BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474208
Length=3499
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:18... 5437 0.0
AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:71... 2093 0.0
> AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:18839107-18844559
FORWARD LENGTH=3569
Length=3569
Score = 5437 bits (2944), Expect = 0.0
Identities = 3347/3536 (95%), Gaps = 50/3536 (1%)
Strand=Plus/Plus
Query 1 TCTTCTTCTGCTTAAGCTTTCCTTCTCAGGCAGACCCACTTGCTTGAAACAAGCTCGGTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 19 TCTTCTTCTGCTTAAGCTTTCCTTCTCAGGCAGACCCACTTGCTTGAAACTAGCTCGGAA 78
Query 61 CGATAACGACAAAATTCGCCACCATAAACCCTATTTTTAATCTCCGACTCTGTGGACACT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 79 CGATAACGACAAAATTCGCCACCATAAACCCTATTTTTAATCTCCGACTCTGTCGTCACT 138
Query 121 TCTCCTTCAAGCTGGGTAGATTAAGTTCGCTTATGGCCATGGGGGTTTCTCTTACTTCCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 TCTCCTTCAAGCTGGGTAGATTAAGTTCGCTTATGGCCATGGGGGTTTCTCTTACTTCCC 198
Query 181 ACAATAACcctcttcttcgccacttatctccttcctcttcttgggtttctcgttcctcct 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 199 ACAATAACCCTCTTCTTCGCCACTTATCTCCTTCCTCTTCCTGGGTTTCTCGTTCCTCCT 258
Query 241 ctcgcttctcttcttctccactcccttcctttctctttccttgccgtagaacccttcttc 300
||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 259 CTCGCCTCTCTTCTTCTCCACTCCCTTCCTTCCTCTTTCCTTGCCGTCGAACCCTTCTTC 318
Query 301 AAAGGAAATTATCTTCCACAGAGGGAAATGTCGGTTATTCG-ACTACTACAGTTTGTCAG 359
|||||||| || ||||||| || |||||||||||||||| | ||||||||||||||||||
Sbjct 319 AAAGGAAACTAGCTTCCACTGATGGAAATGTCGGTTATT-GTACTACTACAGTTTGTCAG 377
Query 360 GGATTTCAGCATCCGGGTCATCAACGGTCATCTTCTGTTGTGCTTAACGGAGAGTGGGAA 419
|||||||||||| ||| |||||||||||| |||||||||||| |||||||||||||||||
Sbjct 378 GGATTTCAGCATTCGGTTCATCAACGGTCGTCTTCTGTTGTGTTTAACGGAGAGTGGGAA 437
Query 420 CTTCGATCCGAATCCAACAAGGTAAGGATGGTTCCTAAGATAATCAAGG-TGGCAAATCA 478
|||||||| ||||| |||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 438 CTTCGATCGGAATCTAACAAGGTAAGGATGGTTCCTAAGATTATCAAGGTTGG-AAATCA 496
Query 479 GACGGAAGTTGCTGAAACTCATCAAGTTCCTGGAACTGTAAGTGCTTGGAGGGAAGAAGC 538
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 GACGGAGGTAGCCGAAACTCATCAAGTTCCTGGAACTGTAAGTGCTTGGAGGGAAGAAGC 556
Query 539 AAATAAGCTTAGAGAAAGAAATGGTCAGATTGCTAGAAACCTCGATGACAGTGGATATTT 598
|||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||
Sbjct 557 TAATAAGCTTAGAGAAAGAAATGGTCAAATTGCTAGAAACCTTGATGACAATGGTTATTT 616
Query 599 CAATGGCTCTGTCCCAGTTATATCTAGTGCTCCGTCTTATGAAACCTCTCAGAAGATTGA 658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 CAATGGCTCTGTCCCAATTATATCTAGTGCTCCGTCTTATGAAACCTCTCAGAAGATTGA 676
Query 659 TTATGAGTTCAAACCCAGA-GG-----TA---ACACTACTGTTACACTCAATAAGGAATT 709
|||||||||||| |||||| || || |||||||| ||||||||||||||||||
