BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474227
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51120.1 | Symbols: | AP2/B3 transcription factor family pr... 1615 0.0
AT1G50680.1 | Symbols: | AP2/B3 transcription factor family pr... 1033 0.0
> AT1G51120.1 | Symbols: | AP2/B3 transcription factor family
protein | chr1:18938091-18939149 FORWARD LENGTH=1059
Length=1059
Score = 1615 bits (874), Expect = 0.0
Identities = 1002/1064 (94%), Gaps = 7/1064 (1%)
Strand=Plus/Plus
Query 1 ATGGACAAGATGAGCTATGAAGCCAAGACAACGACAGAGACTTCAGGCTCAAGTGACTCT 60
|||||| |||||||| ||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 1 ATGGACGAGATGAGCAATGTAGCCAAGACAACGACAGAGACTTCAGGCTTAACTGACTCT 60
Query 61 GTCTTGCA-CATCACGAAACGCATGAAACCTACTTTGGTTACGACGACGACCATAAAACC 119
|||||| | | ||||||||||||||||||||||| ||||||||| | |||| ||||||
Sbjct 61 GTCTTG-AGCCTCACGAAACGCATGAAACCTACTGAGGTTACGAC--C-ACCACAAAACC 116
Query 120 TGCCTTGTCCAACACGACGAAATACAAAGGAGTGGTTCAGCAGCAGAACGGTCATTGGGG 179
||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 117 TGCCTTGTCCAACACGACGAAATTCAAAGGAGTTGTTCAGCAACAGAACGGTCATTGGGG 176
Query 180 TGCTCAGATTTACGCAGAACA-CAAACGGATTTGGCTTGGAACTTTCAAATCCGCTCCTG 238
|||||||||||||||||| || | || |||||||||||||||||||||||||||||| ||
Sbjct 177 TGCTCAGATTTACGCAGACCATCGAA-GGATTTGGCTTGGAACTTTCAAATCCGCTCATG 235
Query 239 AAGCCGCTGCGGCTTACGATAGCGCATCGATTAAGCTTCGAAGCTTTGACGCTAACTCGC 298
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 236 AAGCCGCTGCTGCTTACGATAGCGCATCGATTAAGCTTCGAAGCTTTGATGCTAACTCGC 295
Query 299 ACAGGAACTTCCCTTGGTCTGATTTTACGGTTCATGAACCGGACTTTCAAGAGTGCTACT 358
|| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 296 ACCGGAACTTCCCTTGGTCTGATTTTACCCTCCATGAACCGGACTTTCAAGAGTGCTACA 355
Query 359 CAACAGAAGCTGTGTTGAACATGATCAGAGACGGTTCTTACCAGCACAAGTTCAGAGATT 418
| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 356 CGACAGAAGCTGTGTTGAACATGATCAGAGACGGTTCTTATCAACACAAGTTCAGAGATT 415
Query 419 TTCTTAGAATCCGGTCTCAGATTGTCGCTAACATCAACATCGTTGGTTCAAAACAAGTCC 478
|||| |||||||||||||||||||| || || ||||||||||| || ||||||||||||
Sbjct 416 TTCTCAGAATCCGGTCTCAGATTGTTGCGAATATCAACATCGTGGGATCAAAACAAGTCT 475
Query 479 GAGGAGGAGAAGGAGGAGCTCAAGAATCGAACAAGTGTTTCTCGTGCACACAGCTTTTTC 538
|||||||| || ||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 476 TAGGAGGAGGAGAAGGTGGTCAAGAATCGAACAAGTGTTTCTCGTGCACGCAGCTTTTTC 535
Query 539 AGAAGGAACTGACACCGAGCGATGTAGGGAAACTGAATAGGCTTGTGATACCTAAGAAGT 598
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGAAAGAACTGACACCGAGCGATGTAGGGAAACTGAATAGGCTTGTGATACCTAAGAAGT 595
Query 599 ATGCAGTGAAGTATATGCCTTTCATTAGCGATGATCAAAGCGAGAAAGAGACGAGTGAAG 658
