BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474199
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50670.1 | Symbols: | OTU-like cysteine protease family pro... 1369 0.0
> AT1G50670.1 | Symbols: | OTU-like cysteine protease family protein
| chr1:18774856-18776959 REVERSE LENGTH=1048
Length=1048
Score = 1369 bits (741), Expect = 0.0
Identities = 826/866 (95%), Gaps = 9/866 (1%)
Strand=Plus/Plus
Query 1 TCTATTCCTTCAAAACCAAGAACCAAACTTTGTTCTATA-T--AAAGttttttttGCTTT 57
|||||||||||||||||||||||| ||||||||| |||| | |||| || ||||||||
Sbjct 88 TCTATTCCTTCAAAACCAAGAACCCAACTTTGTTTTATATTCAAAAG--TTGTTTGCTTT 145
Query 58 CATCGCGTTTGGTGTTCATTTTCATCTGGTTTGAGA-T-T-ATAACATGGATGGAATCAT 114
||||||||||||||||||| |||||||||||||||| | | |||||||||| ||||||||
Sbjct 146 CATCGCGTTTGGTGTTCATCTTCATCTGGTTTGAGATTATAATAACATGGAAGGAATCAT 205
Query 115 TGTGAGAAGAGTTATACCATCTGACAACAGTTGTCTCTTCAATGCAATCGGTTATGTCAT 174
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 206 TGTGAGAAGAGTTATACCATCTGATAACAGTTGTCTCTTCAATGCAATCGGTTATGTCAT 265
Query 175 GGACAAGGATAAAAACAAATCTCCTGAGCTCAGACAGGTGATAGCAGCAGCGGTTGCAAG 234
||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 266 GGACAAGGACAAAAACAAAGCTCCTGAGCTCAGACAGGTGATAGCAGCAGCAGTTGCAAG 325
Query 235 CAACAAGGAGAAATATAATGAAGCATTTCTAGGGAAGCACAATGAAGAATATTGTACTTG 294
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 326 CAACAAGGAGAAATATAATGAAGCATTTCTAGGGAAGCTCAATGAAGAATATTGTGCTTG 385
Query 295 GATTCTCAATCCAGAGAAGTGGGGAGGTGCGATTGAGCTTTCGATATTAGCAGATTATTA 354
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 GATTCTCAATCCAGACAAGTGGGGAGGTGCGATTGAGCTTTCGATATTAGCAGATTATTA 445
Query 355 TGGTCGAGAAATTGCAGCTTACGACATTCAAACTAGTCGATGTGACTTGTATGGACAGAC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TGGTCGAGAAATTGCAGCTTACGACATTCAAACTAGTCGATGTGACTTGTATGGACAGAC 505
Query 415 AAAAAACTACAACGAAAGAGTTATGCTGATCTATGACGGTCTTCATTACGATGCTCTTGC 474
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GAGAAACTACGACGAAAGAGTTATGCTGATCTATGACGGTCTTCATTACGATGCTCTTGC 565
Query 475 TCTGTCTCCATTTGAAGGAGCCGAGGAAGATTTTGATATGACTATATTTCCAGTTGGTAA 534
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 566 TCTGTCTCCATTTGAAGGGGCCGAGGAAGATTTTGATATGACTATATATCCAGTTGGTAA 625
Query 535 AGATAGATCCATCGGGTCAATTGAAGGGCTTGTTTTGAATCTAGTAAAGGACCAACAAAG 594
|||||||||||| || |||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 626 AGATAGATCCATAGGATCAATTGAAGGGCTTGCTTTGAATCTAGTGAAGGACCAACAAAG 685
Query 595 GAAAAGGAGTTACACAGATACTGCAAACTTCACTCTACGTTGCGGTGTTTGCCAAATTGG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 GAAAAGGAGTTACACAGATACTGCAAACTTCACTCTACGTTGCGGTGTTTGCCAAATTGG 745
Query 655 AGTTATTGGACAAAAGGAAGCTGTGGAACATGCTCAAGCAACTGGTCATGTCAACTTTCA 714
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 746 AGTTATTGGACAAAAGGAAGCTGTGGAACATGCTCAAGCAACTGGTCATGTTAATTTTCA 805
Query 715 AGAATACAAATAAGAGAATGATTGATTTGATTCTTTTATACAATTCCAAGAAACAAGAAA 774
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 806 AGAATACAAATAAGAGAATGATTGATTTGATTCTTTTATACAGTTCCAAGAAACAAGAAA 865
Query 775 GTAAATTACGAAAATGATGTGCTTAATTTTAATGTTGTGT-GTCAACTATTCAAGTTCAG 833
||||| |||||||||||||||||||||||||| || ||| |||||| || ||| |||||
Sbjct 866 GTAAACCACGAAAATGATGTGCTTAATTTTAATTTTATGTTGTCAACAATACAAATTCAG 925
Query 834 TCTGTTGTGCAATTATCTTGTGTTGT 859
||||||||||||||||||||||||||
Sbjct 926 TCTGTTGTGCAATTATCTTGTGTTGT 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41895278598
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5