Sbjct 677 TTATGAGTTCAAGCCCAGAGGGACCACTAGGTCCACTACTGCTACACTCAATAAGGAATT 736
Query 710 GATTGGCGTTACCCAATCTGAACCTGTTGTGTCATTGCCAAGCAAGAGTTTAGATGTTGG 769
||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 737 GATTGGCATTACCCAATCTGAACCTGTTGTGTCATTGCCAAGGAAGGGTTTAGATGTTGG 796
Query 770 AGATAATATGGATGTAAATCCTAGTGGAGAAGCAAAACGGAGACCTCTTATAAGCGGGAA 829
|||||||||||||||||||||| ||||| | || || ||||||||||||||||| ||
Sbjct 797 GGATAATATGGATGTAAATCCTAAAGGAGAGGGAATACAGAGACCTCTTATAAGCGATAA 856
Query 830 GTCTTCTGGTACCGCAAACGGCAACAAGAATACAGTTGCCATTTCCAAAGTGGAGAAAAG 889
|||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||
Sbjct 857 GTCTTCTGGTACCGCAAATGGAAACAAGAATACTGTTGCCATTTCCAAAGTGGAGAGAAG 916
Query 890 CACTGAACCTTCCAATGTCCGTGAAAACCTTAGGAAAATATATGACAAGGTTCTCGTTGT 949
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 917 CACTGAACCTTCGAATGTCCGTGAAAACCTTGGGAAAATATATGACAAGGTTCTCATTGT 976
Query 950 TGATAATGTGCAAGCTGCGAAGGATACCGTGGCTAAGCTCATGAATCAGTATAGGAATCA 1009
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 977 TGATAATGTGCAAGCTGCGAAGGATACCGTGGCTAAGCTCGTGAATCAGTTTAGGAATCA 1036
Query 1010 TGTCCATTCTTGTGATACAGAGGTGTCCGGGATTGAGGTGAAGGAAGAAACGCCTGTCGA 1069
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1037 TGTCCATTCCTGTGATACAGAGGTGTCCGGGATTGAGGTTAAGGAAGAAACGCCTGTCGA 1096
Query 1070 CCACGGTGAATTAATATGTTTCAGTATTTACTGTGGGCCAGAAGCAGATTTTGGGTATGG 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1097 CCACGGTGAATTAATATGTTTCAGTATTTACTGTGGGCCAGAAGCAGATTTTGGGAATGG 1156
Query 1130 AAAATCATGCATCTGGGTTGATGTTCTTGGTGAAAATGGCAGGGAGGTGTTGGCCGAGTT 1189
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 AAAATCGTGCATCTGGGTTGATGTTCTTGGTGAAAATGGCAGGGAGGTGTTGGCCGAGTT 1216
Query 1190 TAAACCGTATTTTGAAGACTCGTTCATCAAAAAAGTCTGGCACAACTACAGTTTCGATAG 1249
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1217 TAAACCATATTTTGAAGACTCGTTCATCAGAAAAGTCTGGCACAACTACAGTTTCGATAG 1276
Query 1250 CCACATCATTAGGAACCATGGAATTGAGATTTCTGGTTTTCATGCCGACACTATGCACAT 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 CCACATCATTAGGAACCATGGAATTGAGATTTCTGGTTTTCATGCCGACACTATGCACAT 1336
Query 1310 GGCACGATTATGGGATTCTGCACGACGGATAGAGGGTGGTTATTCGCTTGAAGCGCTTAC 1369
|||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct 1337 GGCACGATTATGGGATTCTGCACGGCGGATAAAAGGTGGTTATTCGCTTGAAGCGCTTAC 1396
Query 1370 AAGTGACCCAAAAGTTCTTGGGGGCACACAGACAAAGGAGGAAGCTGATTTCCTTGGTAA 1429
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1397 AAGTGACCCAAAAGTTCTTGGGGGCACACAGACAAAGGAGGAAGCTGAGTTCCTTGGTAA 1456
Query 1430 AATTTCGATGAAGACTATTTTTGGCAAACGGAAACTGAAAAAAGATGGATCTGAAGGGAA 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 AATTTCGATGAAGACTATTTTTGGCAAACGGAAACTGAAAAAAGATGGATCTGAAGGGAA 1516
Query 1490 AATGGTTGTCATTCCCCCTGTCGAAGAGCTTCAGCGAGAAGATCGAGAGGCTTGGATTTC 1549
