BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474175 Length=2007 Score E Sequences producing significant alignments: (Bits) Value AT1G50460.1 | Symbols: HKL1, ATHKL1 | hexokinase-like 1 | chr1:... 2776 0.0 AT3G20040.1 | Symbols: ATHXK4, HKL2 | Hexokinase | chr3:6994894... 1210 0.0 > AT1G50460.1 | Symbols: HKL1, ATHKL1 | hexokinase-like 1 | chr1:18693684-18697659 FORWARD LENGTH=2074 Length=2074 Score = 2776 bits (1503), Expect = 0.0 Identities = 1815/1960 (93%), Gaps = 44/1960 (2%) Strand=Plus/Plus Query 1 AATCCATAAATCTCTT--TCTCTCTC-TGAATATTTAATCGTCACTTGACCGCCGGTAAG 57 |||||||||||||||| |||||||| | |||||||||||||||||||||||||| Sbjct 1 AATCCATAAATCTCTTCCTCTCTCTCTTTCTTATTTAATCGTCACTTGACCGCCGGT--- 57 Query 58 AAGAAACTCGAAAGTTTCAATCGTTTTCTAACCTTTGCCGGAGATTATTGAC-------C 110 ||||||||||| ||||| ||||||||| ||||| | ||||| |||||||||| | Sbjct 58 AAGAAACTCGAGAGTTTGAATCGTTTTTTAACCCTCGCCGGTGATTATTGACTGGAAAAC 117 Query 111 ATC-GA--AATCGAAGC----AG-TT----GTAGAGCAGTGACAGCTGAGC---AAAAAA 155 | | | ||||||||| || || ||||||||||||||||||||| |||||| Sbjct 118 ACCAAACGAATCGAAGCAGTTAGTTTACAGGTAGAGCAGTGACAGCTGAGCAAAAAAAAA 177 Query 156 GGCGGCGGAAAACAAAGTAGGT-GTtgatgatgatgatgatgatgatTACACAAATTCGT 214 |||||||||||| |||||| || || | |||||||||||| |||| | | ||| |||||| Sbjct 178 GGCGGCGGAAAAAAAAGTA-GTAGTAGTTGATGATGATGAAGATGGTGAAACAGATTCGT 236 Query 215 ATAGGGTTTTATAATCGACGGTGTTCGCTGTTCGTGAACTCTTTATTGGAGTAAGTAAAA 274 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 237 ATAGGGTTTTCTAATCGGCGGTGTTCGCTGTTCGTGAACTCTTTATTGGAGTAAGTAAAA 296 Query 275 TGTG-TA-TTTGTCtttttttG-GT-TCTG--TTTTTGG--GTG-GTTGTGATGGGGAAA 325 | | | | | ||| || | || ||||||| || ||| |||||||||| Sbjct 297 AGCGCCAGAGAGAGAGATATTGTGTATTTGTCTTTTTGGTTCTGTTTTGGGATGGGGAAA 356 Query 326 GTGGCGGTTGCGTTTGCGGCGGGGGCTGTTGTGGCGGCTTGTTCTGTTGCGGCGGTGATG 385 |||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 357 GTGGCGGTTGCGTTTGCGGCGGTTGCTGTTGTTGCGGCTTGTTCTGTTGCCGCGGTGATG 416 Query 386 GTTGGGAGGAGGATGGAGAGTCGGAGGAAATGGAGGACTGTGGTTGAGATTTTGAAAGAA 445 ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 417 GTTGGGAGGAGGATGAAGAGTCGGAGGAAATGGAGGACTGTTGTTGAGATTTTGAAAGAG 476 Query 446 TTGGAGGATGATTGTGATACTCCGGTGGGGAGGTTGAGGCAAGTGGTTGATGCTATGGCG 505 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 477 TTGGAGGATGATTGTGATACTCCGGTTGGGAGGTTGAGGCAAGTGGTTGATGCTATGGCC 536 Query 506 GTGGAGATGCACGCTGGATTGGCTTCTGAAGGAGGCTCTAAGCTTAAAATGCTCCTCACT 565 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 537 GTGGAGATGCACGCTGGTTTGGCTTCTGAAGGTGGCTCTAAGCTTAAAATGCTCCTCACT 596 Query 566 