BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474193
Length=2097
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50620.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 2534 0.0
AT3G20280.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 283 4e-75
> AT1G50620.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:18748537-18751338 FORWARD LENGTH=2223
Length=2223
Score = 2534 bits (1372), Expect = 0.0
Identities = 1676/1818 (92%), Gaps = 40/1818 (2%)
Strand=Plus/Plus
Query 1 ATGGATGTGGCGATTA--G-TGATGTACCGGAGAATCTTGAATCTGTTGTAGAAACGAGA 57
||||||||||| |||| | ||||||||||| |||||| ||||| |||| ||||| ||||
Sbjct 1 ATGGATGTGGCCATTAGTGATGATGTACCGGTGAATCTCGAATCGGTTGAAGAAAAGAGA 60
Query 58 GATGAAGAAAATGTGGAAGAATCGCCGGT---GAAGAAGAAGCCACGTTTTGATGAAGAA 114
|||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 61 GATGAAGAAACTGTGGAAGAATCGCCGGTGAAGAAGAAGAAGCCACGTTTTGATGAGGAA 120
Query 115 GTGAATAGAGTGGCGGAGATTGTATTGGTGTTATCGGCATTGCGGAAGATTCGAGGTGGG 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGAATAGAGTGGCGGAGATTGTATTGGTGTTATCGGCATTGCGGAAGATTCGAGGTGGG 180
Query 175 AAAACTCCGACTGAATTGGAGATTGAGCTTATGGTTGAAGCTAAATCGAAATTGGTTGAC 234
||| | ||||| |||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 181 AAACCCCCGACGGAATTGGAGATTGATCTAATGGTGGAAGCTAAATCGAAATTGGTTGAC 240
Query 235 ATGTGTCAAGAGTTTACTCCC-AGAGATATTATTGGTATTGATGCTATTGGAGCTGTCAT 293
||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 241 ATGTGTCAAGAGTTTACTCCCAAG-GATATTATTGGTGTTGATGCTATTGGAGCTGTCAT 299
Query 294 TGAAGATCTGGGTTTGAATGGTAAGCTTAAAGACCAGCGATTAGGGTTTCGAGCTCCTAA 353
||||||||| ||||| |||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 300 TGAAGATCTCGGTTTCAATGGTAAGCTTAAGGATCAGAGATTAGGGTTTCGAGCTCCTAA 359
Query 354 ATTAACCATCTCTGAGAAGCTGTCTCTTGGGAAGAGAAAGATGGAAGAATTGAAAAAAG- 412
||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||||
Sbjct 360 ATTAACCATCTCTGAGAAGCTATCTCTTGGCAAGAGAAAGATGGAGGAATTG-AAAAAGA 418
Query 413 CCCCAATAGTATCCACTACCTATACATCTCCAGC---AAGTAATGTGTCTATGGCGCATC 469
||| ||||||| ||||| | |||||||||||| || |||||| |||||||||||||
Sbjct 419 ATCCAGTAGTATCAACTACATCTACATCTCCAGCAGTAAATAATGTTTCTATGGCGCATC 478
Query 470 AGTGGCCTAATAGCGATATGAAGGCATCCACTAGTTCTGTTAATGCATCT-G--G----- 521
|||||||||||||||| |||||||||||| |||||||||||||||||||| | |
Sbjct 479 AGTGGCCTAATAGCGAGATGAAGGCATCCGCTAGTTCTGTTAATGCATCTGGAAGCCATT 538
Query 522 A----AGGGAAGCATCAGGAATAACACAAGCTAGAATGGAGAGACCGCAGTTTAAGTCAG 577
| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 ACGTTAGGGAAGCGTCAGGAATAACACAAGCTAGAATGGAGAGACCACAGTTTAAGTCAG 598
Query 578 ATATGCATACCGGTACTTCTCAGGGACCAGCAGTTACTGCCGGAAATTACTTTGGGAATA 637
|| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 599 ATTTGCATACCGGTACTTCTCAGGGACCAGCAGTTCCTGCCGGAAATTATTTTGGGAATA 658
Query 638 CTACATCTTGGTCTGCCCAACCTCATTCCAGTTCCTCCACCATATCATTTGGTACTGCAT 697
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 659 CTACAACTTGGTCTGCCCAACCTCATTCCAGTACCTCCACCATATCATTTGGTACTGCAT 718
Query 698 CGGATAGCAAGGTTCCTGTTCAGGGCTCTTCCAGAATCTCAGATCCGAGCTTTAGACCAT 757
| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 719 CAGATAGCAAGGTTCCTGTTCCGAGTTCTTCCAGAATCTCAGATCCGAGCTTTAGACCAT 778
Query 758 TTATGTCTCAAACTCCACCAGGTCCATTCCCAGGCATGAAAGGGGTGACTTATGGTCAAA 817
||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 779 TTATGTCTCAAACTCCACCAGGTGCATTCCCAGGCATGAAAGGAGCAACTTATGGTCAAA 838
Query 818 CTTCTTCATCTTTTGGAAACAACCACCATGCTGAAATTGCTAAGTTAATCCATAAAGTTC 877
|||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 839 CTTCTTCACCTTTTGGAAACAACAACCATGCTGAAATTGCTAAGTTAATCCACAAAGTTC 898
Query 878 TGCAACCGCAGGCTAAACAAAATCTCTTGTGGAACCCACCTTCAAGAGAGTACATGAGTA 937
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 TGCAACCGCGGGCTAAACAAAATCTCTTGTGGAACCCACCTTCAAGAGAATACATGAGTA 958
Query 938 AAGCAATGACATGCCAAATGTGTCAAGGAACTATCAATGAAGTAGAAACGGTGCTAATCT 997
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 959 AAGCAATGACATGCCAAATATGTCAAGGAACTATCAATGAAATAGAAACGGTGCTAATCT 1018
Query 998 GTGATGCTTGTGAAAAAGGG-TATCACTTGAAATGTCTACAAGCTCACAATATAAAAGGT 1056
|||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1019 GTGATGCTTGTG-AAAAGGGATATCACTTGAAATGTCTACATGCTCACAATATAAAAGGT 1077
Query 1057 GTTCCGAAATCTGAATGGCATTGCTCAAGATGTGTGCAGTTATACAATGGCAAGTCTTTT 1116
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1078 GTTCCGAAATCTGAATGGCATTGCTCAAGATGTGTGCAATTATACAATGGCAAGTCTTTT 1137
Query 1117 CCTCCTAAATACGGCCGTGTCATGAGAAGCGCCACTACAGCAAAAATGTCTTCTAGTACA 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CCTCCTAAATACGGCCGTGTCATGAGAAGCGCCACTACAGCAAAAATGTCTTCTAGTACA 1197
Query 1177 GCCGAAGTTCAGTTACCCGCAGAGAAGAGGGTTGGTAAAATGGATCAAAAGGTTAGTCAA 1236
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1198 GCCGAAGTTCAATTACCCGCAGAGAAGGGGGTTGGTAAAATGGATCAAAAGGTTAGTCAA 1257
Query 1237 GAGGCAATGCCACATCTCGAGACAGCAAAACCAACTAAGGATTCAGCTATGGAACAAACA 1296
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GAGGGAATGCCACATCTCGAGACAGCAAAACCAACTAAGGATTCAGCTATGGAACAAACA 1317
Query 1297 GTTGAAG---A---TGCAGCTATGGAA-CAAACAGTTGAAGATGCAGCTATGAATCCAAT 1349
||||||| | || ||||||| || | || ||||||| | |||||||| | |||
Sbjct 1318 GTTGAAGCTGAAGATGTAGCTATG-AATCCAATAGTTGAAAA---AGCTATGAGTGAAAT 1373
Query 1350 AGTTGAAGCTGAAGGTGAAGCTATGAATCCAACAGTTGAAGCTGAAGATGGAGCTATGAA 1409
|| ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1374 GGTGGAAGCTGAAGGTGCAGCTATTAATCCAATAGTTGAAGCTGAAGATGGAGCTATGAA 1433
Query 1410 TCCAATAGTTGAAAAAGCTATGAGCCAAATAGTTGAAGCTGAAGATGCAGCTATTAATCA 1469
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1434 TCCAATAGTTGAAAAAGCAATGAGTCAAATAGTTGAAGCTGAAGATGCAGCTATTAATCA 1493
Query 1470 AGCAGTTGATGCTAACTTAAAAACACAATTTCCTATAGCAAACGATGATGCTGAGTGTGA 1529
|||||||||||||||||| |||||||| ||| | || |||||||||||||||| ||||
Sbjct 1494 AGCAGTTGATGCTAACTTTCAAACACAAGCTCCCACAGGAAACGATGATGCTGAGAGTGA 1553
Query 1530 TGATCCTTCAGAACCAGTATCTCACTCAGAGACTCTTAATC-TGCCAGAACCAGAGAAAA 1588
||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 1554 TGATCCTTCGGAACCAGTATCTCACTCAGAGACTCTTAATCCT-CCAGAACTAGAGAAAA 1612
Query 1589 AAGAAGTTCTGAGCAAAAATCCTACTGAGAGATGTGTTTCCGCAAATAGTCAAGATAAAA 1648
|||||||| |||| ||| || |||||||||||| |||||||||| || ||||||||||||
Sbjct 1613 AAGAAGTTATGAGGAAAGATGCTACTGAGAGATCTGTTTCCGCAGATTGTCAAGATAAAA 1672
Query 1649 ACTCAAAGATCATAGCTGAATCATCATTACAAGAGGAGAATTCAGCTTCTCAGACAGAGA 1708
|||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1673 ACTCAAAGATCATAGCGGAATCCTCATTACAAGAGGAGATTTCAGCTTCTCAGACAGAGA 1732
Query 1709 ACTCACCAACCCAGCTTCCTTTGCAATCCAACACAGATCATTCCCAACCGCAGAACATGA 1768
||||||||||||||| ||||| |||||| |||||||||||||||||| |||||| | ||
Sbjct 1733 ACTCACCAACCCAGCCTCCTTCGCAATCTGACACAGATCATTCCCAACAGCAGAAGACGA 1792
Query 1769 CACCAAATGTGGAAGAGG 1786
|||||||||| |||||||
Sbjct 1793 CACCAAATGTCGAAGAGG 1810
Score = 536 bits (290), Expect = 3e-151
Identities = 382/425 (90%), Gaps = 12/425 (3%)
Strand=Plus/Plus
Query 1679 AAGAGGAGAATTCAGCTTCTCAGACAGAGAACTCACCAACCCAGCTTCCTTTGCAATCCA 1738
|||||||||| |||||||||||| ||||||||||||||||||||| ||||| ||||||||
Sbjct 1805 AAGAGGAGAAATCAGCTTCTCAGGCAGAGAACTCACCAACCCAGCCTCCTTCGCAATCCA 1864
Query 1739 ACACAGATCA-TTCCCAACCGCAGAACATGACACCAAATGTGGAAGAGG---CTATACAG 1794
|||||||||| |||||||| ||| ||||||||||||||||| ||||||| |||||| |
Sbjct 1865 ACACAGATCATTTCCCAACAGCATAACATGACACCAAATGTCGAAGAGGCTACTATACCG 1924
Query 1795 AAAAATGTCACAGAAAATCCAGAGGAAGACAAAAGCTTTTAAATGTTTCAGACAAAAGTT 1854
|||||||||||||||||||||||||| |||||||||| || |||| ||||||||||||||
Sbjct 1925 AAAAATGTCACAGAAAATCCAGAGGACGACAAAAGCTGTT-AATGGTTCAGACAAAAGTT 1983
Query 1855 GCAGGAATCAGAATTCACTCTGTCCACGGCAGTCAGTACTCGCACTCTATTTGGTCCTCA 1914
|||| ||| ||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 1984 ACAGGGGGCAG--CTCACTCTGTCCACAACAGTCGGTATTCGCACTCTATTTGGTCCTCA 2041
Query 1915 AGTATATATAAAGTAAGTGATGATGTCTTTGATATAACCTTTTTGGGGTAGGTTGAATTA 1974
||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||
Sbjct 2042 AGTATATATAAAGTAAGTGATGAAGTCTTTGATTTAACC-TTTTGGGGTAGGTTGAATTT 2100