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1517 AATCGTTGTCATTCCCCCTGTTGAAGAGCTTCAGCGAGAAGATCGAGAGGCTTGGATTTC 1576
Query 1550 ATATTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAGCATGACAAAGAAACT 1609
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 ATACTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAGCATGACAAAGAAACT 1636
Query 1610 GCAACTGATGGATTGGCGTCTTGATGGAAAGCCAGTTTTAGAAAGGACAATGTTGGATTT 1669
|||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1637 GCAATTGATGGATTGGCATCTTGATGGAAAGCCAGTTTTAGGAAGGACAATGTTGGATTT 1696
Query 1670 TTACCATGAGTTTTGGCGACCCTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGAT 1729
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 TTACCATGAGTTCTGGCGACCCTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGAT 1756
Query 1730 ACTTGTAGATAGAGAGTATCTTGCTGAGATAGAGAAAGTAGCCAAAGCCGAACAACAAGT 1789
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1757 ACTTGTAGATAGAGAGTATCTTGCTGAGATAGAGAAAGTAGCCAAAGCGGAACAACAAGT 1816
Query 1790 TGCTGGTAGTAGGTTTCGTAATTGGGCATCTAAGTATTGCCCTGATGCAAAGTATATGAG 1849
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1817 TGCTGGTAGTAGGTTTCGTAATTGGGCATCTAAGTATTGCCCCGATGCGAAGTATATGAA 1876
Query 1850 TATTGGCAGTGACACACAATTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACAGTGTGAA 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1877 TATTGGCAGTGACACACAATTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACAGTC--A- 1933
Query 1910 TGGCGAGGTGCTTCCAGTTGAAAAGCTCTTCAAAATTCCCAATATTGATAAGGTTATTGA 1969
|| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1934 TGACGAGGTGCTTCCAGTTGAAAAGCTCTTCAAAGTCCCCAATATTGATAAGGTTATTGA 1993
Query 1970 AGTAGGCaaaaaaaCAGCGACGAAGTTTCGAAACATCAAACTGCATAGGATAACTGACAG 2029
|| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1994 AGAAGGCAAAAAAACACCGACGAAGTTTCGAAACATCAAACTGCATAGGATAAGTGATAG 2053
Query 2030 CCCACTGTCAACTGAAAATTTAACTGCCAGTGGTTGGCCGTCTATAAGTGGGGATGTTTT 2089
|||||||||||| |||||||| ||||||||||||||||| ||| || |||||||||||||
Sbjct 2054 CCCACTGTCAACGGAAAATTTTACTGCCAGTGGTTGGCCCTCTGTAGGTGGGGATGTTTT 2113
Query 2090 GAAAGAGTTAGCTGGGAAAGTTTCTGCTGAATACGACTTTATGGAAGATGTCTCAGATAT 2149
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2114 GAAAGAGTTAGCTGGGAAAGTTTCTGCTGAATACGACTTTATGGATGATGTCTCAGATAT 2173
Query 2150 TTCTCTGGAAGAAGTTGCTGAGGATGATGATGCAGATCAAACTTCAAAAACACAAAAGTC 2209
||||||||||||||||| |||||||||||||| ||| || | ||| |||||||||||||
Sbjct 2174 TTCTCTGGAAGAAGTTGTTGAGGATGATGATGTAGA--AA-CATCAGAAACACAAAAGTC 2230
Query 2210 CAAGACAGATGTTCAAACCGACACATCCGCTTATGGAATAGCATATGTTGCCTTCGGAGG 2269
||||||||||| | ||||||||||||| |||||||||| |||||||||||| || |||||
Sbjct 2231 CAAGACAGATGATGAAACCGACACATCTGCTTATGGAACAGCATATGTTGCATTTGGAGG 2290
