BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474196
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50640.1 | Symbols: ERF3, ATERF3 | ethylene responsive eleme... 1670 0.0
AT3G20310.1 | Symbols: ATERF-7, ATERF7, ERF7 | ethylene respons... 272 5e-72
> AT1G50640.1 | Symbols: ERF3, ATERF3 | ethylene responsive element
binding factor 3 | chr1:18757148-18758433 REVERSE LENGTH=1286
Length=1286
Score = 1670 bits (904), Expect = 0.0
Identities = 1171/1286 (91%), Gaps = 74/1286 (6%)
Strand=Plus/Plus
Query 1 GCTTTTTGTGTTGAAGAGAGAGTttcctatcttccccattcctcccaccatctccct-a- 58
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1 GCTTTTTGTGTTGAAGAGAGAGTTTCCTATCTTCTCCATTCCTCCCACCATCTCCCTCAT 60
Query 59 ----atc-t--tct-tc-ttct-tcctt-t---c--tctc-------tctttctccatta 95
||| | ||| || |||| || || | | |||| |||||||||||||
Sbjct 61 CTTCATCTTCCTCTCTCTTTCTCTCTTTCTCAACAATCTCTATTAGATCTTTCTCCATTA 120
Query 96 ccattacttctggctttctcttAAATCCACTACCATGAGGAGAGGAAGAGGCTCTTCCGC 155
||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 121 CCATTACCTCTGGCTTTCTCTTAAATCCACCATCATGAGGAGAGGAAGAGGCTCTTCCGC 180
Query 156 CGTCGCCGGACCTACCGCCGTTGCCGCCATCAACGGATCTGTTAAAGAAA-CACGATTCA 214
||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||
Sbjct 181 CGTCGCCGGACCTACCGTCGTTGCCGCCATCAACGGATCTGTAAAAGAAATCA-GATTCA 239
Query 215 GAGGCGTTAGGAAGAGACCTTGGGGACGATTCGCAGCTGAGATCCGTGATCCATGGAAAA 274
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGGCGTAAGGAAGAGACCTTGGGGACGATTCGCAGCTGAGATCCGTGATCCATGGAAAA 299
Query 275 AAGCTCGTGTCTGGTTAGGTACTTTCGATTCCGCCGTCGAAGCTGCTCGCGCTTACGACT 334
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 AAGCTCGTGTTTGGTTAGGTACTTTCGATTCCGCCGAAGAAGCTGCTCGCGCTTACGACT 359
Query 335 CCGCCGCTCGTAACCTCCGTGGTCCAAAAGCCAAAACTAATTTCCCGATCGATTCTTCTT 394
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 360 CCGCCGCTCGTAACCTCCGTGGTCCTAAAGCCAAAACTAATTTCCCCATCGATTCTTCTT 419
Query 395 CTCCTTCTCCTC--AA-CAACGATTTAATCAGATTCAAAATCAAAATCAAAATCAAGTCG 451
||||| |||||| || | |||||||||||||||| |||||||||||||| |||||||
Sbjct 420 CTCCTCCTCCTCCTAATCTCCGATTTAATCAGATTCGTAATCAAAATCAAAACCAAGTCG 479
Query 452 ATCCGTTCATGGACCACCGGTTATACGCCGACCATCAACAACAGTTTCCGATCGTTAACC 511
||||||| |||||||||||||||| | ||||||||||||||||||| ||||| |||||||
Sbjct 480 ATCCGTTTATGGACCACCGGTTATTCACCGACCATCAACAACAGTTCCCGATTGTTAACC 539
Query 512 GGCCGACTAGTAGCAGCATGAGCAGCACCGTTGAATCGTTTAGCGGACCGAGACCTACGA 571
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 540 GGCCTACTAGTAGCAGCATGAGCAGCACCGTTGAATCGTTTAGCGGACCCAGACCTACGA 599
Query 572 CGATGAAACCGGCCACGACGAAGAGATATCCCAGAACTCCACCGGTTGTTCCCGAGGATT 631
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 600 CGATGAAACCGGCCACGACGAAGAGATATCCTAGAACTCCACCGGTTGTTCCGGAGGATT 659
Query 632 GTCACAGCGATTGCGATTCGTCGTCGTCTGTAATCGTCGACGACGACGATATCGCATCGT 691
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 GTCACAGCGATTGCGATTCGTCGTCGTCTGTAATCGACGACGACGACGATATCGCATCGT 719
Query 692 CATCGCGGCGACGGAATCCGCCGTTTCAATTCGATCTAAATTTTCCACCGTTGGAT-GAT 750
| || |||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 720 CTTCACGGCGACGGAATCCGCCGTTTCAATTCGATCTTAATTTTCCACCGTTGGATTG-T 778
