BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474215
Length=1776
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50950.1 | Symbols: | Thioredoxin protein with domain of un... 2636 0.0
AT3G20560.1 | Symbols: ATPDIL5-3, PDI12, ATPDI12, PDIL5-3 | PDI... 1251 0.0
> AT1G50950.1 | Symbols: | Thioredoxin protein with domain of
unknown function (DUF1692) | chr1:18880320-18884225 FORWARD
LENGTH=1782
Length=1782
Score = 2636 bits (1427), Expect = 0.0
Identities = 1675/1792 (93%), Gaps = 28/1792 (2%)
Strand=Plus/Plus
Query 1 TTTTTGTGAAGAGTTCCAATAGTTAAGGAAAGTGGGATCACGACGGCTTTAAGAACAGAA 60
|||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1 TTTTCGTGTAGAGTTCCCATAGTTAAGCAAAGTGGGATCACGACGGCTTTAAGAACAAAA 60
Query 61 TCCGACGAGATACAGATagagagagagagCTCAATCTCAAGATCTGtttttttttttttt 120
||| | || | | ||||||||| |||||||||| | |||||||||| ||||||
Sbjct 61 TCCTA-GATACAGAGATAGAGAAAGAGAGCTCATTGTCAAGATCTG--------TTTTTT 111
Query 121 ttttCTGTTAGAATCCTTTCTTCTTTGTCACAGCCATGGTTTCAACCACCAAGATCAAGT 180
| || ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 112 TCTT-TGTTAGAATCCTTTCTTCTTTGTTACAGCCATGGTTTCAACCTCCAAGATCAAGT 170
Query 181 CCGTTGATTTCTACAGGAAAATCCCAAGAGATTTGACAGAAGCATCTCTCTCTGGTGCTG 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 171 CCGTTGATTTCTACAGGAAAATCCCAAGAGATTTGACTGAAGCATCTCTCTCTGGTGCTG 230
Query 241 GTTTGTCCATTGTAGCTGCCCTTGCTATGTTGTTTTTGTTTGGAATGGAGCTGAGTAGTT 300
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GATTATCCATTGTAGCTGCCCTTGCTATGTTGTTTTTGTTTGGAATGGAGCTGAGTAGTT 290
Query 301 ATTTGGCAATCAACACTAGCACATCTGTAATAGTTGACAAAAGCTCTGATGGGGACTTCT 360
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 ATTTGGCTATTAACACTAGCACATCTGTAATAGTTGACAAAAGCTCTGATGGGGACTTCT 350
Query 361 TAGACATTGATTTCAACATCAGCTTTCCTGCCCTCTCATGTGAATTTGCATCAGTTGATG 420
|| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 351 TAAACATTGATTTTAACATCAGCTTTCCTGCCCTCTCATGTGAATTCGCATCAGTTGACG 410
Query 421 TGAGTGACGTGTTTGGAACTCACAGGTTGAATATAACGAAAACGATTAGAAAAGTTCCAA 480
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 411 TGAGTGACGTGTTTGGAACTCACAGGTTAAATATATCGAAAACGATTAGAAAAGTTCCAA 470
Query 481 TTGATCCGCATTTAAGAGCCACTGGTGCGGAATTTCACTCCAGCTCCGGA-TTACATCTC 539
|||||||||||||||||||||||| || |||||||||||||| || | || |||||||||
Sbjct 471 TTGATCCGCATTTAAGAGCCACTGCTGAGGAATTTCACTCCACCT-CTGATTTACATCTC 529
Query 540 ATCAACCATGGAGAGGAAGAGCATGATGACAATAGTACTTATGCTGATATACCATTAACT 599
|||||||||||||| ||||| |||| |||||||||||||||||| |||||||| ||||||
