BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474200
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50680.1 | Symbols: | AP2/B3 transcription factor family pr... 1513 0.0
AT1G51120.1 | Symbols: | AP2/B3 transcription factor family pr... 1029 0.0
> AT1G50680.1 | Symbols: | AP2/B3 transcription factor family
protein | chr1:18777601-18778614 REVERSE LENGTH=1014
Length=1014
Score = 1513 bits (819), Expect = 0.0
Identities = 950/1015 (94%), Gaps = 2/1015 (0%)
Strand=Plus/Plus
Query 1 ATGAGACTTAATGACGAACCTGAAAACGCCCTAGTGGTTTCGTCTGCAACAAAGACGGTT 60
||||||||| |||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 1 ATGAGACTTGATGACGAACCAGAAAACGCCCTAGTGGTTTCGTCTTCACCAAAGACGGTT 60
Query 61 GTGGTTTCTGGCAATGTCAAGTACAAAGGGGTGGTTCAGCAACAGAACGGTCATTGGGGG 120
|||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 61 GTGGCTTCTGGCAATGTCAAGTACAAAGGAGTCGTTCAGCAACAGAACGGTCATTGGGGT 120
Query 121 GCTCAGATTTATGCAGACCACAAAAGGATTTGGCTTGGAACTTTCCAATCCGCTGCTGAA 180
|| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 121 GCCCAGATTTACGCAGACCACAAAAGGATTTGGCTTGGAACTTTCAAATCCGCTGATGAA 180
Query 181 GCCGCCACGGCTTACGATAGTGCATCTATCAAACTCCGGAGCTTTGACGCTAACTCGCAC 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GCCGCCACGGCTTACGATAGTGCATCTATCAAACTCCGAAGCTTTGACGCTAACTCGCAC 240
Query 241 AGGAACTTCCCTTGGTCTA-ATATCACAGTCCACGAACCAGACTTTCAAGATTGCTACAC 299
|||||||||||||||||| | ||||| || ||||||||||||||||| ||||||||||
Sbjct 241 CGGAACTTCCCTTGGTCTACA-ATCACTCTCAACGAACCAGACTTTCAAAATTGCTACAC 299
Query 300 AACAGAGACTGTGTTGAACATGATCAGAGACGGTTCTTACCCGCACAAGTTCAGAGACTT 359
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||
Sbjct 300 AACAGAGACTGTGTTGAACATGATCAGAGACGGTTCGTACCAACACAAATTCAGAGATTT 359
Query 360 TCTAAGAGTCAGATCTCAGATTGTTGCGAGTATGAACATCGGGGGAACAAAACAAGTCCG 419
||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 360 TCTCAGAATCAGATCTCAGATTGTTGCGAGTATCAACATCGGGGGACCAAAACAAGCCCG 419
Query 420 AGGAGAAGTAAATCAAGAATCTGACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGA 479
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGAGAAGTGAATCAAGAATCAGACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGA 479
Query 480 ATTGACACCGAGTGATGTAGGAAAACTAAATAGGCTTGTGATACCTAAGAAGTATGCAGT 539
|||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 480 ATTGACACCGAGCGATGTAGGGAAACTAAATAGGCTTGTGATACCTAAAAAGTATGCAGT 539
Query 540 GAAGTATATGCCTTTCATAAGCGATGATCAAAGCGAGAAAGAAGATGGTGAAATAGGAGG 599
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||
Sbjct 540 GAAGTATATGCCTTTCATAAGCGCTGATCAAAGCGAGAAAGAAGAGGGTGAAATAGTAGG 599
Query 600 ATCTGTGGAAGATGTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATCTGTGGAAGATGTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAG 659
Query 660 GTATTGTTACTGGAAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGCTGGAATAGTTTCGT 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 GTATTGTTACTGGAAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATAGTTTCGT 719
Query 720 GAAGGAGAAGAATCTCAAGGAGAAGGATGTTATAGTCTTTTACACTTGTGATGTCCCGAA 779
||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||
Sbjct 720 GAAGGAGAAGAATCTCAAGGAGAAGGATGTTATTGCCTTCTACACTTGCGATGTCCCGAA 779
Query 780 TAATGTCAAGACATTAGAAGGTCAAAGCAAGACCTTCTTGATGATCGATGTTCATTACTT 839
||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 780 CAATGTGAAGACATTAGAAGGTCAAAGAAAGAACTTCTTGATGATCGATGTTCATTGCTT 839
Query 840 TTCAGACAACGGCACCGTGGTCGCTGAGGAAGTAAGCATGACGGTTCATGACAGTTCAGA 899
|||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 840 TTCAGACAACGGTTCCGTGGTAGCTGAGGAAGTAAGTATGACGGTTCATGACAGTTCAGT 899
Query 900 GGAAGGAATGAAAACAGAAAACTTCGTTAGCTCGAAGTCAAAAGATAAAGAAACCAAAAC 959
| ||| || ||||||||||||||| |||||||| | || | ||||||||||||||||| |
Sbjct 900 GCAAGTAAAGAAAACAGAAAACTTGGTTAGCTCCATGTTAGAAGATAAAGAAACCAAATC 959
Query 960 AGAGGAAAACAAAGGAGGGTTTATGCTCTTTGGTGTAAGGATCCAATGTCCTTAG 1014