Query 2270 GGGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGCGTCATTATGTGAAGTTTGCTCAAT 2329
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2291 GGGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGCCTCATTATGTGAAGTTTGCTCTAT 2350
Query 2330 AGA-TGCTTTGATCTCAAATTTTATTCTTCCCTTACAGGGAAGTAATGTATCAGGCAAAG 2388
||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2351 AGACT-CTTTGATCTCAAATTTTATTCTTCCGTTACAGGGAAGTAATGTATCAGGCAAAG 2409
Query 2389 ATGGTCGCGTCCATTGCTCCCTGAATATCAATACAGAAACTGGGCGCTTATCAGCTAGAA 2448
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2410 ATGGTCGCGTCCATTGCTCCCTTAATATCAATACAGAAACTGGGCGCTTATCAGCTAGAA 2469
Query 2449 GGCCAAATTTGCAGAACCAACCTGCTTTGGAGAAGGATCGGTACAAGATTCGTAAGGCCT 2508
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2470 GGCCAAATTTGCAGAACCAACCTGCATTGGAGAAGGATCGGTACAAGATTCGTAAGGCCT 2529
Query 2509 TTGTAGCGTCACCTGGAAATACACTCGTTGTGGCTGATTATGGGCAGTTGGAACTCAGAA 2568
||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2530 TTGTAGCATCGCCTGGAAATACACTTGTTGTGGCTGATTATGGGCAGTTGGAACTTAGAA 2589
Query 2569 TTCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTTTCAAAGCAGGCGGAGATT 2628
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2590 TTCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTTTTAAAGCAGGCGGAGATT 2649
Query 2629 TCCACTCAAGGACAGCCATGAATATGTATCCACATATTCGTGAAGCTGTAGAAAATGGGC 2688
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2650 TCCACTCAAGGACAGCCATGAATATGTATCCACATGTTCGTGAAGCTGTAGAAAATGGGC 2709
Query 2689 AAGTGATCCTCGAATGGCATCCACAACCTGGGGAAGACAAGCCACCCGTGCCGTTGTTAA 2748
|||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 2710 AAGTGATCCTTGAATGGCATCCAGAACCTGGGGAAGACAAGCCACCTGTGCCGTTGTTAA 2769
Query 2749 AGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTTAACTTTTCAATTGCGTATG 2808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2770 AGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTTAACTTTTCAATTGCGTATG 2829
Query 2809 GGAAAACCGCGATCGGGCTTTCTAGAGATTGGAAGGTCTC-AGTTGAAGAGGCTCAGGAC 2867
||||||||||| |||||||||||||||||||||||||||| | | |||| ||||||||
Sbjct 2830 GGAAAACCGCGGTCGGGCTTTCTAGAGATTGGAAGGTCTCCACTA-AAGAAGCTCAGGAA 2888
Query 2868 ACAGTCAAACTCTGGTACAATGACAGGCAAGAAGTAAGGAAATGGCAAGAAAGGCGTAAG 2927
|||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2889 ACAGTCGATCTCTGGTACAATGACAGGCAAGAAGTAAGGAAATGGCAAGAAATGCGTAAG 2948
Query 2928 AAAGAAGCTATAGAAGATGGATATGTACGCACTTTACTAGGAAGGTCTCGTAGATTTCCG 2987
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 2949 AAAGAAGCTATAGAAGATGGGTATGTACTCACTTTACTAGGAAGGTCTCGTAGATTTCCG 3008
Query 2988 AG-GT-ATAAGTCACGTGCGCAGAAGAA-TCATATCCAAAGAGCAGCAATCAACACTCCA 3044
| || | ||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 3009 -GCGTCA-AAGTCACGTGCTCAGA-GAAATCATATCCAAAGAGCAGCAATCAACACTCCA 3065
