BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474203
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50710.1 | Symbols: | unknown protein; Has 109 Blast hits t... 2342 0.0
> AT1G50710.1 | Symbols: | unknown protein; Has 109 Blast hits
to 109 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa
- 61; Fungi - 8; Plants - 36; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr1:18784509-18787802 REVERSE
LENGTH=1669
Length=1669
Score = 2342 bits (1268), Expect = 0.0
Identities = 1379/1431 (96%), Gaps = 13/1431 (1%)
Strand=Plus/Plus
Query 1 GGTAGATCGAAGCAGATCTCTCGCCGG-AAACGTCACATTGAGGTATCTATCGATCGCCA 59
|||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct 129 GGTAGATCGAAGCAGATCTCTCGCTGGAAAACGTCACATTGAGGTATCTATCG-CCGCCA 187
Query 60 ATGGTGAAGGCACTTCAAGGCACGGCTCAGAATCTGCCGGCGGATGTCAACCAATTGATC 119
|||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 188 ATGGTGAAGGCACTGCAAGGCGCGGCTCAGAATCTACCGGCGGATGTCAACCAATTGATC 247
Query 120 GATCAGTTAGAGCGTCACTGTTTGGCTCCCGATGGATCTCTTGTTACCAAATCTGCCTAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 248 GATCAGTTAGAGCGTCACTGTTTGGCTCCCGATGGATCTCTTGTTACCAAATCTGTCTAC 307
Query 180 TCCGATCTCCAACTCGCGAGAGAGGAGATGTCTCGGGAGAGACTTCGGTATTTGGAAGCT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TCCGATCTCCAACTCGCGAGAGAGGAGATGTCTCGGGAGAGACTTCGGTATTTGGAAGCT 367
Query 240 ATGGCTATTTATTGTGAAGCTGTAGCTATGGTAGAAGAATATCAGCAAGCTATTTCAGTG 299
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 368 ATGGCTATTTATTGTGAAGCTGTAGCTATGGTTGAAGAATATCAGCAAGCTATTTCAGTA 427
Query 300 GCTAACCATGGTGGAATTCGGGATGTTCAGGGTCTATACCCTCAACTTGGCTTGAAGAAT 359
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 428 GCTAACCATGGGGGAATTCGTGATGTTCAAGGTCTATACCCTCAACTTGGCTTGAAGAAT 487
Query 360 TCTCCTCAGGTTTATGAGACTCTAGAGCATAGATTGGTGGTTGCTGAGGCGGCTCAGAAA 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 488 TCTCCTCAGGTTTATGAGACTCTAGAGCATAGGTTGGTGGTTGCTGAGGCGGCTCAGAAA 547
Query 420 CTGAGGCTGCCTCTAATTTCAGATGATGGTGAAATTCATGAGGAAGAAATTGAAAAGTGG 479
|||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 548 CTGAGGCTACCTCTTATTTCAGATGGTGGTGAAATTCATGAGGAAGAGATTGAAAAGTGG 607
Query 480 AGTATA-TTATCAAGAAGCTCTCTTGATAGTGCAAGCACGAGTTTTACGATTAGCTCCAC 538
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 AGTATACTT-TCAAGAAGCTCTCTTGATAGTGCAAGCACGAGTTTTACGATTAGCTCCAC 666
Query 539 TTCTAACTCTGTGAACTATGCGAATAGCTCTGCAAATAGTGTTGCTGGTGGGACTAGTCT 598
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 667 TTCTAACTCCGTGAACTATGCGAATAGCTCTGCAAATAGTGTTGCTGGTGGGATTAGTCT 726
Query 599 TAGTGCTGTTGATACTGACGTAGTTGGTGGTGTGCCGAATCGATTTCTTGGAATAACACC 658
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 727 TAGTGCTGTTGATACTGACGTAGTAGGTGGTGTTCCGAATCGATTTCTTGGAATAACACC 786