TTCGTCGATGATTTGCCCACTGGGAGGGAGAAAGGAACTTATTATGCACTTCACCTTGGA 625 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 597 TTCGTCGATGATTTGCCCACTGGGAGGGAGAAAGGTACTTATTATGCACTTCACCTTGGA 656 Query 626 GGCACTTATTTTAGGATTTTAAGAGTTCTTCTGGGTGGTCAAAGGTCTTATCTAGATGTT 685 ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 657 GGCACTTATTTTAGGATTTTAAGGGTTCTTCTGGGTGATCAAAGGTCTTATCTAGATGTT 716 Query 686 CAAGATGTCGAACGACACCCAATACCTTCACATTTGATGAATAGCACCAGCGAGGTTCTT 745 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 CAAGATGTTGAACGACACCCAATACCTTCACATTTGATGAATAGCACCAGCGAGGTTCTT 776 Query 746 TTCAACTTTCTCGCTTTTTCCTTGGAAAGGTTTATTGAAAAGGAGGAAAACGGGTCCAAT 805 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 777 TTCAACTTTCTCGCCTTTTCCTTGGAAAGGTTTATTGAAAAGGAGGAAAACGGGTCCGAT 836 Query 806 TCACAAGGTGTTAGAAGGGAACTTGCATTTACGTTTTCATTCCCTGTCAAGCATACTTCT 865 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 837 TCACAAGGTGTTAGAAGGGAACTTGCATTTACGTTCTCATTCCCTGTCAAGCATACTTCT 896 Query 866 ATTTCTTCAGGAGTTCTAATCAAATGGACCAAAGGTTTTGAGATTAGTGAAATGGTTGGA 925 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 897 ATTTCTTCAGGAGTTCTAATTAAATGGACCAAAGGTTTTGAGATTAGTGAAATGGTTGGG 956 Query 926 CAAGATATAGCTGAATGTCTACAAGGAGCGCTTAACAGAAGAGGCCTAGATATGCACGTT 985 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| Sbjct 957 CAAGATATAGCTGAATGTCTACAAGGAGCTCTGAACAGAAGAGGCCTAGATATGCATGTT 1016 Query 986 GGGGTTCTTGTGAATGATACTGTGGGAGCCTTGTCGCTTGGATATTATCATGATCCAGAC 1045 | || |||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 1017 GCGGCTCTTGTGAATGATACTGTTGGAGCCTTGTCGCTTGGATATTATCACGATCCAGAT 1076 Query 1046 ACACTTGTTGCGGTTGTGTTTGGAACAGGTAGTAATGCATGTTACTTGGAACGAACTGAT 1105 || ||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1077 ACGGTTGTTGCGGTTGTATTTGGAACAGGTAGTAATGCATGTTACTTGGAAAGAACCGAT 1136 Query 1106 GCCATAATTAAGTGTCAGGGTCTGCTTACAACTTCTGGGAGCATGGTGGTCAATATGGAG 1165 |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1137 GCCATAATCAAGTGTCAGGGTCTGCTTACAACTTCTGGAAGCATGGTGGTAAATATGGAG 1196 Query 1166 TGGGGAAATTTTTGGTCCTCACATTTGCCTAGAACTGCCTATGACATTGACTTGGATGCA 1225 |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| Sbjct 1197 TGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTTGGATGCA 1256 Query 1226 GAGAGTTCAAATGCAAATGATATGGGATTTGAGAAGATGATATCAGGAATGTATCTGGGT 1285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 GAGAGTTCAAATGCAAATGATATGGGATTTGAGAAGATGATATCAGGAATGTATCTGGGT 1316 Query 1286 GACATTGTTCGTAGAGTAATTCTTCGCATGTCACAAGAGTCCGATATCTTTGGACCCATC 1345 ||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||||| Sbjct 