BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474214
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50940.1 | Symbols: ETFALPHA | electron transfer flavoprotei... 1960 0.0
> AT1G50940.1 | Symbols: ETFALPHA | electron transfer flavoprotein
alpha | chr1:18877812-18880010 REVERSE LENGTH=1389
Length=1389
Score = 1960 bits (1061), Expect = 0.0
Identities = 1178/1234 (95%), Gaps = 10/1234 (1%)
Strand=Plus/Plus
Query 1 AATCAGAAGAGAAAACGATGACGAGAACTGTTCTACTGAGAGCTCTGACGAAGAACAAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 55 AATCAGAAGAGAAAACGATGACGAGAACTGTTCTACTGAGAGCTCTGACGAAGAATAAGT 114
Query 61 TCGTCGCCTCGAATGCTCCTCGATCTATCTCCATCTCCATCTCCATCACCAATCTCTCTC 120
|||||||||| |||||||||||||||| | | ||||| |||||||||| |||||||
Sbjct 115 TCGTCGCCTCTAATGCTCCTCGATCTA--T--A--TCCATTTCCATCACCAGTCTCTCTA 168
Query 121 GATGCATTAGCACTCTGATTCTAGCAGAACATGAGAGTGGTTCAATCAAACCTCAGACAG 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 169 GATGCATTAGCACTCTGATTCTAGCAGAACATGAGAGTGGTACAATCAAACCTCAGACAG 228
Query 181 TGAGTACAGTAGTTGCAGCTAATTCTTTAGGTGAGAATTCTTCAATTTCTTTGTTATTGG 240
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 229 TGAGTACAGTAGTTGCAGCTAATTCATTAGGTGAGAGCTCTTCAATTTCTTTGTTATTGG 288
Query 241 CTGGTTCTGGTTCTTCTCTTCAAGAAGCTGCTTCTCAAGCTGCCTCTTGTCATCCTTCTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CTGGTTCTGGTTCTTCTCTTCAAGAAGCTGCTTCTCAAGCTGCCTCTTGTCATCCTTCTG 348
Query 301 TTTCAGAGGTACTTGTTGCTGATTCTGATAAATTTGAGTACCCTTTAGCTGAGCCTTGGG 360
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 349 TTTCCGAGGTACTTGTTGCTGATTCTGATAAATTTGAGTACTCTTTAGCTGAGCCTTGGG 408
Query 361 CTAAATTGGTTGACTTTGTTCGTCTACAAGGAGATTACTCTCACATTCTTGCTTCCTCAA 420
|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |
Sbjct 409 CTAAATTGGTTGACTTTGTTCGGCAACAAGGAGATTACTCACACATTCTTGCTTCCTCTA 468
Query 421 GTTCGTTTGGCAAGAATTTATTACCCCGTGTCGCTGCTCTTTTAGATGTTTCTCCTATTA 480
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GTTCATTTGGCAAGAATATATTACCCCGTGTCGCTGCTCTTTTAGATGTTTCTCCTATTA 528
Query 481 CCGATGTTGTCAAAATCTTAGGATCCGATCAGTTTGTCAGGCCTATTTATGCGGGAAACG 540
| ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 529 CTGATGTTGTCAAAATCTTAGGATCTGACCAGTTTATCAGGCCTATTTATGCGGGAAACG 588
Query 541 CTTTGTGTACAGTTCGTTATACTGGGGCGGGTCCTTGTATGTTGACTATTAGATCTACAT 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 589 CTTTGTGTACAGTTCGTTATACTGGTGCGGGTCCTTGTATGTTGACTATTAGATCTACAT 648
Query 601 CTTTTCCTGTCGCCCCAATTACAGCAGACTCCGAGTCAAAGAAAGCTACTATCTCTCAGA 660
||||||||||| |||| ||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 649 CTTTTCCTGTCACCCCGATTACAGCAAACTCAGAGTCAAAGAAAGCTACTGTCTCTCAGA 708
Query 661 TTGATCTCTCAAACTTCAAAGAAGACTCTGTCAGTAAATCTAGATATGTGGGACGTTCAA 720
||||||||||||| || |||| ||||||||||| |||||||||||||||||||||||||
Sbjct 709 TTGATCTCTCAAATTTTGAAGACGACTCTGTCAGCAAATCTAGATATGTGGGACGTTCAA 768
Query 721 CTCAGGATACAGAACGGCCTGATCTTGGAAGTGCTCGCGTTGTGATCACTGGTGGAAGGG 780
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 769 CTCAGGATACAGAACGGCCTGATCTTGGAAGTGCACGTGTTGTGATCACTGGTGGAAGGG 828
Query 781 CGCTAAAGAGTGTTGAGAATTTTAAAATGATCGAAAAGCTTGCAGAAAAACTTGGTGGAG 840
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 CGTTGAAGAGTGTTGAGAATTTTAAAATGATCGAAAAGCTTGCAGAAAAACTTGGTGGAG 888
Query 841 CAGTTGGTGCTACTCGTGCTGCTGTTGATGCTGGATATGTTCCTAATGATCTTCAGGTGG 900
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CAGTGGGCGCTACTCGTGCTGCTGTTGATGCTGGATATGTTCCTAATGATCTTCAGGTGG 948
Query 901 GACAAACAGGTAAAATAGTAGCACCAGAGCTATACATGGCATTTGGTGTTTCAGGAGCCA 960
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GGCAAACAGGTAAAATAGTAGCACCAGAGCTATACATGGCATTTGGTGTTTCAGGAGCCA 1008
Query 961 TTCAACACTTAGCTGGAATTAAGGATTCTAAGGTGATTGTTGCGGTTAATAAAGACGCCG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TTCAACACTTAGCTGGAATTAAGGATTCTAAGGTGATTGTTGCGGTTAATAAAGACGCCG 1068
Query 1021 ATGCACCTATTTTCCAGGTAGCTGATTATGGACTTGTTGGAGATCTTTTCGAAGTGATAC 1080
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1069 ATGCACCTATTTTCCAGGTAGCTGATTATGGACTCGTTGGAGATCTTTTCGAGGTGATAC 1128
Query 1081 CCGAGTTGCTGGAGAAGCTTCCAGAAAAGAAATGAGAAGCCGAGAGACCGAAACTCGTCT 1140
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1129 CGGAGTTGCTGGAGAAGCTTCCAGAAAAGAAATGAGACCCCGAGAGACCGAAACTCGTCT 1188
Query 1141 CTGTTTATCATCTCTTAAGCTCG--GTATTTTCAGGTGCAGACCATAGTAAGTAGTGTAT 1198
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1189 CTGTTTATCATCTCTTAAGCTCTCTGTATTTTGAGGTGCAGACCATAGTAAGTAGTGTAT 1248
Query 1199 ATAGCAAAACTGTAATaaaaaaaaCGGTCTGGAG 1232
|||||||||||||||||||||| ||||||||||
Sbjct 1249 ATAGCAAAACTGTAATAAAAAA--CGGTCTGGAG 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63252686700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5