BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474228
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51130.1 | Symbols: | Nse4, component of Smc5/6 DNA repair ... 2004 0.0
> AT1G51130.1 | Symbols: | Nse4, component of Smc5/6 DNA repair
complex | chr1:18939277-18941704 REVERSE LENGTH=1559
Length=1559
Score = 2004 bits (1085), Expect = 0.0
Identities = 1440/1599 (90%), Gaps = 73/1599 (5%)
Strand=Plus/Plus
Query 1 AATTTTCTCTTTCTTCC-TTTTTCCCTC----a-a--aaaaaTCCCCAAATTCAATCTGC 52
||||||||||||||||| |||||||||| | | |||||||||||||||||| ||||
Sbjct 1 AATTTTCTCTTTCTTCCTTTTTTCCCTCAAAAATATCAAAAATCCCCAAATTCAACCTGC 60
Query 53 CGTTAGGGTTTTCAATttcttccacttcttcttcttcgtttcgcttcttctACATCTCTC 112
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct 61 CGTTAGGGTTTTCAATTTC-TCCACTTCTTCTTCTTCGTTTCGCTTCTTCAACGTCTCTC 119
Query 113 CTTGTTCGATAATTCTGGAA-TCATCATGAGGAAGACGGTGAAGCGAGAACCAGAAGTCC 171
||||||||| | |||| || ||| ||||||||||||||||||||||||| | ||||
Sbjct 120 CTTGTTCGACAGTTCT-AAATTCACCATGAGGAAGACGGTGAAGCGAGAATCGGAAG--- 175
Query 172 CCGGTGGCAGCGGCGGCAAAAGAGAAGCAGACGAAGAGCCGGAGCGGTTGAGGTCTGTGA 231
| || |||||| ||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct 176 -C-----CACCGGCGGGAAAAGAGAAGCCGACGACGAGCCGGAGAAGTTGAGGTCTGTGA 229
Query 232 AGAAGGAGAAACAGAGAAAAACCGGAGCTGACTTCGTACGACCCGACGAGCCTCCTCCGA 291
|||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 230 AGAAAGAGAAACAGAGAAAAACCGAAGCTGACTCCGTACGACCCGACGAGCCTCCTCCGC 289
Query 292 GTGAGGAGGAAGAACAAGGAATTTCTGATCGGAGAATTCTCAGATCTAAGTATCTCTCTC 351
| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 290 CTCAGGAGGAAGAACAAGGAATATCTGATCGGAGAATTCTCAGATCCAAGTATCTCTCTC 349
Query 352 TTCAAAACGAAATCAGCGATTCTAAAGATGATTTGATGAAGATTGATTCTGACAAATTCT 411
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 350 TTCAAAACGAAATCAACGATTGTAAAGATGATTTGATGAAGATTGATTCTGACAAATTCT 409
Query 412 CCAGAATTTTTAATGAAGTTGAAAACTTGCACAAACAGGTGCGAAAGCCTAGGGAACAAA 471
|||||||| |||||| |||||||||||||||| |||| || || ||||||||||||||||
Sbjct 410 CCAGAATTATTAATGCAGTTGAAAACTTGCACCAACAAGTTCGGAAGCCTAGGGAACAAA 469
Query 472 TTGCAGACGCAGAGGCACTTCTGGATATAGCAAACACCGTAATGTCATCGGTGAAGTCTC 531
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 470 TTGCAGACGCAGAGGCACTTCTGGATATAGCAAACACTTTAATGTCATCGGTGAAGTCTC 529
Query 532 AGTCTGCTCATGGTGTTTCTCCGGCTGAGTTTGTTAATGCTTTGGTCAGTGGGTTTGGTC 591
||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 530 AGTCTGCTCATGGGGTTTCACCGGCTGAGTTTGTTAATGCTTTGATCAGTGGGTTTGGTC 589
Query 592 AAGGTTCTTTGGGAATTGATGCTGATGAAACTGCCCAAGTATCTTTAAAGTGGAAGGATC 651
||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 590 AAGGTTCTTTGGGGATTGATACTGATGAAACTGCTCAAGTATCTTTAAAGTGGAAGGATC 649
Query 652 TTGGGTTTGCTGTCTGTTCTACTGTTTTAGTATCATGTGGTTGTTCCACAATGTTGGGAC 711
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 650 TTGGGTTTGCTGTTTGTTCTACTGTTTTAGTATCATGTGGTTGTTCTACAATGTTGGGAC 709
Query 712 CTATGGATACTGAACTGAAGCAAAGGAAAAGGGCACCCAACAGAAAACGTACAAAGCCTG 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 CTATGGATACTGAACTGAAGCAAAGGAAAAGGGCACCCAACAGAAAACGTACAAAGCCTG 769
