BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474200 Length=1014 Score E Sequences producing significant alignments: (Bits) Value AT1G50680.1 | Symbols: | AP2/B3 transcription factor family pr... 1513 0.0 AT1G51120.1 | Symbols: | AP2/B3 transcription factor family pr... 1029 0.0 > AT1G50680.1 | Symbols: | AP2/B3 transcription factor family protein | chr1:18777601-18778614 REVERSE LENGTH=1014 Length=1014 Score = 1513 bits (819), Expect = 0.0 Identities = 950/1015 (94%), Gaps = 2/1015 (0%) Strand=Plus/Plus Query 1 ATGAGACTTAATGACGAACCTGAAAACGCCCTAGTGGTTTCGTCTGCAACAAAGACGGTT 60 ||||||||| |||||||||| |||||||||||||||||||||||| || ||||||||||| Sbjct 1 ATGAGACTTGATGACGAACCAGAAAACGCCCTAGTGGTTTCGTCTTCACCAAAGACGGTT 60 Query 61 GTGGTTTCTGGCAATGTCAAGTACAAAGGGGTGGTTCAGCAACAGAACGGTCATTGGGGG 120 |||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 61 GTGGCTTCTGGCAATGTCAAGTACAAAGGAGTCGTTCAGCAACAGAACGGTCATTGGGGT 120 Query 121 GCTCAGATTTATGCAGACCACAAAAGGATTTGGCTTGGAACTTTCCAATCCGCTGCTGAA 180 || |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 121 GCCCAGATTTACGCAGACCACAAAAGGATTTGGCTTGGAACTTTCAAATCCGCTGATGAA 180 Query 181 GCCGCCACGGCTTACGATAGTGCATCTATCAAACTCCGGAGCTTTGACGCTAACTCGCAC 240 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 GCCGCCACGGCTTACGATAGTGCATCTATCAAACTCCGAAGCTTTGACGCTAACTCGCAC 240 Query 241 AGGAACTTCCCTTGGTCTA-ATATCACAGTCCACGAACCAGACTTTCAAGATTGCTACAC 299 |||||||||||||||||| | ||||| || ||||||||||||||||| |||||||||| Sbjct 241 CGGAACTTCCCTTGGTCTACA-ATCACTCTCAACGAACCAGACTTTCAAAATTGCTACAC 299 Query 300 AACAGAGACTGTGTTGAACATGATCAGAGACGGTTCTTACCCGCACAAGTTCAGAGACTT 359 |||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| || Sbjct 300 AACAGAGACTGTGTTGAACATGATCAGAGACGGTTCGTACCAACACAAATTCAGAGATTT 359 Query 360 TCTAAGAGTCAGATCTCAGATTGTTGCGAGTATGAACATCGGGGGAACAAAACAAGTCCG 419 ||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||||| ||| Sbjct 360 TCTCAGAATCAGATCTCAGATTGTTGCGAGTATCAACATCGGGGGACCAAAACAAGCCCG 419 Query 420 AGGAGAAGTAAATCAAGAATCTGACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGA 479 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 420 AGGAGAAGTGAATCAAGAATCAGACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGA 479 Query 480 ATTGACACCGAGTGATGTAGGAAAACTAAATAGGCTTGTGATACCTAAGAAGTATGCAGT 539 |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 480 ATTGACACCGAGCGATGTAGGGAAACTAAATAGGCTTGTGATACCTAAAAAGTATGCAGT 539 Query 540 GAAGTATATGCCTTTCATAAGCGATGATCAAAGCGAGAAAGAAGATGGTGAAATAGGAGG 599 ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| Sbjct 540 GAAGTATATGCCTTTCATAAGCGCTGATCAAAGCGAGAAAGAAGAGGGTGAAATAGTAGG 599 Query 600 ATCTGTGGAAGATGTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAG 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ATCTGTGGAAGATGTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAG 659 Query 660 GTATTGTTACTGGAAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGCTGGAATAGTTTCGT 719 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 660 GTATTGTTACTGGAAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATAGTTTCGT 719 Query 720 GAAGGAGAAGAATCTCAAGGAGAAGGATGTTATAGTCTTTTACACTTGTGATGTCCCGAA 779 ||||||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||| Sbjct 720 GAAGGAGAAGAATCTCAAGGAGAAGGATGTTATTGCCTTCTACACTTGCGATGTCCCGAA 779 Query 780 TAATGTCAAGACATTAGAAGGTCAAAGCAAGACCTTCTTGATGATCGATGTTCATTACTT 839 ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| ||| Sbjct 780 CAATGTGAAGACATTAGAAGGTCAAAGAAAGAACTTCTTGATGATCGATGTTCATTGCTT 839 Query 840 TTCAGACAACGGCACCGTGGTCGCTGAGGAAGTAAGCATGACGGTTCATGACAGTTCAGA 899 |||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 840 TTCAGACAACGGTTCCGTGGTAGCTGAGGAAGTAAGTATGACGGTTCATGACAGTTCAGT 899 Query 900 GGAAGGAATGAAAACAGAAAACTTCGTTAGCTCGAAGTCAAAAGATAAAGAAACCAAAAC 959 | ||| || ||||||||||||||| |||||||| | || | ||||||||||||||||| | Sbjct 900 GCAAGTAAAGAAAACAGAAAACTTGGTTAGCTCCATGTTAGAAGATAAAGAAACCAAATC 959 