BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474225
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51100.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1395 0.0
> AT1G51100.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 26 Blast hits to 26 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18934308-18935193
FORWARD LENGTH=886
Length=886
Score = 1395 bits (755), Expect = 0.0
Identities = 847/890 (95%), Gaps = 11/890 (1%)
Strand=Plus/Plus
Query 1 AACACTCTTCGTCTAAGCTTTTAAAATCAATGGCTTCCACTTCCACATTTCTTCTTCAAT 60
|||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||
Sbjct 6 AACACTCTTCCTCTAAGCTTTTTAAATCAATGGCTTCCACTTCCACACTTCTTCTTCCAT 65
Query 61 CTCTCTCTTCTACTAACCTTCACATCACAGTCCCTATAAGAACCTATAGCTTCGGTCTTC 120
||||||| |||| || ||||||||| ||||||| ||||||||| ||||||||| || ||
Sbjct 66 CTCTCTCCTCTAAGAATCTTCACATCGCAGTCCCAATAAGAACCAATAGCTTCGTTCGTC 125
Query 121 GAACAACAAAATTCTCAACAAAATGTTCATCAAAACCAGAGCCAAAGGATCAATTCATCA 180
|||||||||| ||||||||||||||||| || || |||||| ||||||||||||||||||
Sbjct 126 GAACAACAAAGTTCTCAACAAAATGTTCGTCGAATCCAGAGTCAAAGGATCAATTCATCA 185
Query 181 ATCTCACACCAGCACCTGAATCAATCAACACAACAAGCGCAGAGAAATTCCCAATAGAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 ATCTCACACCAGCACCTGAATCAATCAACACAACAAGCGCAGAGAAATTCCCAATAGAGA 245
Query 241 AACGAAGAAGATCAGAGATCATACGAGACAGAACACAAAGAGGAATCGAGAAACCAGAGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AACGAAGAAGATCAGAGATCATACGAGACAGAACACAAAGAGGAATCGAGAAACCAGAGC 305
Query 301 CACCAAATTTCGAAATCGGTTGGAAAAGAACAAAAGAGATAAACTTGGAGAAACCTAAAG 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CACCAAACTTCGAAATCGGTTGGAAAAGAACAAAAGAGATAAACTTGGAGAAACCTAAAG 365
Query 361 GTTATGTAATAATGGATTTCTTAGAAAAGTTCGAAGCTTTAATGTCGAGAGAGTTTGGAT 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 366 GTTATGTAATAATGGATTTCTTAGAAAAGTTCGAAGCTTTAATGGCGAGAGAGTTTGGAT 425
Query 421 CAAAGGAGCTTTTAGCTAAAGCAGGTGAGATTGTTGCtgagagagctagagaagaagctg 480
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 426 CAAAGGAGCTTTTAGCTAAAGCTGGTGAGATTGTTGCAGAGAGAGCTAGAGAAGAAGCTG 485
Query 481 aggttttgagagatgaaggtaaagttgaagagagaaTGGTCACTGAGCTTTTTAGGGTTT 540
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 486 AGGTTTTGAGAGATGAAGGTAAAGTTGAAGAGAGAATGGTTACAGAGCTTTTTAGGGTTT 545
Query 541 TGAAATTGATGGAGATGGATTTAGCTATGGTTAAAGCTTCTGTTAAAGATGAAACTTTGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 TGAAATTGATGGAGATGGATTTAGCTATGGTTAAAGCTTCTGTTAAAGATGAAACTTTGA 605
Query 601 GTCAGAGGATTGAACAAGCTAGAGCTCGGTGTAGACAAGCTATACTTGTTGCTAAttctt 660
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 606 GTCAGAGGATTGAACAAGCTAGAGCTCGGTGTCGACAAGCTATTCTTGTTGCTAATTCTT 665
Query 661 tctaattccttcttcttcttcttGCAAATTGAGTCAAAAGTCTATGAATTT-GTTTATAG 719
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 666 TCTAATTCCTTCTTCTTCTACTTGCAAATTGAGTCAAAAGTCTATGAATTTTGTTTATAG 725
Query 720 TTTTACACAAAACAGAGCTTCAACATCTGTAAAAGATCTTATTTTTT-GGTTCTGTAATC 778
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 726 TTTTACACAAAACAGAGCTTCTTCATCTGTAAAAGATCTTATTTTTTTGGTTCTGTAATC 785
Query 779 ATCTCTGGATCATTCATCTGTTACTTCAATGGTAGAAGAAGGATTAAAGATGAGGGAATG 838
|||||||||||||||||||||||||| |||||||||||||||||| |||||||| | |
Sbjct 786 ATCTCTGGATCATTCATCTGTTACTTTAATGGTAGAAGAAGGATTGAAGATGAG--A--G 841
Query 839 TGAAGAATCATGTGAAGAATCAAAACAAAGATTCATGCTTTTGGTTTTGC 888
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TC-----TCATGTGAAGAATCAAAACAAAGATTCATGCTTTTGGTTTTGC 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5