Query 772 GTGAAGGCGTTCGTCCAGATGAGGTAGATGATTCACAATCAGAAGAGAAAACTGATACAG 831
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 770 GTGAAGGTGTTCGTCCAGATGAGGTAGATGATTCACAATCAGAAGAAAAAACTGATACAG 829
Query 832 ACAAGAATATGGCAATAATGTTTACCATCTTGGGGAAAAAGAGGCGCGTGCGGCTTGAGA 891
||||||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 830 ACAAGAATATGACAATAATGTTTAACATCTTGGGGAAAAAGAAGCGCGTGCAGCTTGAGA 889
Query 892 ATTTGGTGCTCAATAGGCGGTCATTTGCACAGACTGTAGAGAATCTGTTTGCGCTATCTT 951
||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 890 ATTTGGTGCTCAACAGGCGGTCATTTGCACAGACTGTAGAGAATTTGTTTGCTCTATCTT 949
Query 952 TCTTGGCCAAAGATGGACGAGTTGAGATCATTGTCGATAAAAGTGGTTCTCATTTCGCCT 1011
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 950 TCTTGGCCAAAGATGGACGAGTTGAGATCATTGTCGACAAAAGTGGTTCTCATTTCGCCA 1009
Query 1012 TACCGAGAAATGGACCTGATGCAAACCTGGTGATGTCGGGTGAAGTCATTTATAACCATT 1071
| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1010 TGCCGAGAAATGCACCTGATGCAAACGTGGTGATGTCGGGTGAAGTCATTTATAACCATT 1069
Query 1072 TTGTGTTTAGATTAGATTTCAAAGATTGGAAGTTGATGTCTGAAATGGTGCCACTGGACC 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1070 TTGTGTTTAGATTAGATTTCAAAGATTGGAAGTTGATGTCTGAAATGGTGCCACTGGGCG 1129
Query 1132 AGGAGTTAATGCCACACAGAGAAACTGCAGTCGCTTCATCTTCTTGTCCTGCTGCA---G 1188
||||| |||||||||||||| |||||||||| ||||||||||||||||| |||||| |
Sbjct 1130 AGGAGCTAATGCCACACAGACAAACTGCAGTTGCTTCATCTTCTTGTCCCGCTGCATCAG 1189
Query 1189 C------A---GCAGATTTCACACAAGATACTCAGACAACACCGATAAGAAAACTGTCGA 1239
| | ||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1190 CCCCTGCATCAGCAGACTTCACACAAGATACTCAGACAACACCAATAAGAAAACTATCGA 1249
Query 1240 GAAACCGAGGTTTGGTTGTACAAGAAGAAACTGTTGTAGAAGAAGAAACTGTTGTAGAAG 1299
|||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 1250 GAAACCGAGGGTTGGTTGTACAAGAAGAAACTGTTGTAGAAGA------T-----A---- 1294
Query 1300 ATACTCCTGACACCA-AGGGCGATGGAACTCGAAGGAGATGTAAGCGGAAACTCACCTAG 1358
||||||||| | |||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1295 ---CTCCTGACAA-AGAGGGCGATGGGACTCGAAGGAGATGTAAGCGGAGACTCACCTCT 1350
Query 1359 TCTTAAGGAGTGTATAGAGAGAGTAGTGAGTTGAAACTCTTGTATCTGTTTCATTTTGTG 1418
||||||||||||||||||||||| ||||||||| | ||| || | | |||||||||
Sbjct 1351 TCTTAAGGAGTGTATAGAGAGAGAAGTGAGTTGTA--TCT---AT-T-T--CATTTTGTG 1401
Query 1419 ACATTAGCTTAATGTCTTCACTAGGATTGTTTTGTTCATGGTAGGTTT-TACCAGTTAAG 1477
|||||| || |||||||| ||||||||||| |||| | |||| ||| || ||||||||
Sbjct 1402 ACATTAACTAAATGTCTTTGTTAGGATTGTTTAGTTCGTTGTAG-TTTGTAGCAGTTAAG 1460
Query 1478 TGGCTTT-GTCTTAACTCTTAAAAGAAGCC-A-TT-AAAGCCTCTTT-GGCTTTTCTTCT 1532
||||||| |||||||||||||||||||| | || ||||||||||| || |||||||||
Sbjct 1461 TGGCTTTTGTCTTAACTCTTAAAAGAAGAAGAATTTAAAGCCTCTTTTGGTTTTTCTTCT 1520
Query 1533 TCTTTTTA-----ATCTACTCAAGAGAGACATTTTATCT 1566
||||||| |||||||||||||||||| |||||||
Sbjct 1521 TCTTTTTTTTTTGATCTACTCAAGAGAGACAATTTATCT 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77308839300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5