BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474209
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50870.1 | Symbols: | F-box and associated interaction doma... 944 0.0
AT5G39540.1 | Symbols: | F-box associated ubiquitination effec... 204 2e-51
AT1G47765.1 | Symbols: | F-box and associated interaction doma... 137 2e-31
> AT1G50870.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:18855147-18856337 FORWARD LENGTH=1191
Length=1191
Score = 944 bits (511), Expect = 0.0
Identities = 608/655 (93%), Gaps = 5/655 (1%)
Strand=Plus/Plus
Query 6 GCAACCAGAAGAAAACACCGAACGTATCCACCGAAAAAGACGAAAAAGACAATCTTCTTC 65
||||| |||||||||||||||||| || ||| || |||||||||||||||||||||||||
Sbjct 6 GCAACGAGAAGAAAACACCGAACGGATTCACAGAGAAAGACGAAAAAGACAATCTTCTTC 65
Query 66 GACACCGAAAACAACAACATTGCTCTTTCCTCTCGATCTAATCTTAGAGATACTCTTAAG 125
|| ||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||
Sbjct 66 GATACCAAAAACAACAACATTGCTCTGTCCTCTTGATCTAATCTTGGAGATACTCTTAAG 125
Query 126 ACTACCTGTTAAATCTGTTTTGAGGTTTCGTTGTGTTTCGAAGCTCTGGTTATCAATCAC 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 126 GCTACCTGTTAAATCTGTTTTGAGGTTTCGTTGTGTTTCGAAGCTCTGGTTATCAACCAC 185
Query 186 CACCGATCCATATTTTACCAACGCATACGGAGCTCGATCCTCAACACGACCAAGTCTTCT 245
|||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||
Sbjct 186 CACCGATCCATATTTTACCAACTCATACGAAGCTCGATCCTCAACACGGCCAAGTCTTCT 245
Query 246 AATGTTCTTCAAAAGCAGGGGCAAGTTGTTTGTTTACACGTTTCCGCACCACAATCAGAA 305
|||||||||||||| || || |||||||||||||| ||||||||| ||||||||||||||
Sbjct 246 AATGTTCTTCAAAAACAAGGACAAGTTGTTTGTTTTCACGTTTCCTCACCACAATCAGAA 305
Query 306 TTCGAACGAGCCTCATTCTTATTCTCAGCATGTGGATAGTTACCATATCAAATACCCTAA 365
||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TTCCAAGGAGACTCATTCTTATTCTCAGCATGTGGATAGTTACCATATCAAATACCCTAA 365
Query 366 ACAATGTTGCTTCCGCTTCACGGAATCAGTCCACGGCTTGATCAGCTTTCGAATATCTAC 425
| | |||||||||| |||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 366 ATATTGTTGCTTCCCCTTCACGGAATCTGTCCACGGGTTAATCAGCTTTCGAATATCTAC 425
Query 426 AAAACCCATAATTTGGAACCCTACCATGAGACAGTTTTTAATCTTACCTAAACCGGAAAA 485
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 426 AAAACCCATAATTTGGAACCCTACCATGAGACAGTTTTTAATCTTGCCTAAACCGGAAAA 485
Query 486 AAGCTGGAAGGGATTATCAGTCCTTTTAGGATACGATCCGGTCGAAGGTAAACACAAACT 545
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 486 AAGCTGGAAGGGATTATCAGTCTTTTTAGGATACGATCCAGTCGAAGGTAAACACAAACT 545
Query 546 AATGTGCAT-ACCTCGTGATAGCACATGCGACGAGTGTAGGGTTTTAACACTGGGATTAG 604
||||||||| | |||||||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct 546 AATGTGCATGAA-TCGTGATAACACAAGCGATGAGTGTAGGGTTTTAACACTGGGATCAG 604
Query 605 CTCAA-AAGTCGTGGAGAAGGATCAAAACTAACCATAAGCATCGTTCTATCTCTT 658
||||| || |||||||||||||||| ||||| |||||||||||||||| |||
Sbjct 605 CTCAAGAAAAA-TGGAGAAGGATCAAAAGTAACCTTAAGCATCGTTCTATC-CTT 657
Score = 477 bits (258), Expect = 1e-133
Identities = 326/357 (91%), Gaps = 11/357 (3%)