Query 751 GTTGACTTGTTCAATGGCTCTGATGATCTTCACTGTACCGATCTACGTCTCTAATGAATT 810
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTTGACTTGTTCAATGGCGCTGATGATCTTCACTGTACCGATCTACGTCTCTAATGAATT 838
Query 811 GGTAAA-TCA----CA--------GATCCGTGATCGATTTGATTTTAATGGAGCA-A-AC 855
|||||| ||| || |||||||||||| |||||||||||| || | | ||
Sbjct 839 GGTAAAATCAAAATCAAAATCACAGATCCGTGATCGGTTTGATTTTAATCGAAAACACAC 898
Query 856 AACAAAAATCCCtttttttttttttttttAAATTTTCTGTTTCGTTGATCTCATATAATT 915
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AACAAAA-TCC-TTTTTTTTTTTTTTTTTAAATTTTCTGTTTCGTTGATCTCATATAATT 956
Query 916 TTTACTATGCGGGagaaatagaaagacaaagaaacgaagaagaagaaga---TGGTGATG 972
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 TTTACTATGCGGGAGAAATAGAAAGACAAAGAAACGAAGAAGAAGAAGAAGATGGTGATG 1016
Query 973 AGCTTGAGAG--CTTGAGCTGGTTCTGTGTTTCTTCTGTGATGATATTGTAAGAGTATTA 1030
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGCTTGAGAGAGCTTGAGCTGGTTCTGTGTTTCTTCTGTGATGATATTGTAAGAGTATTA 1076
Query 1031 TTATTTT--TATTATTTACTACATCTTCAAAATCAAGAAGAGGAAGACCGAACACGATGA 1088
||||||| ||||||| |||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 1077 TTATTTTACTATTATT-ACTAAATCTTCAAAACCAAGAAGAAGAAGACCGAACACGATGA 1135
Query 1089 TCTGTTGTGTCTGTTTGTTTTACTGTAAGAAAAA-GCAGATCTGGGTTTCGTTTTTT-CT 1146
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1136 TCTGTTGTGTCTGTTTGTTTTACTGTAAGAAAAACGCAGATCTGGGTTTCGTTTTTTTCT 1195
Query 1147 TGAGATAGA--A-----------TCTTTGTAACATATACATTTGGAACACTGATGATTCT 1193
||||||||| | |||||||||||||||||||||||||||| ||||||||
Sbjct 1196 TGAGATAGATCAAACAACCCCCATCTTTGTAACATATACATTTGGAACACTCATGATTCT 1255
Query 1194 AAATAAAA--TCTAGAATCttttttt 1217
|||||||| ||||||||||||||||
Sbjct 1256 AAATAAAAAATCTAGAATCTTTTTTT 1281
> AT3G20310.1 | Symbols: ATERF-7, ATERF7, ERF7 | ethylene response
factor 7 | chr3:7084806-7086805 REVERSE LENGTH=2000
Length=2000
Score = 272 bits (147), Expect = 5e-72
Identities = 275/334 (82%), Gaps = 20/334 (6%)
Strand=Plus/Plus
Query 81 tctctttctccattaccattacttctggcttt-c-tcttAAATCCACTACCATGAGGAGA 138
|||| |||| ||| | |||||||||||||||| | |||| || || ||||||||| |
Sbjct 67 TCTC-TTCTTCATCA-CATTACTTCTGGCTTTACATCTTTTTTCTTCT-CCATGAGGAAA 123
Query 139 GGAAGAGGCTCTTCCGCCG-TCG-CCGGACCTACCGCCGTTGCCGCCATCAACGGATCTG 196
|| ||||||||||||| || | | || | ||| | | || ||| | | |||||||
Sbjct 124 GGGAGAGGCTCTTCCGTCGTTGGACCCGCCCT-TC-CAGTAACCG-C--CGGTGGATCTG 178
Query 197 TTAAAGAAACACGA--T-TCAGAGGCGTTAGGAAGAGACCTTGGGGACGATTCGCAGCTG 253
| ||| | | ||| | | |||||||||||||||||||||||||| |||||||||||||
Sbjct 179 -TGAAGGAGC-CGAGGTAT-AGAGGCGTTAGGAAGAGACCTTGGGGTCGATTCGCAGCTG 235
Query 254 AGATCCGTGATCCATGGAAAAAAGCTCGTGTCTGGTTAGGTACTTTCGATTCCGCCGTCG 313
||||||||||||||| |||||| ||||||||||| | |||||||||||||||||||| |
Sbjct 236 AGATCCGTGATCCATTAAAAAAATCTCGTGTCTGGCTCGGTACTTTCGATTCCGCCGTAG 295
Query 314 AAGCTGCTCGCGCTTACGACT-CCGCCGCTCGTAACCTCCGTGGTCCAAAAGCCAAAACT 372
| ||||| ||||||||||| | ||||||| |||||||||||||||||||| ||||| ||
Sbjct 296 ATGCTGCACGCGCTTACGA-TACCGCCGCACGTAACCTCCGTGGTCCAAAGGCCAAGACC 354
Query 373 AATTTCCCGATCGATTCTTCTTCTCCTTCTCCTC 406
|||||||||||||||| |||| || |||||||||
Sbjct 355 AATTTCCCGATCGATTGTTCTCCTTCTTCTCCTC 388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5