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 596 ATGCAGTGAAGTATATGCCTTTCATAAGCGATGATCAAAGCGAGAAAGAGACGAGTGAAG 655
Query 659 GAGTAGAAGATGTGGAGGTTGTGTTTTATGACAGAGCAATGAGACAATGGAAGTTTAGGT 718
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 656 GAGTAGAAGATGTGGAGGTTGTCTTTTACGACAGAGCAATGAGACAATGGAAGTTTAGGT 715
Query 719 ATTGTTACTGGAGAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATGGTTTCGTGA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATTGTTACTGGAGAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATGGTTTCGTGA 775
Query 779 AGGAGAAGAATCTCAAGGAGAAAGATATTATTGTCTTTTACACTTGCGATGTCCCCAGCA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 776 AGGAGAAGAATCTCAAGGAGAAAGATATTATTGTCTTTTACACTTGCGATGTCCCCAACA 835
Query 839 ATGTGAAGACATTAGAAGGCCAAAGCAAGAACTTCTTGATGATTGATGTTCATTACTTTT 898
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 836 ATGTGAAGACATTAGAAGGCCAAAGCAAGACCTTCTTGATGATTGATGTTCATCACTTTT 895
Query 899 CAGGCAACGGTTTCAACCTTCCCGAGGAAGTAAACAAGACGGTTCACGAGAGTTCTGATG 958
|||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 896 CAGGCAACGGTTTCGTGGTTCCCGAGGAAGTAAACAAGACGGTTCATGAGATTTCTGATG 955
Query 959 AAGAAATGAAAACAGAAACCCTCTTTAGCTCGAAGTTAGAAGAAGAAACCAAATCAGAGG 1018
|||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 956 AAGAGATGAAAACAGAAACCCTCTTTACCTCGAAGGTAGAAGAAGAAACCAAATCAGAGG 1015
Query 1019 AGAAGAAAGGAGGGTTTATGTTGTTTGGTGTTAGGATCCAATAG 1062
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1016 AGAAGAAAGGAGGGTTTATGCTGTTTGGTGTTAGGATCCAATAG 1059
> AT1G50680.1 | Symbols: | AP2/B3 transcription factor family
protein | chr1:18777601-18778614 REVERSE LENGTH=1014
Length=1014
Score = 1033 bits (559), Expect = 0.0
Identities = 818/939 (87%), Gaps = 34/939 (4%)
Strand=Plus/Plus
Query 142 TACAAAGGAGTGGTTCAGCAGCAGAACGGTCATTGGGGTGCTCAGATTTACGCAGAACAC 201
||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 82 TACAAAGGAGTCGTTCAGCAACAGAACGGTCATTGGGGTGCCCAGATTTACGCAGACCAC 141
Query 202 AAACGGATTTGGCTTGGAACTTTCAAATCCGCTCCTGAAGCCGCTGCGGCTTACGATAGC 261
||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 142 AAAAGGATTTGGCTTGGAACTTTCAAATCCGCTGATGAAGCCGCCACGGCTTACGATAGT 201
Query 262 GCATCGATTAAGCTTCGAAGCTTTGACGCTAACTCGCACAGGAACTTCCCTTGGTCTGA- 320
||||| || || || |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 202 GCATCTATCAAACTCCGAAGCTTTGACGCTAACTCGCACCGGAACTTCCCTTGGTCT-AC 260
Query 321 TTTTACGGT-TC-ATGAACCGGACTTTCAAGAGTGCTACTCAACAGAAG-CTGTGTTGAA 377
| || | || | ||||| ||||||||| | |||||| |||||| || ||||||||||
Sbjct 261 AATCAC--TCTCAACGAACCAGACTTTCAAAATTGCTACACAACAG-AGACTGTGTTGAA 317
