BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474213
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50930.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1230 0.0
> AT1G50930.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G20557.1);
Has 215 Blast hits to 213 proteins in 63 species: Archae -
0; Bacteria - 2; Metazoa - 83; Fungi - 10; Plants - 45; Viruses
- 5; Other Eukaryotes - 70 (source: NCBI BLink). | chr1:18876837-18877844
FORWARD LENGTH=790
Length=790
Score = 1230 bits (666), Expect = 0.0
Identities = 748/787 (95%), Gaps = 7/787 (1%)
Strand=Plus/Plus
Query 1 GCCAACAAAAGTCTCAACTTAACA-TACACAttttttttttGCATTCCCCCAAACACTTC 59
|||||||||||||||||||| ||| ||||||| ||| ||||| |||||||||||||||||
Sbjct 1 GCCAACAAAAGTCTCAACTTTACATTACACATATTTCTTTTGAATTCCCCCAAACACTTC 60
Query 60 AATGGAGAACTCCGTAAACAACTGCGTGAGACAGAA-AGTATTCTCCAATCACCAAATCA 118
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 61 AATGGAGAACTCCGTAAACAACTGCGTGAGACA-AAGAGTATTCTCCAATCACCAAATCA 119
Query 119 AAACGATACACGAAGAAGAAGATCAAGAAGAGAGTAGTTGGATAGTCTACTTTGAAGATA 178
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 GAATGATACACGAAGAAGAAGATCATGAAGAGAGTAGTTGGATAGTCTACTTTGAAGATA 179
Query 179 TTGATCATGATGATGAAATGGTAGAAACTGAAGGAGAAATGACTCATTATTACGATAATG 238
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 TTGATCATGATGATGAAATGGTAGAAACTGAAGGAGAAATGACTCATTACTACGATAATG 239
Query 239 ATTCATCGATGATCTCAGACGCTGCATCTCCTGTCCACACCACAAAGATTAATAATGTTG 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 ATTCATCGATGATCTCAGACGCTGCATCTCCTGTCCATACCACAAAGATTAATAATGTTG 299
Query 299 TTCGTCGAAAGGCTAATAACATTAATACAAACCCTAAAAAGAGACGAATCATTCATCAGC 358
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 300 TTCGTCGAAAGGCTAATAACATTAATACAAACCCTAAAAAGCGACGAATCATTCATCAAC 359
Query 359 ACaaagaagaagaagaagac---ctacaaaaaggagaggaagaagaagaagatgaggaag 415
||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 360 ACAAAGAAGAAGAAGAAGAAGAACTACAAAAAGGAGAAGAAGAAGAAGAAGATGAAGAAG 419
Query 416 aTACAGCTTCTTCTCCTTCTAATAAAACCAAGGTTTTTAGTGTCTTAGATGGTGCTAATG 475
| || ||||||||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 420 ACACTGCTTCTTCTCCTTCTAATAAAACCAAGATTTTTAGTGTCTTGGACCATGCTAATG 479
Query 476 ATAATACAAGATATGGAAAATCCATGTACAATGTTACATCCGAGGAAATTGGATGCATAA 535
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 480 ATAATACAAGATATGGAAAAACCATGGACAATGTTACATCCGAGGAAATTGGATGCATAA 539
Query 536 CAGACACAGGATCAAAGATAAAAGAAATTATGAACGAAGAATTCTCTGCAGAATTGAAAA 595
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 540 CAGAAACAGGATCAAAGATAAAAGAAATTATGAATGAAGAATTCTCTGCAGAATTGAAGA 599
Query 596 AGAGAGGACTTTGTGTAGTTCCTTTATCCATGTTATCTAACCTTATTGCTTGATGATTCt 655
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 600 AGAGAGGACTTTGTGTAGTTCCTTTATCCATGTTATCTAACTTTATTGCTTGATGATTCT 659
Query 656 tttattttatttt-taagttttaactgttattattattttttattCTTCTGATTCTTTGA 714
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTTATTTTACTCTCTAAGTTTTAACTGTTATTATTATTTTTTATTCTTCTGATTCTTTGA 719
Query 715 TGTAAAATTGTTACTATTATTGATTGACAAGTAAAATGTATAGAAAATTGAATTCTTATT 774
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 TGTAAAATTGTTACTATGATTGATTGACAAGTAAAATGTATAGAAAATCGAATTCTTATT 779
Query 775 GAAAGTT 781
|| ||||
Sbjct 780 GAGAGTT 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37977015132
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5