BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474212
Length=1910
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50910.1 | Symbols: | unknown protein; Has 1105 Blast hits ... 2891 0.0
AT1G50900.1 | Symbols: GDC1 | Ankyrin repeat family protein | c... 652 0.0
> AT1G50910.1 | Symbols: | unknown protein; Has 1105 Blast hits
to 802 proteins in 217 species: Archae - 2; Bacteria - 177;
Metazoa - 445; Fungi - 210; Plants - 58; Viruses - 6; Other
Eukaryotes - 207 (source: NCBI BLink). | chr1:18866753-18869933
REVERSE LENGTH=1927
Length=1927
Score = 2891 bits (1565), Expect = 0.0
Identities = 1802/1916 (94%), Gaps = 18/1916 (1%)
Strand=Plus/Plus
Query 1 AGTTGCAGGTCTCTAAAACCCTAACCT-TACAAGAATCAGAGTTCCATTGAAAAATTGTT 59
||||||||||||||||||||||| ||| || ||||||||||||||||||| |||||| |
Sbjct 24 AGTTGCAGGTCTCTAAAACCCTACCCTCTAAAAGAATCAGAGTTCCATTG--AAATTGCT 81
Query 60 TGAATAAAACTCCATGGATGATACACAAGTCAAAGCTCTGGAGGAGAAGCTGAAGAGTCA 119
|||| ||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 82 TGAAGAAAACTCCATGGATGATACACAAGTTAAAGCTCTAGAAGAGAAGCTGAAGAGTCA 141
Query 120 GCTTGGCCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTCTACAAGAATAAGAA 179
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 142 GCTAAGTCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTTTACAAGAATAAGAA 201
Query 180 CCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGGGAATTGAGACT 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 202 CCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGAGAATTGAGACT 261
Query 240 TTTACGAACAGCAAACATGGAGAGTATGTTGAGACCTTGCTTTCATGTTATTTCTGGGAG 299
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 262 TTTACGAACAGCAAACATGGAGGGTATGTTGAGACCTTGCTTTCATGTTATATCTGGGAG 321
Query 300 AATAAGTAAACAGAAGATTCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTGATACTGG 359
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 322 AATAAGTAAACAGAAAATCCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTGATACTGG 381
Query 360 GAAACCAAATATCTTGGAACGACTTCTTGGAGCTCTTCATTTACTCTCACAGATGACTGA 419
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 382 GAAACCAAATATCTTGGAACGGCTTCTTGGAGCTCTTCGTTTACTCTCACAGATGACTGA 441
Query 420 ACCCATCTTGAAGGCAGCTAGTGGGATATCCACTCTACTAGCTCGTTCATTTTTCATAGG 479
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 442 ACCCATCTTAAAGGCAGCTAGTGGGATATCTACTCTACTAGCTCGTTCATTCTTCATAGG 501
Query 480 ATTTTCTGTGACATTTTTGGCCCTGCTTGCACGCCTCCGAGTGTTGATTCAACAAATATT 539
||||||||||||||||||||| ||||||||||| |||||||| ||| | |||||||||||
Sbjct 502 ATTTTCTGTGACATTTTTGGCGCTGCTTGCACGTCTCCGAGTATTGGTCCAACAAATATT 561
Query 540 ACTTGATGCTGTTTCAATTTTCAATTCGGTAACATCTACATCACTGAAGAAACAGTCTGT 599
|||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 562 ACTTGACGCTGTTTCAGTTTTCAATTCGGTGACATCTACATCACTGAAGAAACAGTCTGT 621
Query 600 CAAGATAGCACAGGACGGGGTTGAGGTATTCCGCGAGTTCTATCCAAAGGAAGAAGAGTG 659
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 622 CAAGATAGCACAGGACGGGGTTGAGGTTTTCCGCGAGTTCTATCCAAAGGAAGAAGAGTG 681
Query 660 TATCACCTTATTGGATTGTGTATGGAAGACCGATAAATATGTCTTACT-GAAGACATTGC 718