Query 378 CATGATCAGAGACGGTTCTTACCAGCACAAGTTCAGAGATTTTCTTAGAATCCGGTCTCA 437
|||||||||||||||||| ||||| ||||| |||||||||||||| |||||| | |||||
Sbjct 318 CATGATCAGAGACGGTTCGTACCAACACAAATTCAGAGATTTTCTCAGAATCAGATCTCA 377
Query 438 GATTGTCGCTAACATCAACATCGTTGGTTCAAAACAAGTCCGAGGAGGAGAAGGAGGAGC 497
|||||| || | |||||||||| || ||||||||| || |||||||| | ||
Sbjct 378 GATTGTTGCGAGTATCAACATCGGGGGACCAAAACAAG-CC--CGAGGAGAA-G-TGA-A 431
Query 498 TCAAGAATCGA-ACAAGTGTTTCTCGTGCACACAGCTTTTTCAGAAGGAACTGACACCGA 556
||||||||| | |||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct 432 TCAAGAATC-AGACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGAATTGACACCGA 490
Query 557 GCGATGTAGGGAAACTGAATAGGCTTGTGATACCTAAGAAGTATGCAGTGAAGTATATGC 616
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 491 GCGATGTAGGGAAACTAAATAGGCTTGTGATACCTAAAAAGTATGCAGTGAAGTATATGC 550
Query 617 CTTTCATTAGCGATGATCAAAGCGAGAAAG-AGACGAGTG----A--AGGA---GTAGAA 666
||||||| |||| ||||||||||||||||| ||| | ||| | |||| || |||
Sbjct 551 CTTTCATAAGCGCTGATCAAAGCGAGAAAGAAGA-GGGTGAAATAGTAGGATCTGTGGAA 609
Query 667 GATGTGGAGGTTGTGTTTTATGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTAC 726
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 610 GATGTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTAC 669
Query 727 TGGAGAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATGGTTTCGTGAAGGAGAAG 786
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 670 TGGAAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATAGTTTCGTGAAGGAGAAG 729
Query 787 AATCTCAAGGAGAAAGATATTATTGTCTTTTACACTTGCGATGTCCCCAGCAATGTGAAG 846
|||||||||||||| ||| |||||| ||| ||||||||||||||||| | ||||||||||
Sbjct 730 AATCTCAAGGAGAAGGATGTTATTGCCTTCTACACTTGCGATGTCCCGAACAATGTGAAG 789
Query 847 ACATTAGAAGGCCAAAGCAAGAACTTCTTGATGATTGATGTTCATTACTTTTCAGGCAAC 906
||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||| ||||
Sbjct 790 ACATTAGAAGGTCAAAGAAAGAACTTCTTGATGATCGATGTTCATTGCTTTTCAGACAAC 849
Query 907 GGTTTCAACCTTCCCGAGGAAGTAAACAAGACGGTTCACGAGAGTTCTGATG-AAG-AAA 964
|||| | | | |||||||||| | ||||||||| || ||||| | || ||| |||
Sbjct 850 GGTTCCGTGGTAGCTGAGGAAGTAAGTATGACGGTTCATGACAGTTCAG-TGCAAGTAAA 908
Query 965 TGAAAACAGAAACCCTCTTTAGCTCGAAGTTAGAAGA-A--GAAACCAAATCAGAGGAGA 1021
||||||||||| | | ||||||| | ||||||||| | |||||||||||||||||||
Sbjct 909 -GAAAACAGAAAACTTGGTTAGCTCCATGTTAGAAGATAAAGAAACCAAATCAGAGGAGA 967
Query 1022 AGAAAGGAGGGTTTATGTTGTTTGGTGTTAGGATCCAAT 1060
| ||||||||||||||| |||||||||| |||||| |||
Sbjct 968 ACAAAGGAGGGTTTATGCTGTTTGGTGTAAGGATCGAAT 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5