Sbjct 530 ATCAACCATGGAGACGAAGATCATGGTGACAATAGTACTTATGCGGATATACCCTTAACT 589
Query 600 GGTGCTGCTTTTGAGAAGTTTACACATCATTTTCAAATTTTGGTTGTTAATTTTTATGCG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GGTGCTGCTTTTGAGAAGTTTACACATCATTTTCAAATTTTGGTTGTTAATTTTTATGCG 649
Query 660 CCGTGGTGCTACTGGAGTAATCGCCTGAAACCATCTTGGGAGAAAGCATCTCAAATAACG 719
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 650 CCATGGTGCTACTGGAGTAATCGCCTGAAACCATCTTGGGTGAAAGCATCTCAAATAACG 709
Query 720 AGAGAGAGATATAATCCTGGAACTGATGATCGTGTTCTTTTAGGAAGTGTTGATTGCACA 779
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AGAGAAAGATATAATCCTGGAACTGATGATCGTGTTCTTTTAGGAAGTGTTGATTGCACA 769
Query 780 GAAGAACCTACTCTATGTAAGAGCAATCATATACAAGGCTACCCATCTATTCGAATTTTC 839
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 770 GAAGAACCTACCCTATGTAAGAGCAATCATATACAAGGCTATCCATCTATTCGGATTTTC 829
Query 840 CGCAAAGGCAGTGATCTTAGGGAGGACCATGGGAATCACGAACATGAATCTTACTATGGA 899
|||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 830 CGCAGAGGCAGTGGTCTTAGGGAGGACCATGGGAACCACGAACATGAATCTTACTATGGA 889
Query 900 GATCGGGACACAGATAGCCTAGTCAAGATGGTAGAAGAACTGCTCAAACCTATAAAAAAG 959
|||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||
Sbjct 890 GATCGGGACACAGATAGCTTAGTCAAGATGGTGGAAGAACTGCTCAAACCTATTAAAAAG 949
Query 960 GAGGATCATAAGTTGGCTTTGGATGGTAAATCTGATAATGCGGCTTCAACTATTAAAAAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 950 GAGGATCATAAGTTGGCTTTGGATGGTAAATCTGATAATGCGGCTTCAACTTTTAAAAAG 1009
Query 1020 GCACCGGTTAGTGGAGGTTGTAGAATTGAAGGATATGTCCGTGCAAAGAAGGTTCCCGGC 1079
||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 1010 GCACCAGTTAGTGGAGGTTGTCGAATTGAAGGATATGTTCGCGCAAAGAAGGTTCCCGGC 1069
Query 1080 GAACTTGTAATCTCGGCTCATTCAGGAGCTCATTCATTTGATGCTTCTCAAATGAACATG 1139
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 GAACTTGTAATCTCAGCTCATTCAGGAGCTCATTCATTTGATGCTTCTCAAATGAACATG 1129
Query 1140 TCGCATATTGTTACCCATCTCTCATTTGGTACAATGGTTTCAGAAAGGTTATGGACTGAT 1199
|| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1130 TCTCATATTGTTACCCATCTAACATTTGGTACAATGGTTTCAGAAAGGTTGTGGACTGAT 1189
Query 1200 ATGAAACGATTACTGCCTTATCTTGGCCAAAGCCATGACAGGCTGAATGGAAAATCTTTC 1259
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 1190 ATGAAACGATTACTGCCTTATCTTGGCCAAAGCTATGATAGGCTGAATGGAAAATCGTTC 1249
Query 1260 ATAAATCAACGAAAATTTGAAGCTAATGTTACCATAGAACACTACTTGCAAATAGTCAAA 1319
|| ||| ||||| |||| || ||||||||||| || |||||||||||||||||| |||||
