BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474220 Length=852 Score E Sequences producing significant alignments: (Bits) Value AT2G13640.1 | Symbols: | Transcription factor IIS family prote... 435 4e-121 AT5G27310.1 | Symbols: | Transcription factor IIS family prote... 429 2e-119 AT2G27780.1 | Symbols: | Transcription factor IIS family prote... 418 4e-116 > AT2G13640.1 | Symbols: | Transcription factor IIS family protein | chr2:5686136-5687290 REVERSE LENGTH=1155 Length=1155 Score = 435 bits (235), Expect = 4e-121 Identities = 307/342 (90%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 433 GGTTCATTGATAATGAAGACAATTAAAACAGAAAAGGAGCTGTATAACAAGAAAGTTGAT 492 ||||||||||||| |||||| ||||||||||||||||||| | || |||||||| ||| Sbjct 730 GGTTCATTGATAAAGAAGAC---TAAAACAGAAAAGGAGCTGAAGAAGAAGAAAGTGGAT 786 Query 493 GAGATGGTAAAACAGTTTGTAGCTGCAAATAAAGCTGTTGATGTGGCCAACACTAAGGGC 552 |||||||| || ||| | ||| ||||| ||||||| ||||||||||||| ||||||| Sbjct 787 GAGATGGTGAAGTTGTTCGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGT 846 Query 553 GTTCTCTCTGGTAAACGAGAGGTGTCTCGTTGCATTGACGCTCTCTTGTTACTGATGAAA 612 |||||||| ||||||| |||||||||||| |||||||||||||||| |||| ||||||| Sbjct 847 GTTCTCTCAGGTAAACCAGAGGTGTCTCGCTGCATTGACGCTCTCTCGTTATTGATGAAG 906 Query 613 ATCAATATTACCCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGATTT 672 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 907 ATCAACATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTT 966 Query 673 ACAAAACATAAAGACCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACTTTTGGAGA 732 |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 967 ACAAAACATAAAGATCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAGA 1026 Query 733 CAGAGAATCAGAGAACAAGAACGTAAAGATTCTGG-ACCAAG 773 ||||| ||||||||||||||||||||| | |||| |||||| Sbjct 1027 CAGAGGATCAGAGAACAAGAACGTAAAAAGTCTGTTACCAAG 1068 Score = 182 bits (98), Expect = 6e-45 Identities = 159/186 (85%), Gaps = 14/186 (8%) Strand=Plus/Plus Query 120 AGGAACTCT--AATCTGTAAGGAAGCTCAAGCCTTGTTTCATTCATGGTTGAAGACAATC 177 |||||| || |||| |||||||||| |||||||||||||||||||||||||||||| || Sbjct 226 AGGAACCCTAGAATCCGTAAGGAAGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTC 285 Query 178 TACGCACAAGGAAGCGACAACTCTTTCAAAGCTGATC--A-------TC-T--GAAGATG 225 |||||||| ||||||||||||||||||| ||||| || | || | ||||||| Sbjct 286 TACGCACATGGAAGCGACAACTCTTTCACAGCTGCTCTTACCAAAGATCGTCTGAAGATG 345 Query 226 AAGAAGCATGTTCTAACAAGGTGTTCGGAGTTGAAGAAGAAAGAAGTACAGAGATCTATG 285 |||||||||||||||| || |||||||||||||||||||||||||| || | || ||||| Sbjct 346 AAGAAGCATGTTCTAAAAATGTGTTCGGAGTTGAAGAAGAAAGAAGAACCGGGAACTATG 405 Query 286 GCTCGT 291 |||||| Sbjct 406 GCTCGT 411 > AT5G27310.1 | Symbols: | Transcription factor IIS family protein | chr5:9625449-9626561 FORWARD LENGTH=1113 Length=1113 Score = 429 bits (232), Expect = 2e-119 Identities = 306/342 (89%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 433 GGTTCATTGATAATGAAGACAATTAAAACAGAAAAGGAGCTGTATAACAAGAAAGTTGAT 492 ||||||||||||| |||||| |||||| |||||||||||| | ||||||||||| ||| Sbjct 730 GGTTCATTGATAAAGAAGAC---TAAAACCGAAAAGGAGCTGAAGAACAAGAAAGTGGAT 786 Query 493 GAGATGGTAAAACAGTTTGTAGCTGCAAATAAAGCTGTTGATGTGGCCAACACTAAGGGC 552 |||||||| || ||||| ||| ||||| ||||||| ||||||||||||| ||||||| Sbjct 787 GAGATGGTGAAGTTGTTTGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGT 846 Query 553 GTTCTCTCTGGTAAACGAGAGGTGTCTCGTTGCATTGACGCTCTCTTGTTACTGATGAAA 612 |||||||| ||||||| ||||| |||||| |||||| ||||||||| |||| ||||||| Sbjct 847 GTTCTCTCAGGTAAACCAGAGGCGTCTCGCTGCATTAACGCTCTCTCGTTATTGATGAAG 906 Query 613 ATCAATATTACCCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGATTT 672 ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 