Query 659 TGCTTACTTATCCTATGTTCAGCTCCAAAATACTATTTCCATGGACATGGCTGACTACCA 718
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 787 TGCTTACTTATCCTATGTTCAGCTTCAAAATACTATTTCCATGGACATGGCTGACTACCA 846
Query 719 AATGTTTCTTGCACGTGAGATAGAAGGTCGATTGAAGGACAAATGTGATAAGTTGGCTGA 778
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 847 AATGTTTCTTGCCCGTGAGATAGAAGGTCGATTGAAGGAAAAATGTGATAAGTTGGCTGA 906
Query 779 TGCCATTGTTGACGACACTGATTCATCCACAGGAAATCGAAATTCAAGTGCTAGGCTCCC 838
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 907 TGCCATTGTTGATGACACTGATTCGTCCACAGGAAATCGAAATTCAAGTGCTAGGCTCCC 966
Query 839 AGAAAGGGTTAAGTTTATAATTGAGGAGATTGAAAGAGATGAAGCAGCTCTACGAGAGGA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 AGAAAGGGTTAAGTTTATAATTGAGGAGATTGAAAGAGATGAAGCAGCTCTACGAGAGGA 1026
Query 899 CCTCTACTCGGCTGACAGGAAGTTTGCTGAATATTACAATGTCCTGGAACAAATACTCGG 958
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CCTGTACTCGGCTGACAGGAAGTTTGCTGAATATTACAATGTCCTGGAACAAATACTCGG 1086
Query 959 GGTGCTTATTAAGCTTGTGAAAGATCTAAAGTTAGAACATCAACACAAATATAATGAGAT 1018
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GGTACTTATAAAGCTTGTGAAGGATCTAAAGTTAGAACATCAACACAAATATAATGAGAT 1146
Query 1019 GCAGAAGACTTGGTTGTGTAAAAGGTGTGAGACCATGAATGCAAAATTAAGGGTTCTGGA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1147 GCAGAAGACTTGGTTGTGTAAAAGGTGTGAGACCATGAATGCAAAATTAAGGGTTTTGGA 1206
Query 1079 AAATGTTCTCCTCCTTGAGACATACACCCCTGACTCCATATCAGCTCTGCACAACATCAG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 AAATGTTCTCCTCCTTGAGACATACACCCCTGACTCCATATCAGCTCTGCACAACATCAG 1266
Query 1139 GAATTATCTAGTCGAGGCTACCGAGGAAGCTTCAGCTGCATACAACAAAGCGGTTACACG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1267 GAATTATCTAGTCGAGGCTACCGAGGAAGCTTCAGCTGCATACAACAAAGCGGTTACTCG 1326
Query 1199 GCTTAGAGAATATCAAGGAGTGGATCCACATTTTGATACAATTGCCAGACAGTATCATGA 1258
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 1327 GCTTAGAGAATATCAAGGAGTAGATCCGCATTTTGATACAATTGCCAGACAGTACCATGA 1386
Query 1259 CATTGTAAAGAAACTGGAAAATATGCAGTGGACCATTCATCAAGTAGAAATGGACCTCAA 1318
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1387 CATTGTTAAGAAACTGGAAAATATGCAGTGGACCATTCATCAAGTAGAAATGGACCTTAA 1446
Query 1319 GTCTCATGACTGATCACTAGATTTGTTAACACTTGTGAGTTGTGACATATGTATTAGCAA 1378
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 1447 GTCTCATGACTGATCACTAGATTTGTTAACACTTGTGA-T----A--TATGTATTAGCAA 1499
Query 1379 ATCTGATCCTCGAAGAAAAGATTGAACTGAGa-aaaaaaTCAGTATAATTT 1428
|||| |||||| |||||| |||||||||| || ||||||||||||||||||
Sbjct 1500 ATCTAATCCTCCAAGAAA-GATTGAACTGGGAGAAAAAATCAGTATAATTT 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5