BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474175
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50460.1 | Symbols: HKL1, ATHKL1 | hexokinase-like 1 | chr1:... 2776 0.0
AT3G20040.1 | Symbols: ATHXK4, HKL2 | Hexokinase | chr3:6994894... 1210 0.0
> AT1G50460.1 | Symbols: HKL1, ATHKL1 | hexokinase-like 1 | chr1:18693684-18697659
FORWARD LENGTH=2074
Length=2074
Score = 2776 bits (1503), Expect = 0.0
Identities = 1815/1960 (93%), Gaps = 44/1960 (2%)
Strand=Plus/Plus
Query 1 AATCCATAAATCTCTT--TCTCTCTC-TGAATATTTAATCGTCACTTGACCGCCGGTAAG 57
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 1 AATCCATAAATCTCTTCCTCTCTCTCTTTCTTATTTAATCGTCACTTGACCGCCGGT--- 57
Query 58 AAGAAACTCGAAAGTTTCAATCGTTTTCTAACCTTTGCCGGAGATTATTGAC-------C 110
||||||||||| ||||| ||||||||| ||||| | ||||| |||||||||| |
Sbjct 58 AAGAAACTCGAGAGTTTGAATCGTTTTTTAACCCTCGCCGGTGATTATTGACTGGAAAAC 117
Query 111 ATC-GA--AATCGAAGC----AG-TT----GTAGAGCAGTGACAGCTGAGC---AAAAAA 155
| | | ||||||||| || || ||||||||||||||||||||| ||||||
Sbjct 118 ACCAAACGAATCGAAGCAGTTAGTTTACAGGTAGAGCAGTGACAGCTGAGCAAAAAAAAA 177
Query 156 GGCGGCGGAAAACAAAGTAGGT-GTtgatgatgatgatgatgatgatTACACAAATTCGT 214
|||||||||||| |||||| || || | |||||||||||| |||| | | ||| ||||||
Sbjct 178 GGCGGCGGAAAAAAAAGTA-GTAGTAGTTGATGATGATGAAGATGGTGAAACAGATTCGT 236
Query 215 ATAGGGTTTTATAATCGACGGTGTTCGCTGTTCGTGAACTCTTTATTGGAGTAAGTAAAA 274
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATAGGGTTTTCTAATCGGCGGTGTTCGCTGTTCGTGAACTCTTTATTGGAGTAAGTAAAA 296
Query 275 TGTG-TA-TTTGTCtttttttG-GT-TCTG--TTTTTGG--GTG-GTTGTGATGGGGAAA 325
| | | | | ||| || | || ||||||| || ||| ||||||||||
Sbjct 297 AGCGCCAGAGAGAGAGATATTGTGTATTTGTCTTTTTGGTTCTGTTTTGGGATGGGGAAA 356
Query 326 GTGGCGGTTGCGTTTGCGGCGGGGGCTGTTGTGGCGGCTTGTTCTGTTGCGGCGGTGATG 385
|||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 357 GTGGCGGTTGCGTTTGCGGCGGTTGCTGTTGTTGCGGCTTGTTCTGTTGCCGCGGTGATG 416
Query 386 GTTGGGAGGAGGATGGAGAGTCGGAGGAAATGGAGGACTGTGGTTGAGATTTTGAAAGAA 445
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 417 GTTGGGAGGAGGATGAAGAGTCGGAGGAAATGGAGGACTGTTGTTGAGATTTTGAAAGAG 476
Query 446 TTGGAGGATGATTGTGATACTCCGGTGGGGAGGTTGAGGCAAGTGGTTGATGCTATGGCG 505
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 477 TTGGAGGATGATTGTGATACTCCGGTTGGGAGGTTGAGGCAAGTGGTTGATGCTATGGCC 536
Query 506 GTGGAGATGCACGCTGGATTGGCTTCTGAAGGAGGCTCTAAGCTTAAAATGCTCCTCACT 565
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 537 GTGGAGATGCACGCTGGTTTGGCTTCTGAAGGTGGCTCTAAGCTTAAAATGCTCCTCACT 596