Query 960 AGAGGAAAACAAAGGAGGGTTTATGCTCTTTGGTGTAAGGATCCAATGTCCTTAG 1014 |||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 960 AGAGGAGAACAAAGGAGGGTTTATGCTGTTTGGTGTAAGGATCGAATGTCCTTAG 1014 > AT1G51120.1 | Symbols: | AP2/B3 transcription factor family protein | chr1:18938091-18939149 FORWARD LENGTH=1059 Length=1059 Score = 1029 bits (557), Expect = 0.0 Identities = 816/937 (87%), Gaps = 34/937 (4%) Strand=Plus/Plus Query 84 CAAAGGGGTGGTTCAGCAACAGAACGGTCATTGGGGGGCTCAGATTTATGCAGACCA-CA 142 |||||| || |||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 141 CAAAGGAGTTGTTCAGCAACAGAACGGTCATTGGGGTGCTCAGATTTACGCAGACCATC- 199 Query 143 AAAGGATTTGGCTTGGAACTTTCCAATCCGCTGC-TGAAGCCGCCACGGCTTACGATAGT 201 |||||||||||||||||||||| |||||||| | ||||||||| | ||||||||||| Sbjct 200 GAAGGATTTGGCTTGGAACTTTCAAATCCGCT-CATGAAGCCGCTGCTGCTTACGATAGC 258 Query 202 GCATCTATCAAACTCCGGAGCTTTGACGCTAACTCGCACAGGAACTTCCCTTGGTCTAAT 261 ||||| || || || || |||||||| |||||||||||| ||||||||||||||||| || Sbjct 259 GCATCGATTAAGCTTCGAAGCTTTGATGCTAACTCGCACCGGAACTTCCCTTGGTCTGAT 318 Query 262 ATCACAGTCCACGAACCAGACTTTCAAGATTGCTACACAACAG-AGACTGTGTTGAACAT 320 | || |||| ||||| ||||||||||| |||||||| |||| || ||||||||||||| Sbjct 319 TTTACCCTCCATGAACCGGACTTTCAAGAGTGCTACACGACAGAAG-CTGTGTTGAACAT 377 Query 321 GATCAGAGACGGTTCTTACCCGCACAAGTTCAGAGACTTTCTAAGAGTCAGATCTCAGAT 380 |||||||||||||||||| | |||||||||||||| ||||| ||| || | |||||||| Sbjct 378 GATCAGAGACGGTTCTTATCAACACAAGTTCAGAGATTTTCTCAGAATCCGGTCTCAGAT 437 Query 381 TGTTGCGAGTATGAACATCGGGGGAACAAAACAAGTCCGAGGAGAAGTA-AA-----TCA 434 |||||||| ||| ||||||| |||| ||||||||||| ||||| || | || ||| Sbjct 438 TGTTGCGAATATCAACATCGTGGGATCAAAACAAGTCTTAGGAGGAGGAGAAGGTGGTCA 497 Query 435 AGAATCTG-ACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGAATTGACACCGAGTG 493 |||||| | |||||||||| || ||||| |||||||||||||| ||| |||||||||| | Sbjct 498 AGAATC-GAACAAGTGTTTCTCGTGCACGCAGCTTTTTCAGAAAGAACTGACACCGAGCG 556 Query 494 ATGTAGGAAAACTAAATAGGCTTGTGATACCTAAGAAGTATGCAGTGAAGTATATGCCTT 553 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 557 ATGTAGGGAAACTGAATAGGCTTGTGATACCTAAGAAGTATGCAGTGAAGTATATGCCTT 616 Query 554 TCATAAGCGATGATCAAAGCGAGAAAGAAGATG-GTGAAATAGGAGGATCTGTGGAAGAT 612 |||||||||||||||||||||||||||| || | ||||| |||| | | ||||| Sbjct 617 TCATAAGCGATGATCAAAGCGAGAAAGA-GACGAGTGAA---GGAGTA---G---AAGAT 666 Query 613 GTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTACTGG 672 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 667 GTGGAGGTTGTCTTTTACGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTACTGG 726 Query 673 AAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGCTGGAATAGTTTCGTGAAGGAGAAGAAT 732 | |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 727 AGAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATGGTTTCGTGAAGGAGAAGAAT 786 Query 733 CTCAAGGAGAAGGATGTTATAGTCTTTTACACTTGTGATGTCCCGAATAATGTCAAGACA 792 ||||||||||| ||| |||| |||||||||||||| |||||||| || ||||| |||||| Sbjct 787 CTCAAGGAGAAAGATATTATTGTCTTTTACACTTGCGATGTCCCCAACAATGTGAAGACA 846 Query 793 TTAGAAGGTCAAAGCAAGACCTTCTTGATGATCGATGTTCATTACTTTTCAGACAACGGC 852 |||||||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||| Sbjct 847 TTAGAAGGCCAAAGCAAGACCTTCTTGATGATTGATGTTCATCACTTTTCAGGCAACGGT 906 Query 853 ACCGTGGT-CGCTGAGGAAGTAAGCATGACGGTTCATGACAGTTCAGAGGAAG-GAATGA 910 |||||| | | |||||||||| || |||||||||||| | ||| || |||| || ||| Sbjct 907 TTCGTGGTTCCC-GAGGAAGTAAACAAGACGGTTCATGAGATTTCTGATGAAGAGA-TGA 964 Query 911 AAACAGAAAACTTCGTTAGCTCGAAG-TCAAAAGATAAAGAAACCAAAACAGAGGAAAAC 969 ||||||||| | || ||| ||||||| | | |||| | ||||||||| ||||||| || Sbjct 965 AAACAGAAACCCTCTTTACCTCGAAGGT-AGAAGA-A--GAAACCAAATCAGAGGAGAAG 1020 Query 970 AAAGGAGGGTTTATGCTCTTTGGTGTAAGGATCCAAT 1006 ||||||||||||||||| |||||||| |||||||||| Sbjct 1021 AAAGGAGGGTTTATGCTGTTTGGTGTTAGGATCCAAT 1057 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49681571383 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5