Query 3045 GTCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTTGGAAATATCGACAAATCAA 3104
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3066 GTCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTTGGAAATATCGATAAATCAA 3125
Query 3105 CAGTTGAAGAAGCTTGGTTGGAGATTGCTTCTACAGATTCATGATGAAGTGATCTTGGAA 3164
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3126 CAGTTGAAGAAGCTTGGTTGGAGATTGCTTCTACAGATTCATGATGAAGTAATCTTGGAA 3185
Query 3165 GGGCCAATTGAATCAGCGGAGATCGCCAAGGACATAGTTGTGGACTGTATGTCTAAACCC 3224
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 3186 GGACCAATTGAATCAGCGGAGATCGCAAAGGACATAGTTGTGGACTGTATGTCTAAGCCC 3245
Query 3225 TTTAACGGAAGGAATATTCTCTCGGTCGATTTATCTGTTGATGCAAAATGTGCTCAGAAC 3284
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 3246 TTTAACGGAAGGAATATTCTCTCAGTCGATTTATCTGTTGATGCAAAATGTGCTCAAAAC 3305
Query 3285 TGGTATGCTGCCAAATAGA-A-G-TT-GA-A--GG----A----A-G-A-G--ATTTTTT 3324
||||||||||||||||||| | | || || | || | | | | | |||||||
Sbjct 3306 TGGTATGCTGCCAAATAGAGAAGCTTAGAGACCGGCCGTAGTTGAAGGAAGCGATTTTTT 3365
Query 3325 GGGTATATTAAGGTTTGGTTTTTGTAAATGTTAGAAAGCCTTGAGAACATTGAGCTGTGT 3384
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 3366 GGGTATATTAAGGTTTGGGTTTTGTAAATGTTAGAAAGCCTTGAGAACGTTGAGCTGTGT 3425
Query 3385 AAATTGTTTTCTCAA-CTCTAATCCTCTAACTTGACGATGTTTGAATGCAAATGTGGTTT 3443
||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 3426 AAATTGTTTTCTCAAACTCTAATCTTCTAACTTGACGATGTTTGAATGCAAAAGTGGTTA 3485
Query 3444 AAGTAACTTAAGAACAATCATGATATTAATGTTGTGGATGGCTTTGTGTAAAATGA 3499
||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct 3486 AAGTAACTTGAGAACAATCATGATATGAATATTGTGGATTGCTTTGTGTAAAATGA 3541
> AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:7168233-7173617
FORWARD LENGTH=3438
Length=3438
Score = 2093 bits (1133), Expect = 0.0
Identities = 2059/2499 (82%), Gaps = 92/2499 (4%)
Strand=Plus/Plus
Query 855 AAGAATACAGTTGCCATTTCCAAAGTGGAGAAAA-GCACTGAACCT-TC-CAATGTCCGT 911
||||| |||| |||||||||||||||| |||| |||| ||||| || ||| ||||||
Sbjct 719 AAGAAAACAGCAACCATTTCCAAAGTGGA-AAAATGCAC-CAACCTATCGCAA-GTCCGT 775
Query 912 GAAAACCTTAGGAAAATATATGACA-AG-GTTC-TCGTTGTTGATAATGTG-CAAGCTGC 967
| |||||| | ||||||||| | | || |||| | ||||||||||||||| | || |||
Sbjct 776 GCAAACCTCAAGAAAATATA-CA-ATAGAGTTCGT-GTTGTTGATAATGTGTCTAG-TGC 831
Query 968 GAAGGATACCGTGGCTAAGCTCATGAATCAGTATAGGAATCATGTCCATTCTTGTGATAC 1027
||||| ||||||||| |||||||||||| |||||||||| ||||||| |||| |||||
Sbjct 832 AAAGGAAACCGTGGCTCTGCTCATGAATCAATATAGGAATCTTGTCCATGCTTGCGATAC 891
Query 1028 AGAGGTGTCCGGGATTGAGGTGAAGGA-AGAAACGCCTGTCGACCACGGTGA-ATTAATA 1085
|||||| ||| ||||||| ||||| || ||||| ||||| ||||| || || | | ||
Sbjct 892 AGAGGTATCCAGGATTGATGTGAA-GACTGAAACACCTGTAGACCATGGGGAGA-TGATT 949
Query 1086 TGTTTCAGTATTTACTGTGGGCCAGAAGCAGATTTTGG-GTATGGAAAATCATGCATCTG 1144
