BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474223
Length=581
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51060.1 | Symbols: HTA10 | histone H2A 10 | chr1:18926876-1... 761 0.0
AT3G20670.1 | Symbols: HTA13 | histone H2A 13 | chr3:7229407-72... 451 3e-126
AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily... 372 2e-102
AT4G07507.1 | Symbols: | transposable element gene | chr4:4309... 99.0 4e-20
> AT1G51060.1 | Symbols: HTA10 | histone H2A 10 | chr1:18926876-18927646
FORWARD LENGTH=674
Length=674
Score = 761 bits (412), Expect = 0.0
Identities = 455/476 (96%), Gaps = 1/476 (0%)
Strand=Plus/Plus
Query 2 AATTCAATTCGTACAACTTTTTCCCTCTCATCTTTTCACAAAAGAATTCGAATCGATTTC 61
||||| |||| || |||| |||||||||||||||| |||||||| |||| ||||||||||
Sbjct 12 AATTCGATTCTTATAACTGTTTCCCTCTCATCTTTACACAAAAGTATTCTAATCGATTTC 71
Query 62 AATGGCGGGTCGTGGCAAAACTCTCGGATCTGGATCTGCGAAGAAGGCAACAACAAGAAG 121
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 72 AATGGCGGGTCGTGGTAAAACACTCGGATCTGGGTCTGCGAAGAAGGCAACAACAAGAAG 131
Query 122 CAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCGTTTCTTGAAGAAAGGCAA 181
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 132 CAGCAAAGCCGGTCTCCAATTCCCTGTGGGTCGTATCGCTCGTTTCTTGAAGAAAGGCAA 191
Query 182 ATACGCCGAACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATACCT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 ATACGCCGAACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATACCT 251
Query 242 CGCCGCCGAGGTTTTGGAATTGGCTGGAAACGCAGCGAGAGATAACAAGAAGACAAGGAT 301
|||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 252 CGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCGAGGGATAACAAGAAGACGAGGAT 311
Query 302 TGTTCCGAGGCATATTCAATTGGCGGTGAGGAACGATGAAGAATTGAGCAAATTGCTTGG 361
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TGTTCCAAGGCATATTCAATTGGCGGTGAGGAACGATGAAGAATTGAGCAAATTGCTTGG 371
Query 362 TGATGTGACTATTGCTAATGGTGGTGTGATGCCTAACATTCACAATCTTCTTCTTCCTAA 421
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 372 AGATGTGACTATTGCTAATGGAGGTGTGATGCCTAACATTCACAATCTTCTTCTTCCTAA 431
Query 422 GAAGACTGGTGCTTCCAAGCCATCTGCTGAAGACGATTGATTAAGTCAACCAAATC 477
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 432 GAAGACCGGTGCTTCCAAGCCATCTGCTGAAGACGATTGATTAA-TCAACCAAATC 486
Score = 141 bits (76), Expect = 7e-33
Identities = 97/106 (92%), Gaps = 5/106 (5%)
Strand=Plus/Plus
Query 478 AGTAATTTAGATTAGATCTATGGTGAAGAAGAAGAATCTATCTTTTGTGTTTTCTT-TTT 536
|||||||||||||||||||||||||||| | ||||||||||||| |||||||| || |
Sbjct 526 AGTAATTTAGATTAGATCTATGGTGAAG-A-AAGAATCTATCTTCTGTGTTTT-TTGAAT 582
Query 537 TCAATTGAATGTTCATATGC-TTCAATTTCTTATGGAATCAAGATT 581
| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 583 TGAATTGAATGTTCATATGCTTTCAATTTCTTATGGAATCAAGATT 628
> AT3G20670.1 | Symbols: HTA13 | histone H2A 13 | chr3:7229407-7230146
FORWARD LENGTH=647
Length=647
Score = 451 bits (244), Expect = 3e-126
Identities = 356/409 (87%), Gaps = 11/409 (3%)
Strand=Plus/Plus
Query 62 AATGGCGGGTCGTGGCAAAACTCTCGGATCTGG-ATCTGCGAAGAAGGCAACAACAAGAA 120
|||||||||||| |||||||||||||||||||| | ||| ||||| ||||| | ||||
Sbjct 65 AATGGCGGGTCGCGGCAAAACTCTCGGATCTGGCGT-TGCTAAGAAATCAACATCGAGAA 123
Query 121 GCAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCG-TTTCTTGAAGAAAGGC 179
|||||||||||||||| |||||||| || |||||||||||||| |||| | ||||| |||
Sbjct 124 GCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGTATCGCTCGTTTTC-TAAAGAACGGC 182