|||||| |||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 960 AGAGGAGAACAAAGGAGGGTTTATGCTGTTTGGTGTAAGGATCGAATGTCCTTAG 1014
> AT1G51120.1 | Symbols: | AP2/B3 transcription factor family
protein | chr1:18938091-18939149 FORWARD LENGTH=1059
Length=1059
Score = 1029 bits (557), Expect = 0.0
Identities = 816/937 (87%), Gaps = 34/937 (4%)
Strand=Plus/Plus
Query 84 CAAAGGGGTGGTTCAGCAACAGAACGGTCATTGGGGGGCTCAGATTTATGCAGACCA-CA 142
|||||| || |||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 141 CAAAGGAGTTGTTCAGCAACAGAACGGTCATTGGGGTGCTCAGATTTACGCAGACCATC- 199
Query 143 AAAGGATTTGGCTTGGAACTTTCCAATCCGCTGC-TGAAGCCGCCACGGCTTACGATAGT 201
|||||||||||||||||||||| |||||||| | ||||||||| | |||||||||||
Sbjct 200 GAAGGATTTGGCTTGGAACTTTCAAATCCGCT-CATGAAGCCGCTGCTGCTTACGATAGC 258
Query 202 GCATCTATCAAACTCCGGAGCTTTGACGCTAACTCGCACAGGAACTTCCCTTGGTCTAAT 261
||||| || || || || |||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 259 GCATCGATTAAGCTTCGAAGCTTTGATGCTAACTCGCACCGGAACTTCCCTTGGTCTGAT 318
Query 262 ATCACAGTCCACGAACCAGACTTTCAAGATTGCTACACAACAG-AGACTGTGTTGAACAT 320
| || |||| ||||| ||||||||||| |||||||| |||| || |||||||||||||
Sbjct 319 TTTACCCTCCATGAACCGGACTTTCAAGAGTGCTACACGACAGAAG-CTGTGTTGAACAT 377
Query 321 GATCAGAGACGGTTCTTACCCGCACAAGTTCAGAGACTTTCTAAGAGTCAGATCTCAGAT 380
|||||||||||||||||| | |||||||||||||| ||||| ||| || | ||||||||
Sbjct 378 GATCAGAGACGGTTCTTATCAACACAAGTTCAGAGATTTTCTCAGAATCCGGTCTCAGAT 437
Query 381 TGTTGCGAGTATGAACATCGGGGGAACAAAACAAGTCCGAGGAGAAGTA-AA-----TCA 434
|||||||| ||| ||||||| |||| ||||||||||| ||||| || | || |||
Sbjct 438 TGTTGCGAATATCAACATCGTGGGATCAAAACAAGTCTTAGGAGGAGGAGAAGGTGGTCA 497
Query 435 AGAATCTG-ACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGAATTGACACCGAGTG 493
|||||| | |||||||||| || ||||| |||||||||||||| ||| |||||||||| |
Sbjct 498 AGAATC-GAACAAGTGTTTCTCGTGCACGCAGCTTTTTCAGAAAGAACTGACACCGAGCG 556
Query 494 ATGTAGGAAAACTAAATAGGCTTGTGATACCTAAGAAGTATGCAGTGAAGTATATGCCTT 553
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 ATGTAGGGAAACTGAATAGGCTTGTGATACCTAAGAAGTATGCAGTGAAGTATATGCCTT 616
Query 554 TCATAAGCGATGATCAAAGCGAGAAAGAAGATG-GTGAAATAGGAGGATCTGTGGAAGAT 612
|||||||||||||||||||||||||||| || | ||||| |||| | | |||||
Sbjct 617 TCATAAGCGATGATCAAAGCGAGAAAGA-GACGAGTGAA---GGAGTA---G---AAGAT 666
Query 613 GTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTACTGG 672
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTGGAGGTTGTCTTTTACGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTACTGG 726
Query 673 AAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGCTGGAATAGTTTCGTGAAGGAGAAGAAT 732
| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 727 AGAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATGGTTTCGTGAAGGAGAAGAAT 786
Query 733 CTCAAGGAGAAGGATGTTATAGTCTTTTACACTTGTGATGTCCCGAATAATGTCAAGACA 792
||||||||||| ||| |||| |||||||||||||| |||||||| || ||||| ||||||
Sbjct 787 CTCAAGGAGAAAGATATTATTGTCTTTTACACTTGCGATGTCCCCAACAATGTGAAGACA 846
Query 793 TTAGAAGGTCAAAGCAAGACCTTCTTGATGATCGATGTTCATTACTTTTCAGACAACGGC 852
|||||||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||||
Sbjct 847 TTAGAAGGCCAAAGCAAGACCTTCTTGATGATTGATGTTCATCACTTTTCAGGCAACGGT 906
Query 853 ACCGTGGT-CGCTGAGGAAGTAAGCATGACGGTTCATGACAGTTCAGAGGAAG-GAATGA 910
|||||| | | |||||||||| || |||||||||||| | ||| || |||| || |||
Sbjct 907 TTCGTGGTTCCC-GAGGAAGTAAACAAGACGGTTCATGAGATTTCTGATGAAGAGA-TGA 964
Query 911 AAACAGAAAACTTCGTTAGCTCGAAG-TCAAAAGATAAAGAAACCAAAACAGAGGAAAAC 969
||||||||| | || ||| ||||||| | | |||| | ||||||||| ||||||| ||
Sbjct 965 AAACAGAAACCCTCTTTACCTCGAAGGT-AGAAGA-A--GAAACCAAATCAGAGGAGAAG 1020
Query 970 AAAGGAGGGTTTATGCTCTTTGGTGTAAGGATCCAAT 1006
||||||||||||||||| |||||||| ||||||||||
Sbjct 1021 AAAGGAGGGTTTATGCTGTTTGGTGTTAGGATCCAAT 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5