| |||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 682 TGTCACCTTATTGGATTGTGTATGGAAGACTGATAAATATGTCTTACTCGA-GACATTGC 740
Query 719 AGAACTATGAGAATAGTAAACCTATGGAGGAAAATGTCTCTGAAGATGCTACTACTAGGG 778
|||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||
Sbjct 741 AGAACTCTGAGAATAGTAAACCTATGGAAAAAAATGTCTCAGAAGATGTTACTACTAGGG 800
Query 779 ATTCTTTGGTACAGTATCAAACATCTGTTTCTTCTCTCGGGGAAGATCTCTCTCCTTTGC 838
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 801 ACTCTTTGGTACAGTATCAAACATCTGTTTCTTCTCTCGCGGAAGATCTCTCTCCTTTGC 860
Query 839 TT-GAAGCAGACAGCAGTGGTGTTACTGTGAGAAAAAGTTCGACTCCCATTGCTGAAGCA 897
|| || ||||||| |||||||| |||||||||| |||||||||||||||||| |||||||
Sbjct 861 TTCGA-GCAGACAACAGTGGTGCTACTGTGAGAGAAAGTTCGACTCCCATTGATGAAGCA 919
Query 898 GCTTCGTCCAAGACTAACATTGGGTTGCAACCAGAGGATTCAGAAAAACTAGAAGATGTG 957
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 920 GCTTCGTCCAAGACTAACATTGGGTTGCAACCAGAGGATTCAGAAAACCCAGAAGATGCG 979
Query 958 ACAACTAGGGACTGTTCAGTTCAGTATGAAACGTTTGTTTCTCCTCTAGGAGAAGATCTC 1017
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 980 ACAACTAGGGACTGTTCGGTTCAGTATGAAACGTTTGTTTCTCCTCTTGGAGAAGATCTC 1039
Query 1018 TCTCCTTTGCGTGAAGCCGACAACTGTGGTGTTACTGTGAGAGAGAGTTCTACTCCCATT 1077
|||||||||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||
Sbjct 1040 TCTCCTTTGCTTGAAGCCGACAACAGTGGTGTTACTTTGAGAGAAAGTTCTACTCCCATT 1099
Query 1078 GCCGAAGCAGCTCCTTCCAAGACTAACAATGCATTGCAACCAGAAGATTCAGAAAACCCA 1137
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1100 GCCGAAGCAGCTTCTTCCAAGACTAACAATGCATCGCAACCAGAAGATTCAGAAAACCTA 1159
Query 1138 GAAGATGCTACAACTAGGGATTGTTCAATTCAGTACCAAACGTTTGTTTTTCCTCTCGGA 1197
|||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 1160 GAAGATACTACAACTAAGGATTGTTCAATTCAGTATCAAACGTTTGTTTCTCCTCTTGGA 1219
Query 1198 GAAGATATCACACCTTCTCCTCTGCCTGATGCAGACGAAAACAGATATGTTACTGCTACA 1257
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1220 GAAGATATCACACCTTCTCCTCTGCCTGATGCAGACGAAAACGGATATGATACTGCTACA 1279
Query 1258 GAGTCTTTGACTCCCATTGCTGAAGCAGCCTCTTCCAAGACTAACAATGGATCCCAAACA 1317
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1280 GAGTCTTTGACTCCCATTGCTGAAGCAGCCTCTTCCAAGACTAACGATGAATCCCAAACA 1339
Query 1318 GAAGAT-TCAGAAAAACCAGAAGATGAATCTACAAATCCCGTGAGCCCGGCAAAAATTAA 1376
|||||| | |||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1340 GAAGATATG-GAAAAAGTAGAAGATGAATCTACAAATCCCGTGAGCTCGGCAAAAATTAA 1398
Query 1377 CAGAGACACAGTAAAACCAAGATGCAGAGCAACCAAGGTAGCGTTTCTACCCGTGAAAAG 1436
||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 1399 CAGAGACACAGTAAAACCAAGATTCAGAGCAACCAAGGTAGCGTTTCTACCTGTAAAAAG 1458
Query 1437 ACCTTCATCTGCAATAATGCCTAACACCATagaagaacgcccaaggaagaaacaagaaac 1496
||||||||||||||||| ||| |||||||||||| ||| |||| |||||||||||||||
Sbjct 1459 ACCTTCATCTGCAATAACGCCAAACACCATAGAACAACCCCCATTGAAGAAACAAGAAAC 1518
Query 1497 agtcgagaaagacaaaaaggaagaagaTGGATTTTATAATCTACTCATCCGCGGAACCCA 1556
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1519 TGGCGAGAAAGACAAAAAGGAAGAAGATGGATTTTATAATCTACTCATCCGCGGAACACA 1578
Query 1557 GAAAGACAGTTTGTTCTAGCAAACA-AAACATTTCAAAACCCAAGAACATAACTTGTGTG 1615