Query 180 AAATACGCCGA-ACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATA 238
|| |||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AAGTACG-CAACACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATA 241
Query 239 CCTCGCCGCCGAGGTTTTGGAATTGGCTGGAAACGCAGCGAGAGATAACAAGAAGACAAG 298
||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 242 CCTCGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCTAGGGATAACAAGAAGACTAG 301
Query 299 GATTGTTCCGAGG-CATATTCAATTGGCGGTGAGGAACGATGAAGAATTGAGCAAATTGC 357
|||||| || | | || ||||| | |||||||| |||||||| || |||| ||| |||
Sbjct 302 GATTGTGCC-ACGTCACATTCAGCTCGCGGTGAGAAACGATGAGGAGCTGAGTAAACTGC 360
Query 358 TTGGTGATGTGACTATTGCTAATGGTGGTGTGATGCCTAACATTCACAATCTTCTTCTTC 417
|||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 361 TTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTTCTTC 420
Query 418 CTAAGAA-GACTGGTGCTTCCAAGCCATCTGCTGAAGACGATT-GATTA 464
| ||||| | |||||||||| || || || ||||| || |||| |||||
Sbjct 421 CCAAGAAAG-CTGGTGCTTCAAAACCTTCCGCTGATGAAGATTAGATTA 468
> AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily
protein | chr5:22196477-22197492 FORWARD LENGTH=669
Length=669
Score = 372 bits (201), Expect = 2e-102
Identities = 327/387 (84%), Gaps = 12/387 (3%)
Strand=Plus/Plus
Query 62 AATGGCGGGTCGTGGCAAAACTCTCGGATCTGGAT-CTGCGAAGAAGGCAACAACAAGAA 120
|||||| |||||||| |||||||| ||||| || | |||||||| || ||| | | |
Sbjct 63 AATGGCTGGTCGTGGAAAAACTCTTGGATCCGG-TGGGGCGAAGAAAGCTACATCTCGGA 121
Query 121 GCAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCGTTTCTTGAA-GAAAGGC 179
| ||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 122 GTAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCGTTTCTTAAAAGCC-GGT 180
Query 180 AAATACGCCGAACGTGTTGGTGCCGGAGCTCCGGTTTA-CTTAGCCGCCGTTCTCGAATA 238
|||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 181 AAATACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTC-GCCGCCGTTCTCGAATA 239
Query 239 CCTCGCCGCCGAGGTT-TTGGAATTGGCTGGAAACGCAGCGAGAGATAACAAGAAGACAA 297
| |||||||||||| ||| |||| |||||||||||||| ||||| ||||||||||||
Sbjct 240 TTTGGCCGCCGAGGTTCTTG-AATTAGCTGGAAACGCAGCAAGAGACAACAAGAAGACAC 298
Query 298 GGATTGTTCCGAGGCATATTCAA-TTGGCGGTGAGGAACGATGAAGAATTGAGCAAA-TT 355
| |||||||| | || ||||| ||| |||| || |||||||| || | ||||| ||
Sbjct 299 GTATTGTTCCTCGTCACATTCAGCTTG-CGGTCAGAAACGATGAGGAGCTAAGCAAGCTT 357
Query 356 GCTTGGTGATGTGACTATTGCTAATGGTGGTGTGATGCCTAACATTCACAATCTTCTTCT 415
||||| |||||||| ||||||||||| || |||||||||||||| |||||||| |||||
Sbjct 358 -CTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTCT 416
Query 416 TCCTAAGAAGACTGGTGCTTCCAAGCC 442
||||||||| |||||||||| |||||
Sbjct 417 CCCTAAGAAGGCTGGTGCTTCAAAGCC 443
> AT4G07507.1 | Symbols: | transposable element gene | chr4:4309156-4310671
FORWARD LENGTH=1516
Length=1516
Score = 99.0 bits (53), Expect = 4e-20
Identities = 110/136 (81%), Gaps = 9/136 (7%)
Strand=Plus/Plus
Query 252 GTTTTGGAATTGGCTGGAAACGCAGCGAGAG-ATAACAAGAAGACAAGGATTGTTCCG-A 309
|||||||||||||||||||||||||||| || ||||||||||||| ||| |||| || |
Sbjct 1224 GTTTTGGAATTGGCTGGAAACGCAGCGA-AGGATAACAAGAAGACTAGGCTTGTGCCACA 1282
Query 310 GGCATATTCAA-TTGGCGGTGAGGAACGATGAAGAATTGAGCAAATTGCTTGGTGATGTG 368
|| || || ||| | ||||| |||||||| || ||| || |||||||||||||||
Sbjct 1283 T-CACATACATCTTG-CAGTGAGAAACGATGAGGAGCCGAGGAAGTTGCTTGGTGATGTG 1340
Query 369 ACT-ATTGCTAATGGT 383
| | ||||| || |||
Sbjct 1341 A-TGATTGCAAA-GGT 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27930185732
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5