1317 GACATTGTTCGTAGAGTAATTCTCCGCATGTCAGAAGATTCTGATATCTTTGGACCCATC 1376 Query 1346 TCGCCCGTGTTATCTGAGCCTTACGTTCTAAGAACAAATTCAGTCTCAGCCATGCATGAA 1405 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1377 TCGCCCGTGTTATCTGAGCCTTACGTTCTAAGAACAAATTCAGTCTCAGCCATACATGAA 1436 Query 1406 GATGACACACCTGAGTTACAAGAAGTAGCAAGAATCTTGAAAGACTTGGGGGTATCAGAT 1465 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1437 GATGACACACCTGAGTTACAAGAAGTAGCAAGAATCTTGAAAGACATAGGGGTATCAGAT 1496 Query 1466 GTACCAGTGAAGGTGAGAAAACTAGTGGTGAAAATATGCGACGTGGTTACAAGAAGAGCA 1525 |||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1497 GTACCACTGAAGGTGAGAAAACTAGTGGTGAAAATATGCGATGTGGTTACACGAAGAGCA 1556 Query 1526 GGGAGGCTAGCAGCAGCAGGAATCGCAGGAATCTTGAAGAAGATAGGCCGAGATGGAAGT 1585 |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1557 GGGAGGCTTGCAGCAGCAGGAATAGCAGGAATCTTGAAGAAGATAGGCCGAGATGGAAGC 1616 Query 1586 GGAGGGA-TAACGAGCGGGAGAAGCAGAAGCGAAATCCAGATGCAGAAAAGAACAGTTGT 1644 || |||| | |||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1617 GG-GGGAATCACGAGCGGGAGAAGCAGAAGTGAAATCCAAATGCAGAAAAGAACAGTTGT 1675 Query 1645 TGCAGTAGAAGGAGGTTTGTACATGAATTACACCATGTTTAGGGAATACATGGAAGAAGC 1704 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1676 TGCGGTAGAAGGAGGTTTGTACATGAATTACACCATGTTTAGGGAATACATGGAAGAAGC 1735 Query 1705 TCTCGTTGAGATATTAGGAGAAGAAGTGAGTCAATACGTGGTGGTTAAAGCCATGGAAGA 1764 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1736 TCTCGTAGAGATACTAGGAGAAGAAGTGAGTCAATACGTGGTGGTTAAAGCCATGGAAGA 1795 Query 1765 TGGTTCTAGCATTGGCTCTGCTCTCCTCGTTGCCTCTTTACAGGCATGAATCATCATCGT 1824 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1796 TGGTTCTAGCATTGGCTCTGCTCTCCTCGTTGCCTCTTTACAGTCATGAATCATCATCGT 1855 Query 1825 CGTCGTTGGTATTAA-TGGTTTATATAATTGGTTATGTTCGTCCttgtgtgtgtaaataa 1883 ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||| Sbjct 1856 CGTCGTTCGTATTAAATGGTG-ATATAATTGGTTATGTTCGTCCTTGTGTGTGTATATAG 1914 Query 1884 attattcaatatttgtttgttgttaattattattat-att 1922 |||||||||||||||||||||||||||||| ||||| ||| Sbjct 1915 ATTATTCAATATTTGTTTGTTGTTAATTATAATTATTATT 1954 > AT3G20040.1 | Symbols: ATHXK4, HKL2 | Hexokinase | chr3:6994894-6998171 FORWARD LENGTH=2039 Length=2039 Score = 1210 bits (655), Expect = 0.0 Identities = 1201/1458 (82%), Gaps = 63/1458 (4%) Strand=Plus/Plus Query 355 TGTGGCGGCTTGTTCTGTTGCGGCGGTGATGGTTG-GGAGGAGGATGGAGA-GTCGGAGG 412 ||||| ||||||||| || ||| | ||||||| || | |||||||| || | | ||||| Sbjct 462 TGTGGTGGCTTGTTCAGTGGCGACTGTGATGG-TGAGAAGGAGGAT-GAAAGGGAGGAGG 519 Query 413 