||||||||||| || ||||| |||||||||||||||| | |||| |||||||| |||||
Sbjct 950 TGTTTCAGTATCTATTGTGGATCAGAAGCAGATTTTGGAG-ATGGTAAATCATGTATCTG 1008
Query 1145 GGTTGATGTTCTTGGTGAAAATGGCAGGGAGGTGTTGGCCGAGTTTAAACCGTATTTT-G 1203
||| ||||| ||||| |||||||| ||||| | |||| |||||||| || | |||| |
Sbjct 1009 GGTAGATGTGCTTGGCGAAAATGGAAGGGATATCCTGGCTGAGTTTAAGCCAT-TTTTCG 1067
Query 1204 AAGACTCGTTCATCAAAAAAGTCTGGCACAACTACAG-TTTCGATAGCCACATCATTAGG 1262
||||||| | ||| |||||||| ||||| |||||||| ||| |||| ||||||||| ||
Sbjct 1068 AAGACTCATCCATAAAAAAAGTATGGCATAACTACAGCTTT-GATAACCACATCATCAGA 1126
Query 1263 AACCATGGAATTGAGATTTCTGGTTTTCATGCCGACACTATGCACATGGCACGATTATGG 1322
|| ||||||| || ||||||||||||||| || || ||||||||||||||||| |||
Sbjct 1127 AATTATGGAATCAAGCTTTCTGGTTTTCATGGTGATACAATGCACATGGCACGATTGTGG 1186
Query 1323 GATTC-TGC-ACGACGGATAGAGGGTGGTTATTCGCTTGAAGCGCTTACAAGTGACCCAA 1380
||||| | | | |||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1187 GATTCAT-CTA-GACGGATATCGGGTGGTTATTCGCTTGAAGCACTTACAAGTGACCCAA 1244
Query 1381 AAGTTCTTGGGGGCACACAGACAAAGGAGGAAGCTGATTTCCTTGGTAAAATTTCGATGA 1440
||||||||||||| || |||||||||||||||| || || |||||||||| || ||||
Sbjct 1245 AAGTTCTTGGGGGAACTGAGACAAAGGAGGAAGCAGAATTATTTGGTAAAATATCAATGA 1304
Query 1441 AGACTATTTTTGGCAAACGG-AAACTGAAAAAAGATGGATCTGAAGGGAAAA-TGGTTG- 1497
||| ||||| ||| || || ||| |||||||||||||||| ||| |||||| ||| ||
Sbjct 1305 AGAAGATTTTCGGC-AAGGGAAAATTGAAAAAAGATGGATCAGAA-GGAAAATTGG-TGA 1361
Query 1498 TCATTCCCCCTGTCGAAGAGCTTC-AGCGAGAAGATCGAGAGGCTTGGATTTCATATTCT 1556
||||||| ||||| ||||||| | | | || |||||||| ||||||||||| || ||
Sbjct 1362 TCATTCCTCCTGTTAAAGAGCTACAAATG-GAGGATCGAGAAGCTTGGATTTCGTACTCA 1420
Query 1557 GCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAGCATGACA-AAGAAACTGCAA-C 1614
|| |||||| | |||||||| ||||||||||| |||||||||| | ||| |||||||| |
Sbjct 1421 GCGTTGGATTCAATAAGCACTCTAAAGCTTTATGAGAGCATGA-AGAAGCAACTGCAAGC 1479
Query 1615 TGATGGATTGGCGTCTTGATGGAAAGCCAGTTT-TAGAAAGGACAATGTTGGATTTTTAC 1673
|| | | ||| |||||||||||| | | ||| | |||| || ||||| ||||| |||
Sbjct 1480 -GAAGAAATGGTTTCTTGATGGAAAACTAATTTCAAAAAAGAAC-ATGTTTGATTTCTAC 1537
Query 1674 CATGAGTTTTGGCGACCCTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGATACTT 1733
|| || | ||||| ||| |||||||||||||||| ||||||||| | ||||| || |||
Sbjct 1538 CAAGAATATTGGCAACCTTTTGGTGAACTTCTTGCCAAAATGGAATCGGAAGGAATGCTT 1597
Query 1734 GTAGATAGAGAGTATCTT-GCTG-AGATAGAGAAAGTAGCCAAAGCCGAACAACAAGTTG 1791
|||||||| || ||| || || | |||| |||| ||||||||||| |||||| || |||
Sbjct 1598 GTAGATAGGGATTAT-TTGGC-GCAGATTGAGATTGTAGCCAAAGCAGAACAAGAAATTG 1655
Query 1792 CTG-GTAGTAGGTTTCGTAATTGGGCATCTAAGTATTGCCCTGATGCAAAGTATATGAGT 1850
||| | | ||||| ||||||||||| || ||| |||| || ||||||||| |||||| |
Sbjct 1656 CTGTTTCG-AGGTTCCGTAATTGGGCTTCAAAGCATTGTCCAGATGCAAAGCATATGAAT 1714