Query 566 TTCGTCGATGATTTGCCCACTGGGAGGGAGAAAGGAACTTATTATGCACTTCACCTTGGA 625
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 597 TTCGTCGATGATTTGCCCACTGGGAGGGAGAAAGGTACTTATTATGCACTTCACCTTGGA 656
Query 626 GGCACTTATTTTAGGATTTTAAGAGTTCTTCTGGGTGGTCAAAGGTCTTATCTAGATGTT 685
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 657 GGCACTTATTTTAGGATTTTAAGGGTTCTTCTGGGTGATCAAAGGTCTTATCTAGATGTT 716
Query 686 CAAGATGTCGAACGACACCCAATACCTTCACATTTGATGAATAGCACCAGCGAGGTTCTT 745
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CAAGATGTTGAACGACACCCAATACCTTCACATTTGATGAATAGCACCAGCGAGGTTCTT 776
Query 746 TTCAACTTTCTCGCTTTTTCCTTGGAAAGGTTTATTGAAAAGGAGGAAAACGGGTCCAAT 805
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 777 TTCAACTTTCTCGCCTTTTCCTTGGAAAGGTTTATTGAAAAGGAGGAAAACGGGTCCGAT 836
Query 806 TCACAAGGTGTTAGAAGGGAACTTGCATTTACGTTTTCATTCCCTGTCAAGCATACTTCT 865
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 837 TCACAAGGTGTTAGAAGGGAACTTGCATTTACGTTCTCATTCCCTGTCAAGCATACTTCT 896
Query 866 ATTTCTTCAGGAGTTCTAATCAAATGGACCAAAGGTTTTGAGATTAGTGAAATGGTTGGA 925
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATTTCTTCAGGAGTTCTAATTAAATGGACCAAAGGTTTTGAGATTAGTGAAATGGTTGGG 956
Query 926 CAAGATATAGCTGAATGTCTACAAGGAGCGCTTAACAGAAGAGGCCTAGATATGCACGTT 985
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 957 CAAGATATAGCTGAATGTCTACAAGGAGCTCTGAACAGAAGAGGCCTAGATATGCATGTT 1016
Query 986 GGGGTTCTTGTGAATGATACTGTGGGAGCCTTGTCGCTTGGATATTATCATGATCCAGAC 1045
| || |||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1017 GCGGCTCTTGTGAATGATACTGTTGGAGCCTTGTCGCTTGGATATTATCACGATCCAGAT 1076
Query 1046 ACACTTGTTGCGGTTGTGTTTGGAACAGGTAGTAATGCATGTTACTTGGAACGAACTGAT 1105
|| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1077 ACGGTTGTTGCGGTTGTATTTGGAACAGGTAGTAATGCATGTTACTTGGAAAGAACCGAT 1136
Query 1106 GCCATAATTAAGTGTCAGGGTCTGCTTACAACTTCTGGGAGCATGGTGGTCAATATGGAG 1165
|||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1137 GCCATAATCAAGTGTCAGGGTCTGCTTACAACTTCTGGAAGCATGGTGGTAAATATGGAG 1196
Query 1166 TGGGGAAATTTTTGGTCCTCACATTTGCCTAGAACTGCCTATGACATTGACTTGGATGCA 1225
|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 1197 TGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTTGGATGCA 1256
Query 1226 GAGAGTTCAAATGCAAATGATATGGGATTTGAGAAGATGATATCAGGAATGTATCTGGGT 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GAGAGTTCAAATGCAAATGATATGGGATTTGAGAAGATGATATCAGGAATGTATCTGGGT 1316
Query 1286 GACATTGTTCGTAGAGTAATTCTTCGCATGTCACAAGAGTCCGATATCTTTGGACCCATC 1345
||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||