Sbjct 1250 ATCAATGAACGACAATTGGATGCTAATGTTACAATCGAACACTACTTGCAAATAATCAAA 1309
Query 1320 ACAGAGGTCATTTCAAGAAGATCCGGTAAAGAACACTCATTGATTGAGGAATATGAATAT 1379
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1310 ACAGAGGTCATTTCAAGAAGATCCGGCCAAGAACACTCATTGATTGAGGAATATGAATAT 1369
Query 1380 ACGGCTCATAGCAGCGTATCTCATAGTTACCATTATCCCGAAGCAAAGTTTCACTTTGAG 1439
|||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1370 ACGGCTCATAGCAGCGTAGCTCGTAGTTACCATTATCCTGAAGCAAAGTTTCACTTTGAG 1429
Query 1440 CTCTCTCCAATGCAGGTCTTAATAAGCGAGAATCCAAAGTCATTCTCGCACTTCATCACA 1499
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1430 CTCTCTCCAATGCAGGTCCTAATAAGCGAGAACCCAAAGTCATTCTCGCACTTCATCACA 1489
Query 1500 AATGTTTGCGCCATAATAGGAGGTGTTTTTACGGTCGCGGGAATACTAGATTCTATATTT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 AATGTTTGCGCCATAATAGGAGGTGTTTTTACGGTCGCGGGAATACTAGATTCTATATTT 1549
Query 1560 CAAAACACAGTTAGAATGGTGAAAAAGATCGAACTCGGGAAAAACATTTGATCAGGAATG 1619
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 CAAAACACAGTTAGAATGGTGAAAAAGATCGAACTCGGGAAAAACATTTGATCAGGAATA 1609
Query 1620 AGTGAGGTTAGATGTTAGTTTTTC-AGTTTTATTAAGATCTACAATACCATA-------- 1670
|||||||||||||||||||||||| | |||| ||||||||||||| ||||||
Sbjct 1610 AGTGAGGTTAGATGTTAGTTTTTCCAATTTT-TTAAGATCTACAAAACCATAAAGAGACA 1668
Query 1671 --T---TTT-TTACATACCTTGTAGACCCTGTTTATTTTCGAATAGCAGTTCGAAAGAGA 1724
| ||| ||| ||| |||||||||| |||||||||||||||||| ||| ||||||||
Sbjct 1669 CCTCAATTTCTTATATAACTTGTAGACCTTGTTTATTTTCGAATAGCCGTTTGAAAGAGA 1728
Query 1725 GAATAAAGAAACAATTTTATTTGCAGCATCTTGACTTCCTCTTGATTCTTTG 1776
||||| || |||||| || |||||||| |||||||||| |||||||||||||
Sbjct 1729 GAATAGAGTAACAATCTTCTTTGCAGCGTCTTGACTTCTTCTTGATTCTTTG 1780
> AT3G20560.1 | Symbols: ATPDIL5-3, PDI12, ATPDI12, PDIL5-3 | PDI-like
5-3 | chr3:7182035-7186567 FORWARD LENGTH=1776
Length=1776
Score = 1251 bits (677), Expect = 0.0
Identities = 1225/1486 (82%), Gaps = 51/1486 (3%)
Strand=Plus/Plus
Query 151 CAGCCATGGTTTCAACCACCAAGA-TCAAGTCCGTTGATTTCTACAGGAAAATCCCAAGA 209
|||| |||||||| ||||||| | |||| ||||||||||||||||||||||| || |||
Sbjct 143 CAGCTATGGTTTCCTCCACCAA-ACTCAAATCCGTTGATTTCTACAGGAAAATTCCGAGA 201
Query 210 GATTTGACAGAAGCATCTCTCTCTGGTGCTGGTTTGTCCATTGTAGCTGC-C-CTTGCTA 267
|||||||| || |||||||| || || ||||| || || ||||||||||| | ||| ||
Sbjct 202 GATTTGACGGAGGCATCTCTATCAGGCGCTGGGTTATCAATTGTAGCTGCTCTCTT--TA 259
Query 268 TGTTGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGGCAA-TCAACACTAGCACATCT 326