AAATGGAGGACTGTGGTTGAGATTT--TGAAAGAATTGGAGGATGATTGTGATACTCCGG 470 |||||||||| |||| || | ||| | || || |||||||| | |||||| || || Sbjct 520 AAATGGAGGAGGGTGG-TG-GGTTTACTTAAGGATTTGGAGGAAGCTTGTGAGACGCCTT 577 Query 471 TGGGGAGGTTGAGGCAAG-TGGTTGATGCTATGGCGGTGGAGATGCACGCTGGATTGGCT 529 | || |||||||||| || |||||||||| || || ||||||||||| ||||| |||| | Sbjct 578 TAGGAAGGTTGAGGC-AGATGGTTGATGCCATAGCTGTGGAGATGCAAGCTGGTTTGGTT 636 Query 530 TCTGAAGGAGGCTCTAAGCTTAAAATGCTCCTCACTTTCGTCGATGAT-TTGCCCACTGG 588 ||||||||||| || |||||||||||| | |||||||| || |||||| || |||| ||| Sbjct 637 TCTGAAGGAGGGTCAAAGCTTAAAATGTTGCTCACTTTTGTTGATGATCTT-CCCAATGG 695 Query 589 GAGGGAGAAAGGAACTTATTATGCACTTCACCTTGGAGGCACTTATTTTAGGAT-TTTAA 647 ||| |||| |||||| |||||||||||||| ||||||||| | || |||||||| | || Sbjct 696 GAGCGAGACAGGAACCTATTATGCACTTCATCTTGGAGGCTCCTACTTTAGGATAATAAA 755 Query 648 GAGTTCTTCTGGGTGGTCAAAGGTCTTATCTAGATGTTCAAGATGTCGAACGACA-CCCA 706 | |||| ||| ||||||||||| || | ||| || ||||||||||| |||||||| || Sbjct 756 G-GTTCATCTAGGTGGTCAAAGATCATCTCTTGAAGTTCAAGATGTTGAACGACATTCC- 813 Query 707 ATACCTTCA-CATTTGATGAATAGCACCAGCGAGGTTCTTTTCAACTTTCTCGCTTTTTC 765 ||||| || | ||||||||||||||| ||||||||||| ||| |||||||||| | || Sbjct 814 ATACCAACATC-TTTGATGAATAGCACTAGCGAGGTTCTCTTCGACTTTCTCGCATCATC 872 Query 766 CTTGGAAAGGTTTATTG-AAAAGGAGGAAAACGGGTCCA--AT-TCACAAGGTGTT-AGA 820 |||| | |||||||||| ||||| ||| |||| | || | |||||| | || | | Sbjct 873 CTTGCAGAGGTTTATTGAAAAAGAAGG-GAACGATTTCAGTTTGTCACAACCT-TTAAAA 930 Query 821 AGGGAACTTGCATTTACGTTTTCATTCCCTGTCAAGCATACTTCTATTTCTTCAGGAGTT 880 ||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||||||| Sbjct 931 AGGGAACTTGCGTTTACTTTTTCTTTCCCAGTCAAGCAGACATCCATCTCATCAGGAGTT 990 Query 881 CTAATCAAATGGACCAAAGGTTTTG-AGATTAGTGAAATGGTTGGACAAGATATAGCTGA 939 ||||| ||||||||||||||||||| | ||||||||||||| ||| |||| || ||||| Sbjct 991 CTAATTAAATGGACCAAAGGTTTTGCA-ATTAGTGAAATGGCTGGGGAAGACATTGCTGA 1049 Query 940 ATGTCTACAAGGAGCGCTT-AAC-AGAAGAGGCCTAGATATGCACGTTGGGGTTCTTGTG 997 |||||||||||||||| || ||| || ||||| |||||||| | ||||| | ||||||| Sbjct 1050 ATGTCTACAAGGAGCG-TTGAACAAG-AGAGGGCTAGATATTCGCGTTGCAGCTCTTGTG 1107 Query 998 AATGATACTG-TGGGAGCCTTGTCGC-TTGGATATTATCATGATCCAGACACACTTGTTG 1055 |||||||||| |||| || || || | ||||| ||| |||||| ||||||||| ||| || Sbjct 1108 AATGATACTGTTGGG-GCTTTATC-CTTTGGACATTTTCATGACCCAGACACAATTGCTG 1165 Query 1056 CGGTTGTGTTTGGAACAGGTAGTAATGCATGTTA-CTTGGAACGAACTGATGCCATAATT 1114 | ||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 1166 CTGTTGTCTTTGGAACAGGTAGTAATGCATGTTACCTT-GAACGAACTGATGCCATAATC 1224 Query 1115 