Query 1851 ATTGGCAGTGACACACAATTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACAG-TGTGAA 1909
||||||||||||| |||||||| || |||||||||||||||||||| ||||| ||| ||
Sbjct 1715 GTTGGCAGTGACACGCAATTGCGACAACTCTTTTTTGGTGGCATTTCTAACAGTTGT-AA 1773
Query 1910 TGGCGAGG-TGCTTCCAGT-TGAAAAGCTCTTCAAAATTCCCAATATTGATAAGGTTATT 1967
|| |||| | |||||| | |||||| || |||||| |||||||| | |||||||| |||
Sbjct 1774 TGATGAGGAT-CTTCCA-TATGAAAAACTTTTCAAAGTTCCCAATGTGGATAAGGTGATT 1831
Query 1968 GAAGTAGGCaaaaaa-aCAGCGACGAAGTTTCGAAACATCAAACTGCATAGGATAA-CTG 2025
|||| ||| |||||| | ||| || || || || || ||||||||||||||||||| | |
Sbjct 1832 GAAGAAGG-AAAAAAGAGAGCCACAAAATTCCGGAATATCAAACTGCATAGGATAAGC-G 1889
Query 2026 ACAGCCCACTGTCAACTGAAAATTTAACTGCCAGTGGTTGGCCGTCTATAAGTGGGGATG 2085
|||| || || | |||||||| || |||||| || ||||| ||| | ||||| ||
Sbjct 1890 ACAGACCTTTGCCCACTGAAAAGTTCACTGCCTCAGGCTGGCCCTCTGTTAGTGGAGACA 1949
Query 2086 TTTTGAAAGAGTTAGCTGGGAAAGTTTCTGCTGAATACGACTTTATGGAAGATGTCTCAG 2145
||||||| |||||||||||||| ||||| ||||| |||| |||||| | || | ||
Sbjct 1950 CCTTGAAAGCCTTAGCTGGGAAAGTCTCTGCAGAATATGACTATATGGAGGGCGTTTTAG 2009
Query 2146 ATATTTCTCTGGAAG--AA-GTTGCTGAGGATGA-TG-A--T-G----CAGATCAAACTT 2193
||| || ||| |||| || ||| || ||||| || | | | ||||| || ||
Sbjct 2010 ATACTTGTCTAGAAGAAAACATTGGAGATGATGATTGTATTTCGCTACCAGAT-GAAGTT 2068
Query 2194 -CAAAAACACAA-AAGTCCAAGACAGATGTTCAAACCGACACATCCGCTTATGGAATAGC 2251
| |||||||| | || ||| || |||| || | |||||||| |||||||||| |||
Sbjct 2069 GTAGAAACACAACACGT-CAATACCTCTGTTGAATCAGACACATCTGCTTATGGAACAGC 2127
Query 2252 ATATGTTGCCTTCGGAGGGGGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGCGT-CAT 2310
|| || ||| || |||||||||||||| |||||||| || || ||||||||||| | |||
Sbjct 2128 ATTTGATGCATTTGGAGGGGGTGAAAGTGGAAAGGAAGCTTGCCATGCTATTGC-TGCAT 2186
Query 2311 TATGTGAAGTTTGCTCAATAGATGCTTTGATCTCAAATTTTATTCTTCCCTTACAGGGAA 2370
|||||||||||||||| || ||| | || || ||||||||||| ||||| ||||||||||
Sbjct 2187 TATGTGAAGTTTGCTCCATTGATTCCTTAATATCAAATTTTATCCTTCCTTTACAGGGAA 2246
Query 2371 GTAATGTATCAGGCAAAGATGGTCGCGTCCATTGCTCCCTGAATATCAATACAGAAACTG 2430
|||| || ||||| ||||||||||| ||||| ||||||||||||||||| || |||||||
Sbjct 2247 GTAACGTGTCAGGAAAAGATGGTCGTGTCCACTGCTCCCTGAATATCAACACTGAAACTG 2306
Query 2431 GGCGCTTATCAGCTAGAAGGCCAAATTTGCAGAACCAACCTGCTTTGGAGAAGGATCGGT 2490
| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2307 GACGCTTATCGGCTAGAAGGCCAAATTTGCAGAACCAACCTGCATTGGAGAAAGATCGGT 2366
Query 2491 ACAAGATTCGTAAGGCCTTTGTAGCGTCACCTGGAAATACACTCGTTGTGGCTGATTATG 2550
|||| || ||| ||||||| |||| |||||||||||| |||| |||| ||||||||||
Sbjct 2367 ACAAAATCCGTCAGGCCTTCATAGCATCACCTGGAAATTCACTTATTGTTGCTGATTATG 2426
Query 2551 GGCAGTTGGAACTCAGAATTCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTT 2610
| ||| ||||||| || ||||||||||||||| || |||| ||||||||| ||||||||