Sbjct 1317 GACATTGTTCGTAGAGTAATTCTCCGCATGTCAGAAGATTCTGATATCTTTGGACCCATC 1376
Query 1346 TCGCCCGTGTTATCTGAGCCTTACGTTCTAAGAACAAATTCAGTCTCAGCCATGCATGAA 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1377 TCGCCCGTGTTATCTGAGCCTTACGTTCTAAGAACAAATTCAGTCTCAGCCATACATGAA 1436
Query 1406 GATGACACACCTGAGTTACAAGAAGTAGCAAGAATCTTGAAAGACTTGGGGGTATCAGAT 1465
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1437 GATGACACACCTGAGTTACAAGAAGTAGCAAGAATCTTGAAAGACATAGGGGTATCAGAT 1496
Query 1466 GTACCAGTGAAGGTGAGAAAACTAGTGGTGAAAATATGCGACGTGGTTACAAGAAGAGCA 1525
|||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1497 GTACCACTGAAGGTGAGAAAACTAGTGGTGAAAATATGCGATGTGGTTACACGAAGAGCA 1556
Query 1526 GGGAGGCTAGCAGCAGCAGGAATCGCAGGAATCTTGAAGAAGATAGGCCGAGATGGAAGT 1585
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1557 GGGAGGCTTGCAGCAGCAGGAATAGCAGGAATCTTGAAGAAGATAGGCCGAGATGGAAGC 1616
Query 1586 GGAGGGA-TAACGAGCGGGAGAAGCAGAAGCGAAATCCAGATGCAGAAAAGAACAGTTGT 1644
|| |||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1617 GG-GGGAATCACGAGCGGGAGAAGCAGAAGTGAAATCCAAATGCAGAAAAGAACAGTTGT 1675
Query 1645 TGCAGTAGAAGGAGGTTTGTACATGAATTACACCATGTTTAGGGAATACATGGAAGAAGC 1704
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TGCGGTAGAAGGAGGTTTGTACATGAATTACACCATGTTTAGGGAATACATGGAAGAAGC 1735
Query 1705 TCTCGTTGAGATATTAGGAGAAGAAGTGAGTCAATACGTGGTGGTTAAAGCCATGGAAGA 1764
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TCTCGTAGAGATACTAGGAGAAGAAGTGAGTCAATACGTGGTGGTTAAAGCCATGGAAGA 1795
Query 1765 TGGTTCTAGCATTGGCTCTGCTCTCCTCGTTGCCTCTTTACAGGCATGAATCATCATCGT 1824
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1796 TGGTTCTAGCATTGGCTCTGCTCTCCTCGTTGCCTCTTTACAGTCATGAATCATCATCGT 1855
Query 1825 CGTCGTTGGTATTAA-TGGTTTATATAATTGGTTATGTTCGTCCttgtgtgtgtaaataa 1883
||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1856 CGTCGTTCGTATTAAATGGTG-ATATAATTGGTTATGTTCGTCCTTGTGTGTGTATATAG 1914
Query 1884 attattcaatatttgtttgttgttaattattattat-att 1922
|||||||||||||||||||||||||||||| ||||| |||
Sbjct 1915 ATTATTCAATATTTGTTTGTTGTTAATTATAATTATTATT 1954
> AT3G20040.1 | Symbols: ATHXK4, HKL2 | Hexokinase | chr3:6994894-6998171
FORWARD LENGTH=2039
Length=2039
Score = 1210 bits (655), Expect = 0.0
Identities = 1201/1458 (82%), Gaps = 63/1458 (4%)
Strand=Plus/Plus
Query 355 TGTGGCGGCTTGTTCTGTTGCGGCGGTGATGGTTG-GGAGGAGGATGGAGA-GTCGGAGG 412
||||| ||||||||| || ||| | ||||||| || | |||||||| || | | |||||
Sbjct 462 TGTGGTGGCTTGTTCAGTGGCGACTGTGATGG-TGAGAAGGAGGAT-GAAAGGGAGGAGG 519
Query 413 AAATGGAGGACTGTGGTTGAGATTT--TGAAAGAATTGGAGGATGATTGTGATACTCCGG 470
