BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474220
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13640.1 | Symbols: | Transcription factor IIS family prote... 435 4e-121
AT5G27310.1 | Symbols: | Transcription factor IIS family prote... 429 2e-119
AT2G27780.1 | Symbols: | Transcription factor IIS family prote... 418 4e-116
> AT2G13640.1 | Symbols: | Transcription factor IIS family protein
| chr2:5686136-5687290 REVERSE LENGTH=1155
Length=1155
Score = 435 bits (235), Expect = 4e-121
Identities = 307/342 (90%), Gaps = 4/342 (1%)
Strand=Plus/Plus
Query 433 GGTTCATTGATAATGAAGACAATTAAAACAGAAAAGGAGCTGTATAACAAGAAAGTTGAT 492
||||||||||||| |||||| ||||||||||||||||||| | || |||||||| |||
Sbjct 730 GGTTCATTGATAAAGAAGAC---TAAAACAGAAAAGGAGCTGAAGAAGAAGAAAGTGGAT 786
Query 493 GAGATGGTAAAACAGTTTGTAGCTGCAAATAAAGCTGTTGATGTGGCCAACACTAAGGGC 552
|||||||| || ||| | ||| ||||| ||||||| ||||||||||||| |||||||
Sbjct 787 GAGATGGTGAAGTTGTTCGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGT 846
Query 553 GTTCTCTCTGGTAAACGAGAGGTGTCTCGTTGCATTGACGCTCTCTTGTTACTGATGAAA 612
|||||||| ||||||| |||||||||||| |||||||||||||||| |||| |||||||
Sbjct 847 GTTCTCTCAGGTAAACCAGAGGTGTCTCGCTGCATTGACGCTCTCTCGTTATTGATGAAG 906
Query 613 ATCAATATTACCCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGATTT 672
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 907 ATCAACATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTT 966
Query 673 ACAAAACATAAAGACCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACTTTTGGAGA 732
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 967 ACAAAACATAAAGATCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAGA 1026
Query 733 CAGAGAATCAGAGAACAAGAACGTAAAGATTCTGG-ACCAAG 773
||||| ||||||||||||||||||||| | |||| ||||||
Sbjct 1027 CAGAGGATCAGAGAACAAGAACGTAAAAAGTCTGTTACCAAG 1068
Score = 182 bits (98), Expect = 6e-45
Identities = 159/186 (85%), Gaps = 14/186 (8%)
Strand=Plus/Plus
Query 120 AGGAACTCT--AATCTGTAAGGAAGCTCAAGCCTTGTTTCATTCATGGTTGAAGACAATC 177
|||||| || |||| |||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 226 AGGAACCCTAGAATCCGTAAGGAAGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTC 285
Query 178 TACGCACAAGGAAGCGACAACTCTTTCAAAGCTGATC--A-------TC-T--GAAGATG 225
|||||||| ||||||||||||||||||| ||||| || | || | |||||||
Sbjct 286 TACGCACATGGAAGCGACAACTCTTTCACAGCTGCTCTTACCAAAGATCGTCTGAAGATG 345
Query 226 AAGAAGCATGTTCTAACAAGGTGTTCGGAGTTGAAGAAGAAAGAAGTACAGAGATCTATG 285
|||||||||||||||| || |||||||||||||||||||||||||| || | || |||||
Sbjct 346 AAGAAGCATGTTCTAAAAATGTGTTCGGAGTTGAAGAAGAAAGAAGAACCGGGAACTATG 405
Query 286 GCTCGT 291
||||||
Sbjct 406 GCTCGT 411
> AT5G27310.1 | Symbols: | Transcription factor IIS family protein
| chr5:9625449-9626561 FORWARD LENGTH=1113
Length=1113
Score = 429 bits (232), Expect = 2e-119
Identities = 306/342 (89%), Gaps = 4/342 (1%)
Strand=Plus/Plus
Query 433 GGTTCATTGATAATGAAGACAATTAAAACAGAAAAGGAGCTGTATAACAAGAAAGTTGAT 492
||||||||||||| |||||| |||||| |||||||||||| | ||||||||||| |||
Sbjct 730 GGTTCATTGATAAAGAAGAC---TAAAACCGAAAAGGAGCTGAAGAACAAGAAAGTGGAT 786
Query 493 GAGATGGTAAAACAGTTTGTAGCTGCAAATAAAGCTGTTGATGTGGCCAACACTAAGGGC 552
|||||||| || ||||| ||| ||||| ||||||| ||||||||||||| |||||||
Sbjct 787 GAGATGGTGAAGTTGTTTGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGT 846
Query 553 GTTCTCTCTGGTAAACGAGAGGTGTCTCGTTGCATTGACGCTCTCTTGTTACTGATGAAA 612
|||||||| ||||||| ||||| |||||| |||||| ||||||||| |||| |||||||
Sbjct 847 GTTCTCTCAGGTAAACCAGAGGCGTCTCGCTGCATTAACGCTCTCTCGTTATTGATGAAG 906
Query 613 ATCAATATTACCCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGATTT 672