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1579 GAAAGACAGTTTGTTCTAGCAAACACAAACATTTCAAAACTCAAGAACATAACTTGTGTT 1638
Query 1616 GTTCCTGTGTATTAATACCAAGACACAAGTTCTTCAAGCCTTTTGAG-CGTTGTAGCCAA 1674
||||||||||||||| |||||| | | || | |||||||||||| || ||||||||
Sbjct 1639 GTTCCTGTGTATTAAAACCAAG-CGGA-GT-C---AAGCCTTTTGAGTCGA-GTAGCCAA 1691
Query 1675 GGATCAAATCACGGATCTCTTCACTGTTGGCTCTGTCAATAGCGGTTCTTCCATCAGCAT 1734
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1692 GGATCAAATCACGGATCTCTTCACTGTTGGCTCTGTCGATAGCGGTTCTTCCATCAGCGT 1751
Query 1735 CCTTGACTGAGTAATCAGCACCAGCTTTGAGCAGCTCCTCGATCTTAGGTCTGTCACCTT 1794
||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1752 CCTTGACCGAATAATCAGCACCGGCTTTGAGAAGCTCCTCGATCTTAGGTCTGTCACCTT 1811
Query 1795 CTGTAGCGGCTAACATCAACAAGATATCGACTGGGTGAATGTTTAGGCTAAGAAGAGCTT 1854
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1812 CTGTAGCGGCTAACATCAACAAGATATCAACTGGGTGAATGTTTAGGTTAAGAAGAGCTT 1871
Query 1855 CCATCTTTGAATAGGTACCTTCTACCGCAAGCATACCCATGTAGTTGAAATACTGC 1910
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1872 CCATCTTTGAATAGGTTCCTTCTACTGCAAGCATACCCATGTAGTTGAAATACTGC 1927
> AT1G50900.1 | Symbols: GDC1 | Ankyrin repeat family protein |
chr1:18866197-18867204 FORWARD LENGTH=793
Length=793
Score = 652 bits (353), Expect = 0.0
Identities = 424/457 (93%), Gaps = 9/457 (2%)
Strand=Plus/Minus
Query 1455 GCCTAACACCATagaagaacgcccaaggaagaaacaagaaacagtcgagaaagacaaaaa 1514
||| |||||||||||| ||| |||| ||||||||||||||| | |||||||||||||||
Sbjct 792 GCCAAACACCATAGAACAACCCCCATTGAAGAAACAAGAAACTGGCGAGAAAGACAAAAA 733
Query 1515 ggaagaagaTGGATTTTATAATCTACTCATCCGCGGAACCCAGAAAGACAGTTTGTTCTA 1574
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 732 GGAAGAAGATGGATTTTATAATCTACTCATCCGCGGAACACAGAAAGACAGTTTGTTCTA 673
Query 1575 GCAAACA-AAACATTTCAAAACCCAAGAACATAACTTGTGTGGTTCCTGTGTATTAATAC 1633
||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 672 GCAAACACAAACATTTCAAAACTCAAGAACATAACTTGTGTTGTTCCTGTGTATTAAAAC 613
Query 1634 CAAGACACAAGTTCTTCAAGCCTTTTGAG-CGTTGTAGCCAAGGATCAAATCACGGATCT 1692
|||| | || |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 612 CAAG-C-GGAG----TCAAGCCTTTTGAGTCG-AGTAGCCAAGGATCAAATCACGGATCT 560
Query 1693 CTTCACTGTTGGCTCTGTCAATAGCGGTTCTTCCATCAGCATCCTTGACTGAGTAATCAG 1752
||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||
Sbjct 559 CTTCACTGTTGGCTCTGTCGATAGCGGTTCTTCCATCAGCGTCCTTGACCGAATAATCAG 500
Query 1753 CACCAGCTTTGAGCAGCTCCTCGATCTTAGGTCTGTCACCTTCTGTAGCGGCTAACATCA 1812
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CACCGGCTTTGAGAAGCTCCTCGATCTTAGGTCTGTCACCTTCTGTAGCGGCTAACATCA 440
Query 1813 ACAAGATATCGACTGGGTGAATGTTTAGGCTAAGAAGAGCTTCCATCTTTGAATAGGTAC 1872
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 439 ACAAGATATCAACTGGGTGAATGTTTAGGTTAAGAAGAGCTTCCATCTTTGAATAGGTTC 380
Query 1873 CTTCTACCGCAAGCATACCCATGTAGTTGAAATACTG 1909
||||||| |||||||||||||||||||||||||||||
Sbjct 379 CTTCTACTGCAAGCATACCCATGTAGTTGAAATACTG 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94577826780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5