|||||||||| |||| || | ||| | || || |||||||| | |||||| || ||
Sbjct 520 AAATGGAGGAGGGTGG-TG-GGTTTACTTAAGGATTTGGAGGAAGCTTGTGAGACGCCTT 577
Query 471 TGGGGAGGTTGAGGCAAG-TGGTTGATGCTATGGCGGTGGAGATGCACGCTGGATTGGCT 529
| || |||||||||| || |||||||||| || || ||||||||||| ||||| |||| |
Sbjct 578 TAGGAAGGTTGAGGC-AGATGGTTGATGCCATAGCTGTGGAGATGCAAGCTGGTTTGGTT 636
Query 530 TCTGAAGGAGGCTCTAAGCTTAAAATGCTCCTCACTTTCGTCGATGAT-TTGCCCACTGG 588
||||||||||| || |||||||||||| | |||||||| || |||||| || |||| |||
Sbjct 637 TCTGAAGGAGGGTCAAAGCTTAAAATGTTGCTCACTTTTGTTGATGATCTT-CCCAATGG 695
Query 589 GAGGGAGAAAGGAACTTATTATGCACTTCACCTTGGAGGCACTTATTTTAGGAT-TTTAA 647
||| |||| |||||| |||||||||||||| ||||||||| | || |||||||| | ||
Sbjct 696 GAGCGAGACAGGAACCTATTATGCACTTCATCTTGGAGGCTCCTACTTTAGGATAATAAA 755
Query 648 GAGTTCTTCTGGGTGGTCAAAGGTCTTATCTAGATGTTCAAGATGTCGAACGACA-CCCA 706
| |||| ||| ||||||||||| || | ||| || ||||||||||| |||||||| ||
Sbjct 756 G-GTTCATCTAGGTGGTCAAAGATCATCTCTTGAAGTTCAAGATGTTGAACGACATTCC- 813
Query 707 ATACCTTCA-CATTTGATGAATAGCACCAGCGAGGTTCTTTTCAACTTTCTCGCTTTTTC 765
||||| || | ||||||||||||||| ||||||||||| ||| |||||||||| | ||
Sbjct 814 ATACCAACATC-TTTGATGAATAGCACTAGCGAGGTTCTCTTCGACTTTCTCGCATCATC 872
Query 766 CTTGGAAAGGTTTATTG-AAAAGGAGGAAAACGGGTCCA--AT-TCACAAGGTGTT-AGA 820
|||| | |||||||||| ||||| ||| |||| | || | |||||| | || | |
Sbjct 873 CTTGCAGAGGTTTATTGAAAAAGAAGG-GAACGATTTCAGTTTGTCACAACCT-TTAAAA 930
Query 821 AGGGAACTTGCATTTACGTTTTCATTCCCTGTCAAGCATACTTCTATTTCTTCAGGAGTT 880
||||||||||| ||||| ||||| ||||| |||||||| || || || || |||||||||
Sbjct 931 AGGGAACTTGCGTTTACTTTTTCTTTCCCAGTCAAGCAGACATCCATCTCATCAGGAGTT 990
Query 881 CTAATCAAATGGACCAAAGGTTTTG-AGATTAGTGAAATGGTTGGACAAGATATAGCTGA 939
||||| ||||||||||||||||||| | ||||||||||||| ||| |||| || |||||
Sbjct 991 CTAATTAAATGGACCAAAGGTTTTGCA-ATTAGTGAAATGGCTGGGGAAGACATTGCTGA 1049
Query 940 ATGTCTACAAGGAGCGCTT-AAC-AGAAGAGGCCTAGATATGCACGTTGGGGTTCTTGTG 997
|||||||||||||||| || ||| || ||||| |||||||| | ||||| | |||||||
Sbjct 1050 ATGTCTACAAGGAGCG-TTGAACAAG-AGAGGGCTAGATATTCGCGTTGCAGCTCTTGTG 1107
Query 998 AATGATACTG-TGGGAGCCTTGTCGC-TTGGATATTATCATGATCCAGACACACTTGTTG 1055
|||||||||| |||| || || || | ||||| ||| |||||| ||||||||| ||| ||
Sbjct 1108 AATGATACTGTTGGG-GCTTTATC-CTTTGGACATTTTCATGACCCAGACACAATTGCTG 1165
Query 1056 CGGTTGTGTTTGGAACAGGTAGTAATGCATGTTA-CTTGGAACGAACTGATGCCATAATT 1114
| ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1166 CTGTTGTCTTTGGAACAGGTAGTAATGCATGTTACCTT-GAACGAACTGATGCCATAATC 1224
Query 1115 AAGTGTCAGGGTCTGCTTACAACTTCTGGGAGCATGGTGGTCAATATGGAGTGGGGAAAT 1174