|| |||||||||||||||||||||||||||||||||||| || | ||||||| |||| ||
Sbjct 260 TGATGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGG-AAGTTAACACTACCACAGCT 318
Query 327 GTAATAGTTGACAAAAGCTCTGATGGGGACTTCTTA-GACATTGATTTCAACATCAGCTT 385
|| ||||||||||| ||| |||||| ||||||||| | |||||||||||||||||| ||
Sbjct 319 GTTATAGTTGACAAGAGCAGTGATGGTGACTTCTTACG-CATTGATTTCAACATCAGTTT 377
Query 386 TCCTGCCCTCTCATGTGAATTTGCATCAGTTGATGTGAGTGACGTGTTTGGAACTCACAG 445
|||||| || || |||||||||||||| ||||||||||| || || || ||||| | ||
Sbjct 378 TCCTGCTCTTTCCTGTGAATTTGCATCCGTTGATGTGAGCGATGTCTTGGGAACGAATAG 437
Query 446 GTTGAATATAACGAAAACGA-TTAGAAAAG-TTCCAATTGATCCGCATTTAAGAG-CCAC 502
|||||||||||| ||||| | || | ||| ||||||||||||| |||||||| | ||||
Sbjct 438 GTTGAATATAACAAAAAC-AGTTCG-CAAGTTTCCAATTGATCCACATTTAAG-GTCCAC 494
Query 503 TGGTGCGGAATTTCACTCCAG-CTCCGGATTACATCTCATCAACCATGGAGAGGAAGAGC 561
|| || ||||| ||||| | || | ||||||| ||| ||||||||||| ||| | |
Sbjct 495 CGGCGCAGAATTCCACTCTGGCCT-TGCATTACATAACATAAACCATGGAGAAGAA-A-C 551
Query 562 ATGATGACAATAG--TACTTATGCTGATATACCATTAACTGGTGCT-GCTTTTGAGAAG- 617
| | | || || | || ||| || ||||||||| || ||||| | |||| ||||
Sbjct 552 -T-AAG-GAAGAGTTTCCTGATGGTGCTATACCATTGACCAGTGCTAG-TTTT--GAAGC 605
Query 618 TTTA-CACATCATTTTCAAATTTTGGTTGTTAATTTTTATGCGCCGTGGTGCTACTGGAG 676
||| ||||||| |||| ||| ||||||||||| ||| |||| || ||||||||||||||
Sbjct 606 ATTATCACATCACTTTCCAATATTGGTTGTTAACTTTAATGCACCATGGTGCTACTGGAG 665
Query 677 TAATCGCCTGAAACCATCTTGGGAGAAAGCATCTCAA-ATAACGAGAGAGAGATATAATC 735
|||||| |||||||| || |||||||||||| || || |||| | | | |||||| |||
Sbjct 666 TAATCGTCTGAAACCTTCATGGGAGAAAGCAGCT-AATATAATAAAACAAAGATATGATC 724
Query 736 CTGGAA-CTGATGATCGTGTTCTTTTAGGAAGTGTTGATTGCACAGAAGAACCTACTCTA 794
|| ||| |||||| ||||||||| |||||| |||||||||||| ||||||||| | |||
Sbjct 725 CT-GAAGCTGATGGCCGTGTTCTTCTAGGAAATGTTGATTGCACGGAAGAACCTGCGCTA 783
Query 795 TGTAAGAGCAATCATATACAAGGCTACCCATCTATTCGAATTTTCCGCAAAGGCAGTGAT 854
|||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 784 TGTAAGAGGAATCACATACAAGGCTATCCATCTATTCGTATTTTCCGCAAAGGCAGTGAC 843
Query 855 CTTAGGGAGGACCATGGGA-ATCACGAACATGAATCTTACTATGGAGATCGGGACACAGA 913
||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 844 CTTAGAGAGGACCAT-GGACACCACGAACATGAATCTTACTATGGAGATCGGGACACAGA 902
Query 914 TAGCCTAGTCAAGATGGTAGAAGAACTGCTCAAACCTATAAAAAAGGAGGA-TCATAAGT 972
|| |||| |||||||| || | |||| || |||||| | |||| | ||| |||
Sbjct 903 CAGTATAGTTAAGATGGTGGAGGGACTGGTCGCACCTATCCACCCGGAG-ACTCACAAGG 961