Sbjct 2427 GACAGCTGGAACTTAGGATTCTGGCACATCTTGCTAGTTGCGAAAGCATGAAGGAAGCTT 2486
Query 2611 TCAAAGCAGGCGGAGATTTCCACTCAAGGACAGCCATGAATATGTATCCACATATTCGTG 2670
||| ||| || ||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2487 TCATAGCTGGTGGAGACTTCCACTCAAGAACAGCCATGAATATGTATCCTCATATTCGTG 2546
Query 2671 AAGCTGTAGAAAATGG-GCAAGTGATCCTCGAATGGCATCCACAACCTGGGGAAGACAAG 2729
||||||| |||||||| | ||||| |||| |||||||||||||||||||| |||| |||
Sbjct 2547 AAGCTGTTGAAAATGGTG-AAGTGCTCCTTGAATGGCATCCACAACCTGGACAAGAGAAG 2605
Query 2730 CCACCCGTGCCGTTGTTAAAGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTT 2789
|| || ||||| ||||| ||||||||||||| ||| |||||||||||||| |||||||||
Sbjct 2606 CCGCCAGTGCCATTGTTGAAGGATGCCTTTGCTTCTGAGAGAAGAAAAGCAAAGATGCTT 2665
Query 2790 AACTTTTCAATTGCGTATGGGAAAACCGCGATCGGGCTTTCTAGAGATTGGAAGGTCTCA 2849
||||| || |||||||||||||| || || || ||||| ||||||||||||||||| |||
Sbjct 2666 AACTTCTCGATTGCGTATGGGAAGACTGCTATTGGGCTGTCTAGAGATTGGAAGGTATCA 2725
Query 2850 -GTTGAAGAGGCTCAGGACACAGTCAAACTCTGGTACAATGACAGGCAAGAAGTAAGGAA 2908
| ||||| ||||| || ||||| || |||||||| |||||||| |||||||| ||||
Sbjct 2726 AGA-GAAGAAGCTCAAGATACAGTTAATCTCTGGTATAATGACAGACAAGAAGTCCGGAA 2784
Query 2909 ATGGCAAGAAAGGCGTAAGAAAGAAGCTATAGAAGATGGATATGTACGCACTTTACTAGG 2968
|||||||||| || ||||||||||||||| || | || ||||||| |||||| | ||
Sbjct 2785 ATGGCAAGAACTACGCAAGAAAGAAGCTATACAAAAAGGGTATGTACTCACTTTGTTGGG 2844
Query 2969 AAGGTCTCGTAGATTTCC-GAGGTATAAGT-CACGTGCGCAGAAGAATCATATCCAAAGA 3026
|||| |||||| ||| || || || || ||||||| || ||||| |||||| | ||
Sbjct 2845 AAGGGCTCGTAAATTCCCTGAA-TACC-GTTCACGTGCCCAAAAGAACCATATCGAGCGA 2902
Query 3027 GCAGCAATCAACACTCCAGTCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTTG 3086
||||||||||||||||| || ||||||||||| ||||||||||| ||||| || ||| ||
Sbjct 2903 GCAGCAATCAACACTCCTGTTCAGGGAAGTGCGGCTGATGTTGCTATGTGCGCTATGCTG 2962
Query 3087 GAAATATCGACA-AATCAACAGTTGAA-GAAGCTTGGTTGGAGATTGCTTCTACA-GATT 3143
|| ||||| | | ||||||| | | || || ||||||||||| |||||||||||| | ||
Sbjct 2963 GAGATATCAA-ATAATCAACGGCTAAAAGA-GCTTGGTTGGAAATTGCTTCTACAAG-TT 3019
Query 3144 CATGATGAAGTGATCTTGGAAGGGCCAATTGAATCAGCGGAGATCGCCAAGGACATAGTT 3203
||||||||||| ||||||||||| |||| ||| |||||||||| ||| || |||||||||
Sbjct 3020 CATGATGAAGTAATCTTGGAAGGACCAAGTGAGTCAGCGGAGAACGCTAAAGACATAGTT 3079
Query 3204 GTGGACTGTATGTCTAAACCCTTTAACGG-AAGGAATATTCTCTCGGTCGATTTATCTGT 3262
||| |||| |||||| ||||||| ||||| ||| ||||||||||| ||||| ||||||||
Sbjct 3080 GTGAACTGCATGTCTGAACCCTTCAACGGCAAG-AATATTCTCTCAGTCGACTTATCTGT 3138
Query 3263 TGATGCAAAATGTGCTCAGAACTGGTATGCTGCCAAATA 3301
|||||| || |||||||||||||||||||||| ||||||
Sbjct 3139 TGATGCTAAGTGTGCTCAGAACTGGTATGCTGGCAAATA 3177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 174179626096
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5