|||||||| || | || |||||||| |||||||||||||||||||||||||||||
Sbjct 1225 AAGTGTCAAAATCCACGCACGACTTCTGGAAGCATGGTGGTCAATATGGAGTGGGGAAAC 1284
Query 1175 TTTTGGTCCTCACATTTGCCTAGAACTGCCTATGACATTGACTTGGATGCAGAGAGT-TC 1233
|||||||| || | | |||| |||||| | |||||| |||| ||||||||||||||| |
Sbjct 1285 TTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATG 1344
Query 1234 AAATGCAAATGATATGGGATTTGAGAAGATGATATCAGGAATGTATCTGGGTGACATTGT 1293
|| | ||||||| ||||| ||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1345 AATT-CAAATGACATGGGCTTTGAGAAGATGATAGGAGGGATGTATCTGGGCGACATTGT 1403
Query 1294 TCGTAGAGTAATTCTTCGCATGTCACAAGAGTCCGATATCTTTGGACCCATCTCGCCCGT 1353
|| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| || |
Sbjct 1404 CCGCAGAGTAATTCTTCGAATGTCACAAGAGTCCGACATCTTTGGACCTATCTCATCCAT 1463
Query 1354 GTTATCTGA-GCCTTACGTTCTAAGAACAAATTCAGTCTCAGCCATGCATGAAGATGACA 1412
||||| | ||||| |||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 1464 TTTATCC-ACGCCTTTCGTTCTGAGAACAAATTCTGTCTCAGCAATGCATGAAGATGACA 1522
Query 1413 CA-CCTGAGTTACAAGAAGTAGCAAGAATCTTGAAAGACTTGGGGGTATCAGATGTACCA 1471
|| || |||||||||||||||||| ||||||||||||| || ||||| ||||| ||||||
Sbjct 1523 CATCC-GAGTTACAAGAAGTAGCACGAATCTTGAAAGATTTAGGGGTGTCAGAGGTACCA 1581
Query 1472 GTGAAGGTGAGAAAACTAGTGGTGAAAATATGCGACGTGGTTACAAGAAGAGCAGGGAGG 1531
|||||||||| ||||| || ||||| || ||||| || || ||| | ||||||| |||
Sbjct 1582 ATGAAGGTGAGGAAACTTGTAGTGAAGATCTGCGATGTAGTGACACGCAGAGCAGCTAGG 1641
Query 1532 CTAGCAGCAGCAGGAATCGCAGGAATCTTGAAGAAGATAGGCCGAGATGGAAGTGGAGGG 1591
||||||||||||||||| |||||||||||||||||| |||| ||||||| || |||||
Sbjct 1642 CTAGCAGCAGCAGGAATTGCAGGAATCTTGAAGAAGGTAGGGAGAGATGGGAGCGGAGG- 1700
Query 1592 ATAACGAGCGGGAGAAGC-AGAAGCGAAATCCAGATGCAGAAAAGAACAGTTGTTGCAGT 1650
| | || | |||||| | |||| | || | ||| |||| ||||||| || |||||
Sbjct 1701 AGGA--AG-G--AGAAGCGATAAGC-AGAT--A-ATG-AGAA--GAACAGTGGTGGCAGT 1748
Query 1651 AGAAGGAGGTTTGTACATGAATTACACCATGTTTAGGGAATACATGGAAGAAGCTCTCGT 1710
||||||||| |||| |||| |||| ||||| || ||||| ||||| |||||||| |
Sbjct 1749 TGAAGGAGGTCTGTATTTGAACTACAGGATGTTCAGAGAATATATGGACGAAGCTCT-GA 1807
Query 1711 TGAGATAT--TAGGAGAAGAAGTGAG-TCAATACGTGGTGGTTAAAGCCATGGAAGATGG 1767
||||||| | |||||||| ||| | |||| |||| ||||| || ||||||||||||||
Sbjct 1808 -GAGATATACTGGGAGAAGATGTG-GCTCAACACGTAGTGGTGAAGGCCATGGAAGATGG 1865
Query 1768 TTCTAGCATTGGCTCTGC 1785
||| ||||||||||||||
Sbjct 1866 TTCCAGCATTGGCTCTGC 1883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99447279645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5