Strand=Plus/Plus
Query 755 GGTTAGCATGTGTTAATAATACCATGAAGAACGATGTCAATGGTGGTATTACATTGTGGA 814
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 830 GGTTAGCATGTGTTAATAATACCATG--G-ACGATGTCAATGGTGGTATTACATTGTGGA 886
Query 815 CTTTGGAGAATGCAGAGAAACACATATGGTCATGTAAACTCTTTCTTGCTCCTTTTGCTC 874
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 887 CTTTGGAGGATGCAGAGAAACACATATGGTCATGTAAACTCTTTCTTGCTCCTTTGGCTC 946
Query 875 ATTATGGTCGGAGTTTGATAACTGATTTCAAACTAGATGGTATCACTCATGATGGAGAGT 934
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 947 ATTATGATCGGAGTTTGAAAACTGATTTCAAACTAGATGGTATCACTCATGCTGGAGAGT 1006
Query 935 TTATTTACGTACCAGTACCATCCACGTTTCTCAAATCATTTTATATTTTATATTTTGATC 994
|||||||||||| || ||||||||||||||||| |||||| |||| ||||||||||
Sbjct 1007 TTATTTACGTAC---TA---TCCACGTTTCTCAAATCGTTTTATGTTTTGTATTTTGATC 1060
Query 995 CGAAGAAAAGCAACTTCAGAAAAGTCGAGTTTAGAGGAACTA-CGGACGAAGAATTTAGG 1053
||||||||| || ||||||||||||||| ||||||||||| | || |||||| |||||||
Sbjct 1061 CGAAGAAAAACAGCTTCAGAAAAGTCGAATTTAGAGGAAC-AGCGTACGAAGTATTTAGG 1119
Query 1054 CTCAGTAATGGATTTGGAGACAAAAGACAGAATAGGCTCCATACTTTCTCGCATCAC 1110
|||||| ||||| ||||| |||||| | |||||||||| |||||||||||||||||
Sbjct 1120 CTCAGTCATGGACTTGGAAACAAAAAAGTGAATAGGCTCTATACTTTCTCGCATCAC 1176
> AT5G39540.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr5:15833743-15834420 REVERSE LENGTH=591
Length=591
Score = 204 bits (110), Expect = 2e-51
Identities = 124/130 (95%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 755 GGTTAGCATGTGTTAATAATACCATGAAGAACGATGTCAATGGTGGTATTACATTGTGGA 814
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 113 GGTTAGCATGTGTTACTAATACCATGAAGAACGATGTCAATGGTGGTATTATATTGTGGA 172
Query 815 CTTTGGA-GAATGCAGAGAAACACATATGGTCATGTAAACTCTTTCTTGCTCCTTTTGCT 873
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 CTTTGGATG-ATGCAGAGAAACACATATGGTCATGTAAACTCTTTCTTGCTCCTTTTGCA 231
Query 874 CATTATGGTC 883
||| ||||||
Sbjct 232 CAT-ATGGTC 240
> AT1G47765.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:17574906-17576092 REVERSE LENGTH=1158
Length=1158
Score = 137 bits (74), Expect = 2e-31
Identities = 153/190 (81%), Gaps = 9/190 (5%)
Strand=Plus/Plus
Query 92 TTCCTCTCGATCTAATCTTAGAGATACTCTTAAGACTACCTGTTAAATCTGTTTTGAGGT 151
||||||| ||||||| || |||||||||||||| ||||||| |||||| || |||||
Sbjct 77 TTCCTCTGGATCTAACCTCGGAGATACTCTTAAGGCTACCTGAGAAATCTATTGCGAGGT 136
Query 152 TTCGTTGTGTTTCGAAGCTCTGGTTATCAATCACCACCGATCCATATTTTACCAACGCAT 211
|||||||||| |||||||| ||||||||||||||||||||||||||||| | |||| |
Sbjct 137 TTCGTTGTGTGTCGAAGCTTTGGTTATCAATCACCACCGATCCATATTTCATCAACTTGT 196
Query 212 ACGGAGCTCGATCCTCAACACGACCAAGTCTTCTAATGTT-CTTCA-A-AAGCAGGGGCA 268
|| | |||| ||| | |||| || |||||| || | || ||||| | || | | ||
Sbjct 197 TCGAAACTCGGTCC-C--CACGGCCGAGTCTTTTAGT-TTGCTTCATAGAAA-ATGA-CA 250
Query 269 AGTTGTTTGT 278
||||||||||
Sbjct 251 AGTTGTTTGT 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5