BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474173
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50440.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1655 0.0
AT1G50450.1 | Symbols: | Saccharopine dehydrogenase | chr1:18... 156 6e-37
> AT1G50440.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:18685777-18687907 FORWARD LENGTH=1242
Length=1242
Score = 1655 bits (896), Expect = 0.0
Identities = 996/1043 (95%), Gaps = 12/1043 (1%)
Strand=Plus/Plus
Query 189 TTCACAGAAATTTTAGTATGTTTAAGAGATGCAATTAGTGCCTAGTGATGATGATGATGA 248
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 TTC-CAGAAATTTTAGTATGTTTAAGAGATGCAATTAGTGCCTAGTGATGATGATGATGA 260
Query 249 TAGGAAGGAACATATTTTATTCGACGAATCAACATCCTCGAACGAAATCGTAGCTGCGGA 308
||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 261 TAGAAAGGAACAGATTTTATTCGACGAATCAACATCCTCAAACGAAATCGTAGCAGCGGA 320
Query 309 AAGAGGAGATCGTGTTTTGGAGGAAGGACAAGTTTCAGAAATAGCTGAGACTGATGATGA 368
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 AAGAGGAGATCGTGTTGTGGAGGAAGGACAAGTTTCAGAAATAGCTGAGACTGATGATGA 380
Query 369 CGAAACTACACTTCTTGTTTCTGGAGATCAACCACAATGTCGAATTTGCCTTGATGTTGG 428
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CGAAACCACACTTCTTGTTTCTGGAGATCAACCACAATGTCGAATTTGCCTTGATGTTGG 440
Query 429 AGGAGAAGATCTGATTGCTCCGTGCAATTGTAAAGGTACTCAGAAGCACGTTCACAGATC 488
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 441 AGGGGAAGATCTGATTGCTCCGTGCAATTGTAAAGGTACTCAAAAGCACGTTCACAGATC 500
Query 489 TTGCCTTGATAATTGGCGTTCCACCAAGGAAGGTTTTGCATTTTCGCATTGTACAGAGTG 548
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TTGTCTCGATAATTGGCGCTCCACCAAGGAAGGTTTTGCATTTTCGCATTGTACAGAGTG 560
Query 549 TAGAGCCTTCTTCAAACTCCGAGCCAATGTACCTGCTGATAGATGGTGGTTGAGATTGAG 608
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 561 TAGAGCCTTTTTCAAACTCCGAGCCAATGTGCCTGCTGATAGATGGTGGTTGAGATTGAG 620
Query 609 ATTTCAGCTGCTGGTTGCTAGGGATCATGCCTTCATCTTCATTTCTGTCCAGATGATTGT 668
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 621 ATTTCAGCTGCTGGTTGCTAGAGATCATGCCTTCATCTTCATTTCTGTCCAGATGATTGT 680
Query 669 AGCATTCTTGGGGTTACTAGTTTACAAATTCTACGGTGAAGAACTACGAGAAATGTTTGG 728
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 681 AGCATTCTTGGGGTTACTAGTTTACAAGTTCTACGGTGAAGAACTACGAGAAATGTTTGG 740
Query 729 TTATGAGGAACATCCTTATGGGTTCTACACATTGGCTGTTTTGGCCATTGTCTTGGTAGG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTATGAGGAACATCCTTATGGGTTCTACACATTGGCTGTTTTGGCCATTGTCTTGGTAGG 800
Query 789 ACTGTTATACGGATTCTTCATCGCCATAATATGTGGTCAAAAGATCAACGAGCGGCATTA 848
|||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 801 ACTGCTATATGGATTCTTCATCGCCATAATATGTGGCCAAAAGATCAACGAGCGGCATTA 860
Query 849 CCATGTTCTCGCCAAACAAGAACTCACGAAGGAATATATAGTGGAAGACCGCGACTGCAA 908
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 861 CCATGTTCTCGCCAAACAAGAACTCACAAAGGAATATATAGTGGAAGACCGCGACTGCAA 920
Query 909 GAATGTTCCTGAGCTTGACCAGAGTCATGTGATGGAACTCAAAATGTTGGGACTTTATTG 968
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 921 GAATGTTCCTGAGCTTGATCAGAGTCATGTGATGGAACTAAAAATGTTGGGACTTTATTG 980
Query 969 AACATATAGTACAAGGAAAGAGCTTGTTGGATCTTTACTTTTCATGTCACCTGTAAATTA 1028
|||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 981 AACATATACTACAAGAAAAGAGCTTGTTGGATCTTTACTCTTCATGTCACCTGTAAATTA 1040
Query 1029 TATTCTTCATTGATTTATATGGTTGTTTCAACGAACGATTGTGTCATCGCCAAGTGGttt 1088
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1041 TATTCTTCATTGATTTATATGGTTGCTTCAACGAACGATTGTGTCATCTCCAAGTGGTTT 1100
Query 1089 tttgatttttttttt-----A--T-GTATCT-TT-TGATGAAAATGTTTATCTGTAAGAG 1138
||||||||||||||| | | |||| | || ||||||| |||||||||||| |||
Sbjct 1101 TTTGATTTTTTTTTTTTTTTAAGTTGTATATCTTCTGATGAACATGTTTATCTGTTCGAG 1160
Query 1139 TATACACATCAGACGCAAATTGGTTTACAAAGTAAAGTATCGATGATCAATCTATGTTTC 1198
|||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1161 TATACATATCAGAAGTAAATTGGTTTACAAAGTAAAGTATCGATGATCA-TCTATGTTTC 1219
Query 1199 TTCATCCTCGGTCGAACTCATAC 1221
||| ||||| |||||||||||||
Sbjct 1220 TTCTTCCTCAGTCGAACTCATAC 1242
> AT1G50450.1 | Symbols: | Saccharopine dehydrogenase | chr1:18687785-18690371
REVERSE LENGTH=1427
Length=1427
Score = 156 bits (84), Expect = 6e-37
Identities = 105/115 (91%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 1107 TATCTTTTGATGAAAATGTTTATCTGTAAGAGTATACACATCAGACGCAAATTGGTTTAC 1166
|||||| ||||||| |||||||||||| ||||||||| |||||| | ||||||||||||
Sbjct 1418 TATCTTCTGATGAACATGTTTATCTGTTCGAGTATACATATCAGAAGTAAATTGGTTTAC 1359
Query 1167 AAAGTAAAGTATCGATGATCAATCTATGTTTCTTCATCCTCGGTCGAACTCATAC 1221
||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct 1358 AAAGTAAAGTATCGATGATCA-TCTATGTTTCTTCTTCCTCAGTCGAACTCATAC 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5