACATTGCACATGACCGAGCTGGATTCTATATATGCTGGGGTTGTCTAG 902
Query 901 TGTGGGTGCCTTCTGTGTACACTTCTCCAGGCATGTACCTTGTGAACCACCCCGTCGAAC 960
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 TGTGGGTGCCTTCTGTCTACACTTCTCCAGGCATGTACCTTGTGAACCACCCCGTCGAAC 962
Query 961 TTGGAACTCAGTTGGCAATATACATTCTAGTTGCAGGAATTCTCTGCATATACATAAACT 1020
| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 963 TCGGAACTCAGTTGGCAATATACATTCTCGTTGCAGGAATTCTGTGCATTTACATAAACT 1022
Query 1021 ATGACTGTGATAGACAAAGGCAAGAGTTCAGGAGGACAAACGGGAAATGTTTGGTTTGGG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 ATGACTGTGATAGACAAAGGCAAGAGTTCAGGAGGACAAACGGGAAATGTTTGGTTTGGG 1082
Query 1081 GCAGAGCGCCGTCAAAGATTGTGGCGTCGTATACTACAACATCTGGTGAAACTAAAACTA 1140
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GAAGGGCCCCGTCAAAGATTGTGGCGTCGTATACTACAACATCTGGTGAAACTAAAACTA 1142
Query 1141 GTCTTCTCTTAACGTCTGGATGGTGGGGTTTGGCTCGTCATTTCCATTATGTTCCTGAGA 1200
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1143 GTCTTCTCTTAACGTCTGGATGGTGGGGATTGGCTCGTCATTTCCATTATGTTCCTGAGA 1202
Query 1201 TCTTAAGTGCTTTCTTCTGGACTGTACCGGCTCTCTTCGATAATTTCTTGGCATACTTCT 1260
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1203 TCTTAAGTGCTTTCTTCTGGACCGTACCGGCTCTCTTCGATAACTTCTTGGCATACTTCT 1262
Query 1261 ACGTCATATTTCTCACCATTCTTCTCTTCGATCGAGCCAAGAGAGACGATGACCGATGCC 1320
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1263 ACGTCATATTTCTCACCCTTCTTCTCTTTGATCGAGCCAAGAGAGACGATGACCGATGCC 1322
Query 1321 GATCAAAGTATGGGAAATATTGGAAGCTGTACTGTGAGAAAGTCAAATACAGGATCATTC 1380
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1323 GATCAAAGTATGGGAAATATTGGAAGCTGTATTGTGAGAAAGTCAAATACAGGATCATTC 1382
Query 1381 CGGGGATTTATTGATTGTAACGAAGTCTGTTTTTCTC-tttt-t--ttA--A--TT--T- 1429
|||| |||||||||||||||||||||||||| ||||| |||| | ||| | || |
Sbjct 1383 CGGGAATTTATTGATTGTAACGAAGTCTGTTGTTCTCATTTTCTACTTATTACGTTAATT 1442
Query 1430 -GAACGTTGGAATCATCAAAAGACCGAG--AAAAGCAAAATTG-A--T--A--CGTTAGA 1479
||||||||||||||||||||||||| | |||| ||||| || | | | || ||||
Sbjct 1443 CGAACGTTGGAATCATCAAAAGACCGTGCCAAAA-CAAAAATGCAAATTGATGCGATAGA 1501
Query 1480 CATTATTTTGCTGATTTGTATGCTATAGGTTTTGAAATCTCTAGTTACGCTTATGtattt 1539
|||| |||||||||||||||||||||||||||| |||||||||| ||| |||||||||||
Sbjct 1502 CATTCTTTTGCTGATTTGTATGCTATAGGTTTTCAAATCTCTAGCTACACTTATGTATTT 1561
Query 1540 ccctagattatttaaatttagcctgccgtttt--aatttttat-atttgatattttgatt 1596
||||||||||| ||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct 1562 CCCTAGATTATC-AAAGTTAGCCTGCCGTTTTCTAATTTT-ATTATTTGATATTTTGATT 1619
Query 1597 atAC 1600
||||
Sbjct 1620 ATAC 1623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79015657830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5