Query 1975 CTAAATGTTTTATTCTATGAAGTGC--GTGTGGCCGTTCAATTTTCTGAGCATAAGTAGT 2032
|||||| | ||||||||||||||| |||||| | |||||||||||||||| |||||||
Sbjct 2101 CTAAAT-CTATATTCTATGAAGTGCGTGTGTGGGCTTTCAATTTTCTGAGCAGAAGTAGT 2159
Query 2033 GACTGATTTAGTTTAGCTTGAACCTTTTTTAAGACACTTTGTGAAATATTTCCTTAATTC 2092
||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 2160 GACTGATTTAGTTTAGCTTGAAC-TTTTTTAAGACACTTTGTGAAATAAATCCTGAATTC 2218
Query 2093 ACTGT 2097
|||||
Sbjct 2219 ACTGT 2223
Score = 141 bits (76), Expect = 3e-32
Identities = 104/117 (89%), Gaps = 4/117 (3%)
Strand=Plus/Plus
Query 1368 AGCTAT-GAATCCAACAGTTGAAGCTGAAGATGGAGCTATGAATCCAATAGTTGAAAAAG 1426
|||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1302 AGCTATGGAA-CAAACAGTTGAAGCTGAAGATGTAGCTATGAATCCAATAGTTGAAAAAG 1360
Query 1427 CTATGAGCCAAATAGTTGAAGCTGAAGATGCAGCTATTAATC-AAGCAGTTGATGCT 1482
||||||| |||| || |||||||||| |||||||||||||| || |||||| |||
Sbjct 1361 CTATGAGTGAAATGGTGGAAGCTGAAGGTGCAGCTATTAATCCAAT-AGTTGAAGCT 1416
> AT3G20280.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr3:7071193-7074641 FORWARD LENGTH=2815
Length=2815
Score = 283 bits (153), Expect = 4e-75
Identities = 288/353 (82%), Gaps = 10/353 (3%)
Strand=Plus/Plus
Query 842 ACCATGCTGAAATTGCTAAGTTAATCCATAAAGTTCTGCAACCGCAGGCTAAACAAAAT- 900
||||| |||||||||||||| ||||||||||| |||||||||| | || ||||||| ||
Sbjct 1100 ACCATACTGAAATTGCTAAGATAATCCATAAATTTCTGCAACCACGGGTTAAACAATATC 1159
Query 901 CTCTTGTGGAACCCACCTTCAAGAGAGTACATGAGTAAAGCAATGACATGCCAAATGTGT 960
|| |||||||| ||||||||||||||||| ||||| | |||||| ||||||| || |||
Sbjct 1160 CT-TTGTGGAATCCACCTTCAAGAGAGTATATGAGCAGGGCAATGGCATGCCAGATATGT 1218
Query 961 CAAGGAACTATCAATGAAGTAGAAACGGTGCTAATCTGTGATGCTTGTGAAAAAGGGTAT 1020
||| || ||||||||| | || || | || || |||||||| |||||||||| ||
Sbjct 1219 GAAGTTACCATCAATGAAATGGACACTCTACTGATTTGTGATGCCTGTGAAAAAGCATAC 1278
Query 1021 CACTTGAAATGTCTACAAGCTCACAATATAAAAGGTGTTCCGAAATCTGAATGGCATTGC 1080
|||||||||||||| |||| ||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1279 CACTTGAAATGTCTGCAAGGAAACAATATGAAAGGGGTTCCAAAATCTGAATGGCATTGC 1338
Query 1081 TCAAGATGTGTGCA-GTTATACAATGGCAAGTCTTTTCCTCCTAAATACGGCCGTG---- 1135
|||||||||||||| | || |||||| ||| | |||||||||| ||| || ||||
Sbjct 1339 TCAAGATGTGTGCAAGC-ATTCAATGGGAAGCCATTTCCTCCTACATATGGGCGTGCGAC 1397
Query 1136 TCATGA-GAAGCGCC-ACTACAGCAAAAATGTCTTCTAGTACAGCCGAAGTTC 1186
|| || | |||| | ||||||||||||||| ||| ||| |||||| |||||
Sbjct 1398 TCGTGCCGTAGCGACGACTACAGCAAAAATGCCTTTTAGGGCAGCCGGAGTTC 1450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103965328695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5