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 907 ATCAACATTACTCCAAAACCAAAAGAACCAAGGAGTATGATGGATAAGCTTGAGGGACTT 966
Query 673 ACAAAACATAAAGACCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACTTTTGGAGA 732
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 967 ACAAAACATAAAGACCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAGA 1026
Query 733 CAGAGAATCAGAGAACAAGAACGTAAAGATTCTGG-ACCAAG 773
||||| ||||||||||||||||||||| | |||| ||||||
Sbjct 1027 CAGAGGATCAGAGAACAAGAACGTAAAAAGTCTGTTACCAAG 1068
Score = 176 bits (95), Expect = 3e-43
Identities = 156/183 (85%), Gaps = 14/183 (8%)
Strand=Plus/Plus
Query 120 AGGAACTCT--AATCTGTAAGGAAGCTCAAGCCTTGTTTCATTCATGGTTGAAGACAATC 177
|||||| || |||| |||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 226 AGGAACCCTAGAATCCGTAAGGAAGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTC 285
Query 178 TACGCACAAGGAAGCGACAACTCTTTCAAAGCTGATC--A-------TC-T--GAAGATG 225
|||||||| ||||||||||||||||||||||||| || | || | |||||||
Sbjct 286 TACGCACATGGAAGCGACAACTCTTTCAAAGCTGCTCTTACCAAGGATCGTCTGAAGATG 345
Query 226 AAGAAGCATGTTCTAACAAGGTGTTCGGAGTTGAAGAAGAAAGAAGTACAGAGATCTATG 285
||||||||||||||||||||||||||||||||||||||| |||| | || | || ||||
Sbjct 346 AAGAAGCATGTTCTAACAAGGTGTTCGGAGTTGAAGAAGGAAGACGAACCGGGAACTATC 405
Query 286 GCT 288
|||
Sbjct 406 GCT 408
> AT2G27780.1 | Symbols: | Transcription factor IIS family protein
| chr2:11845472-11846578 REVERSE LENGTH=1107
Length=1107
Score = 418 bits (226), Expect = 4e-116
Identities = 305/343 (89%), Gaps = 6/343 (2%)
Strand=Plus/Plus
Query 433 GGTTCATTGATAATGAAGACAATTAAAACAGAAAAGGAGCTGTATAACAAGAAAGTTGAT 492
||||||||||||| |||||| ||||||||||||||||||| | || |||||||| |||
Sbjct 724 GGTTCATTGATAAAGAAGAC---TAAAACAGAAAAGGAGCTGAAGAAGAAGAAAGTGGAT 780
Query 493 GAGATGGTAAAACAGTTTGTAGCTGCAAATAAAGCTGTTGATGTGGCCAACACTAAGGGC 552
|||||||| || ||||| ||| ||||| ||||||| ||||||||||||| |||||||
Sbjct 781 GAGATGGTGAAGTTGTTTGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGA 840
Query 553 GTTCTCTCTGGTAAACG-AGAGGTGTCTCGTTGCATTGACGCTCTCTTGTTACTGATGAA 611
|| || ||||||||| | ||||| |||||| |||||||||||||||| | || |||||||
Sbjct 841 GTACTTTCTGGTAAA-GCAGAGGCGTCTCGCTGCATTGACGCTCTCTCGGTATTGATGAA 899
Query 612 AATCAATATTACCCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGATT 671
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 GATCAACATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACT 959
Query 672 TACAAAACATAAAGACCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACTTTTGGAG 731
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 960 TACAAAACATAAAGACCGCATGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAG 1019
Query 732 ACAGAGAATCAGAGAACAAGAACGTAAAGATTCTGG-ACCAAG 773
|||||| ||||||||||||||||||||| | |||| ||||||
Sbjct 1020 ACAGAGGATCAGAGAACAAGAACGTAAAAAGTCTGTTACCAAG 1062
Score = 171 bits (92), Expect = 1e-41
Identities = 155/183 (85%), Gaps = 14/183 (8%)
Strand=Plus/Plus
Query 120 AGGAACTCT--AATCTGTAAGGAAGCTCAAGCCTTGTTTCATTCATGGTTGAAGACAATC 177
|||||| || |||| |||||| ||| |||||||||||||||||||||||||||||| ||
Sbjct 220 AGGAACCCTAGAATCCGTAAGGCAGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTC 279
Query 178 TACGCACAAGGAAGCGACAACTCTTTCAAAGCTGATC--A-------TC-T--GAAGATG 225
|||||||| ||||||||||||||||||||||||| || | || | |||||||
Sbjct 280 TACGCACATGGAAGCGACAACTCTTTCAAAGCTGCTCTTACCAAGGATCGTCTGAAGATG 339
Query 226 AAGAAGCATGTTCTAACAAGGTGTTCGGAGTTGAAGAAGAAAGAAGTACAGAGATCTATG 285
|||||||||||||||||||||||||||||||||||||| |||| | || | || |||||
Sbjct 340 GAGAAGCATGTTCTAACAAGGTGTTCGGAGTTGAAGAAGGAAGACGAACCGGGAACTATG 399
Query 286 GCT 288
|||
Sbjct 400 GCT 402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5