AAGTGTCAGGGTCTGCTTACAACTTCTGGGAGCATGGTGGTCAATATGGAGTGGGGAAAT 1174 |||||||| || | || |||||||| ||||||||||||||||||||||||||||| Sbjct 1225 AAGTGTCAAAATCCACGCACGACTTCTGGAAGCATGGTGGTCAATATGGAGTGGGGAAAC 1284 Query 1175 TTTTGGTCCTCACATTTGCCTAGAACTGCCTATGACATTGACTTGGATGCAGAGAGT-TC 1233 |||||||| || | | |||| |||||| | |||||| |||| ||||||||||||||| | Sbjct 1285 TTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATG 1344 Query 1234 AAATGCAAATGATATGGGATTTGAGAAGATGATATCAGGAATGTATCTGGGTGACATTGT 1293 || | ||||||| ||||| ||||||||||||||| ||| ||||||||||| |||||||| Sbjct 1345 AATT-CAAATGACATGGGCTTTGAGAAGATGATAGGAGGGATGTATCTGGGCGACATTGT 1403 Query 1294 TCGTAGAGTAATTCTTCGCATGTCACAAGAGTCCGATATCTTTGGACCCATCTCGCCCGT 1353 || |||||||||||||| ||||||||||||||||| ||||||||||| ||||| || | Sbjct 1404 CCGCAGAGTAATTCTTCGAATGTCACAAGAGTCCGACATCTTTGGACCTATCTCATCCAT 1463 Query 1354 GTTATCTGA-GCCTTACGTTCTAAGAACAAATTCAGTCTCAGCCATGCATGAAGATGACA 1412 ||||| | ||||| |||||| ||||||||||| |||||||| |||||||||||||||| Sbjct 1464 TTTATCC-ACGCCTTTCGTTCTGAGAACAAATTCTGTCTCAGCAATGCATGAAGATGACA 1522 Query 1413 CA-CCTGAGTTACAAGAAGTAGCAAGAATCTTGAAAGACTTGGGGGTATCAGATGTACCA 1471 || || |||||||||||||||||| ||||||||||||| || ||||| ||||| |||||| Sbjct 1523 CATCC-GAGTTACAAGAAGTAGCACGAATCTTGAAAGATTTAGGGGTGTCAGAGGTACCA 1581 Query 1472 GTGAAGGTGAGAAAACTAGTGGTGAAAATATGCGACGTGGTTACAAGAAGAGCAGGGAGG 1531 |||||||||| ||||| || ||||| || ||||| || || ||| | ||||||| ||| Sbjct 1582 ATGAAGGTGAGGAAACTTGTAGTGAAGATCTGCGATGTAGTGACACGCAGAGCAGCTAGG 1641 Query 1532 CTAGCAGCAGCAGGAATCGCAGGAATCTTGAAGAAGATAGGCCGAGATGGAAGTGGAGGG 1591 ||||||||||||||||| |||||||||||||||||| |||| ||||||| || ||||| Sbjct 1642 CTAGCAGCAGCAGGAATTGCAGGAATCTTGAAGAAGGTAGGGAGAGATGGGAGCGGAGG- 1700 Query 1592 ATAACGAGCGGGAGAAGC-AGAAGCGAAATCCAGATGCAGAAAAGAACAGTTGTTGCAGT 1650 | | || | |||||| | |||| | || | ||| |||| ||||||| || ||||| Sbjct 1701 AGGA--AG-G--AGAAGCGATAAGC-AGAT--A-ATG-AGAA--GAACAGTGGTGGCAGT 1748 Query 1651 AGAAGGAGGTTTGTACATGAATTACACCATGTTTAGGGAATACATGGAAGAAGCTCTCGT 1710 ||||||||| |||| |||| |||| ||||| || ||||| ||||| |||||||| | Sbjct 1749 TGAAGGAGGTCTGTATTTGAACTACAGGATGTTCAGAGAATATATGGACGAAGCTCT-GA 1807 Query 1711 TGAGATAT--TAGGAGAAGAAGTGAG-TCAATACGTGGTGGTTAAAGCCATGGAAGATGG 1767 ||||||| | |||||||| ||| | |||| |||| ||||| || |||||||||||||| Sbjct 1808 -GAGATATACTGGGAGAAGATGTG-GCTCAACACGTAGTGGTGAAGGCCATGGAAGATGG 1865 Query 1768 TTCTAGCATTGGCTCTGC 1785 ||| |||||||||||||| Sbjct 1866 TTCCAGCATTGGCTCTGC 1883 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99447279645 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5