907 ATCAACATTACTCCAAAACCAAAAGAACCAAGGAGTATGATGGATAAGCTTGAGGGACTT 966 Query 673 ACAAAACATAAAGACCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACTTTTGGAGA 732 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 967 ACAAAACATAAAGACCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAGA 1026 Query 733 CAGAGAATCAGAGAACAAGAACGTAAAGATTCTGG-ACCAAG 773 ||||| ||||||||||||||||||||| | |||| |||||| Sbjct 1027 CAGAGGATCAGAGAACAAGAACGTAAAAAGTCTGTTACCAAG 1068 Score = 176 bits (95), Expect = 3e-43 Identities = 156/183 (85%), Gaps = 14/183 (8%) Strand=Plus/Plus Query 120 AGGAACTCT--AATCTGTAAGGAAGCTCAAGCCTTGTTTCATTCATGGTTGAAGACAATC 177 |||||| || |||| |||||||||| |||||||||||||||||||||||||||||| || Sbjct 226 AGGAACCCTAGAATCCGTAAGGAAGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTC 285 Query 178 TACGCACAAGGAAGCGACAACTCTTTCAAAGCTGATC--A-------TC-T--GAAGATG 225 |||||||| ||||||||||||||||||||||||| || | || | ||||||| Sbjct 286 TACGCACATGGAAGCGACAACTCTTTCAAAGCTGCTCTTACCAAGGATCGTCTGAAGATG 345 Query 226 AAGAAGCATGTTCTAACAAGGTGTTCGGAGTTGAAGAAGAAAGAAGTACAGAGATCTATG 285 ||||||||||||||||||||||||||||||||||||||| |||| | || | || |||| Sbjct 346 AAGAAGCATGTTCTAACAAGGTGTTCGGAGTTGAAGAAGGAAGACGAACCGGGAACTATC 405 Query 286 GCT 288 ||| Sbjct 406 GCT 408 > AT2G27780.1 | Symbols: | Transcription factor IIS family protein | chr2:11845472-11846578 REVERSE LENGTH=1107 Length=1107 Score = 418 bits (226), Expect = 4e-116 Identities = 305/343 (89%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 433 GGTTCATTGATAATGAAGACAATTAAAACAGAAAAGGAGCTGTATAACAAGAAAGTTGAT 492 ||||||||||||| |||||| ||||||||||||||||||| | || |||||||| ||| Sbjct 724 GGTTCATTGATAAAGAAGAC---TAAAACAGAAAAGGAGCTGAAGAAGAAGAAAGTGGAT 780 Query 493 GAGATGGTAAAACAGTTTGTAGCTGCAAATAAAGCTGTTGATGTGGCCAACACTAAGGGC 552 |||||||| || ||||| ||| ||||| ||||||| ||||||||||||| ||||||| Sbjct 781 GAGATGGTGAAGTTGTTTGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGA 840 Query 553 GTTCTCTCTGGTAAACG-AGAGGTGTCTCGTTGCATTGACGCTCTCTTGTTACTGATGAA 611 || || ||||||||| | ||||| |||||| |||||||||||||||| | || ||||||| Sbjct 841 GTACTTTCTGGTAAA-GCAGAGGCGTCTCGCTGCATTGACGCTCTCTCGGTATTGATGAA 899 Query 612 AATCAATATTACCCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGATT 671 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 900 GATCAACATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACT 959 Query 672 TACAAAACATAAAGACCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACTTTTGGAG 731 |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 960 TACAAAACATAAAGACCGCATGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAG 1019 Query 732 ACAGAGAATCAGAGAACAAGAACGTAAAGATTCTGG-ACCAAG 773 |||||| ||||||||||||||||||||| | |||| |||||| Sbjct 1020 ACAGAGGATCAGAGAACAAGAACGTAAAAAGTCTGTTACCAAG 1062 Score = 171 bits (92), Expect = 1e-41 Identities = 155/183 (85%), Gaps = 14/183 (8%) Strand=Plus/Plus Query 120 AGGAACTCT--AATCTGTAAGGAAGCTCAAGCCTTGTTTCATTCATGGTTGAAGACAATC 177 |||||| || |||| |||||| ||| |||||||||||||||||||||||||||||| || Sbjct 220 AGGAACCCTAGAATCCGTAAGGCAGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTC 279 Query 178 TACGCACAAGGAAGCGACAACTCTTTCAAAGCTGATC--A-------TC-T--GAAGATG 225 |||||||| ||||||||||||||||||||||||| || | || | ||||||| Sbjct 280 TACGCACATGGAAGCGACAACTCTTTCAAAGCTGCTCTTACCAAGGATCGTCTGAAGATG 339 Query 226 AAGAAGCATGTTCTAACAAGGTGTTCGGAGTTGAAGAAGAAAGAAGTACAGAGATCTATG 285 |||||||||||||||||||||||||||||||||||||| |||| | || | || ||||| Sbjct 340 GAGAAGCATGTTCTAACAAGGTGTTCGGAGTTGAAGAAGGAAGACGAACCGGGAACTATG 399 Query 286 GCT 288 ||| Sbjct 400 GCT 402 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41543639569 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5