Query 973 TGGCTTTGGATGGTAAATCTGATAATGCGGCTTCAAC-TATTAAAAAGGCACCGGTTAGT 1031
||||||||||||| ||||| || || | | | ||| | ||||||||| ||| ||||
Sbjct 962 TGGCTTTGGATGGAAAATCCAATGATACTG-TAAAACATCTTAAAAAGGGACCAGTTACA 1020
Query 1032 GGAGGTTGTAGAATTGAAGGATATGTCCGTGCAAAGAAGGTTCCCGGCGAA-CTTGTAAT 1090
|||||||||||| ||||||| ||||| |||| |||||||||||| || || || || ||
Sbjct 1021 GGAGGTTGTAGAGTTGAAGGTTATGTACGTGTAAAGAAGGTTCCAGGA-AATCTCGTGAT 1079
Query 1091 CTCGGCTCATTCAGGAGCTCATTCATTTGATGCTTCTCAAATGAACATGTCGCATATTGT 1150
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1080 CTCAGCTCATTCAGGAGCTCATTCATTTGATTCTTCTCAAATGAACATGTCGCATGTTGT 1139
Query 1151 TACCCATCTCTCATTTGGTACAATGGTTTCAGAAAGGTTA-TGGACTGATATGAAACGAT 1209
| | ||| | || ||||| | ||| |||| ||| | || || |||||||| ||||
Sbjct 1140 TTCTCATTTTTCGTTTGGGAGGATGATTTCTCCTAGGCTGCTG-ACCGATATGAAGCGAT 1198
Query 1210 TACTGCCTTATCTTGGCCAAAGCCATGACAGGCTGAATGGAAAATCTTTCATAAATCAAC 1269
| |||| |||||||||| |||||||||||||||| ||||||| | |||||||||||||
Sbjct 1199 TGTTGCCATATCTTGGCCTAAGCCATGACAGGCTGGATGGAAAGGCATTCATAAATCAAC 1258
Query 1270 GAAAA-TTTGAAGCTAATGTTACCATAGAACACTAC-TTGCAAATAGTCAAAACAGAGGT 1327
| | |||| || ||||| || || ||||||||| || |||| |||||||||||||||
Sbjct 1259 -ATGAGTTTGGTGCCAATGTCACTATCGAACACTACCTT-CAAACAGTCAAAACAGAGGT 1316
Query 1328 CATTTCAAGAAGATCCGGTAAAGAACACTCATTGATTGAGGAATATGAATATACGGCTCA 1387
|||| |||||||||||||| ||||||| ||| |||| |||||||||||||| || |||||
Sbjct 1317 CATTACAAGAAGATCCGGTCAAGAACATTCACTGATAGAGGAATATGAATACACCGCTCA 1376
Query 1388 TAGCAGCGTATCTCATAGTTACCA-TTATCCCGAAGCAAAGTTTCACTTTGAGCTCTCTC 1446
|||||||| |||| | |||| | ||| |||| || ||||||||||||||||||||||
Sbjct 1377 CAGCAGCGTGGCTCAGACTTACTACTTA-CCCGTTGCGAAGTTTCACTTTGAGCTCTCTC 1435
Query 1447 CAATGCAGGTCTTAATAAGCGAGAATCCAAAGTCATTCTCGCACTTCATCACAAATGTTT 1506
| |||||| ||||||||| ||| || || ||||| ||||| ||||||||||||||| | |
Sbjct 1436 CTATGCAGATCTTAATAACCGAAAACCCGAAGTCCTTCTCACACTTCATCACAAATCTGT 1495
Query 1507 GCGCCATAATAGGAGGTGTTTTTACGGTCGCGGGAATACTAGATTCTATATTTCAAAACA 1566
| ||||| || || |||||||| ||||| || |||||||||||||| || ||||| || |
Sbjct 1496 GTGCCATTATTGGTGGTGTTTTCACGGTTGCCGGAATACTAGATTCGATTTTTCACAATA 1555
Query 1567 CAGTTAGAATGGTGAAAAAGATCGAACTCGGGAAAAACATTTGATC 1612
|||| ||| |||| |||||| ||||||| |||||||||||||||||
Sbjct 1556 CAGTAAGACTGGTAAAAAAGGTCGAACTTGGGAAAAACATTTGATC 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87850953750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5