BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474229
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2302 0.0
> AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:18943457-18945753 REVERSE
LENGTH=1625
Length=1625
Score = 2302 bits (1246), Expect = 0.0
Identities = 1527/1653 (92%), Gaps = 58/1653 (4%)
Strand=Plus/Plus
Query 1 AAGTTTCTCTCACGTTCTCttttttaattttattttCTCGCCGGATA-AATCCTCCTCTC 59
|||||||||||||||||||||||||||||||| |||||||||||| | ||| ||| ||||
Sbjct 1 AAGTTTCTCTCACGTTCTCTTTTTTAATTTTAATTTCTCGCCGGAAACAAT-CTCATCTC 59
Query 60 CCGGCGAACGAAACGTCC-G-GTGGTACT-CTAAACGGAGaaaaaaaaaTAACAAAAGAA 116
|||||||||||||| ||| | |||||||| | |||||||| ||||||||||| ||||||
Sbjct 60 CCGGCGAACGAAACTTCCGGTGTGGTACTGC-AAACGGAG--AAAAAAATAACCAAAGAA 116
Query 117 GAGAGAAACTCAAAAGCTACAAAGATGGAATCAGAATTTCAGCAACATCACTTTCTTCTC 176
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 117 GAGAGAAACTCAAAAGCTACTAAGATGGAATCAGAATTCCAGCAACATCACTTCCTTCTC 176
Query 177 CACGATCATCAACATCAAAGACCTAGAAACTCAGGATTGATTCGTTACCAATCAGCACCA 236
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 177 CACGATCATCAACACCAGAGACCAAGAAACTCAGGATTGATTCGTTACCAATCAGCACCA 236
Query 237 AGTTCGTATTTTTCGAGTTTCGGTGAATCAATCGAAGAGTTTTTAGATCGACCCACGAGT 296
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 237 AGTTCGTACTTTTCGAGTTTCGGTGAATCAATCGAAGAGTTTTTAGATCGACCCACAAGT 296
Query 297 CCTGAAACAGAGCGAATCTTATCTGGGTTTTTACAAACCACCGACACAAGCAATAACGTT 356
|||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 297 CCTGAAACTGAGCGAATCTTATCTGGCTTTTTACAAACCACCGACACAAGCGACAACGTT 356
Query 357 GATAGTTTCCTTCACCATACTTTTAACAGTGATGGAACAGAGAAGAAACCTCCGGAAGTG 416
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 357 GATAGTTTCCTTCACCATACTTTTAACAGTGATGGAACTGAGAAGAAACCTCCGGAAGTT 416
Query 417 AAAACAGAGGAGGAAGATACAGAGATTCCGGTGACT------GTGACGGCGATGGA-G-- 467
||||||||||| |||||| | || |||||||||||| | |||||||||||| |
Sbjct 417 AAAACAGAGGACGAAGATGCTGAAATTCCGGTGACTGCGACGGCGACGGCGATGGAGGTT 476
Query 468 GTTGTTTCCGGTGA----G--ATTTCAGTGAATCCTCAAGAATCGATTGGGTATGTAGCT 521
|||||||||||||| | || |||||||||||| ||| ||||||||||||||| |||
Sbjct 477 GTTGTTTCCGGTGATGGTGAAATCTCAGTGAATCCTGAAGTATCGATTGGGTATGTGGCT 536
Query 522 TCGGTTTCGAGGAATTTAGGTCAGAATAAGAGACCAAGAGAGAAAGATGATCGGACTCCG 581
|||||||| | | | |||||||||||||||||||||||||||||||||||||
Sbjct 537 TCGGTTTC---G-----A-G---GAATAAGAGACCAAGAGAGAAAGATGATCGGACTCCG 584
Query 582 GTGAATAATCTAGCTCGTCATAATAGTTCACCGGCCGGATTATTTTCCTCCATTGATGTT 641
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 585 GTGAATAATCTAGCTCGTCATAATAGTTCACCGGCCGGATTATTTTCATCCATTGATGTT 644
Query 642 GAAACAGCTTATGCAGCTGTAATGAAAAGTATGGGAGGTTTTGGAGGAAGTAATGTGGTG 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 645 GAAACAGCTTATGCAGCTGTAATGAAAAGTATGGGAGGTTTTGGAGGAAGTAATGTGATG 704
Query 702 AGTACAAGCAATAATGAAGCTTCGTCTCTTACTCCTAGAAGCAAGTTACTTCCTCCTACT 761
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AGTACAAGCAATACTGAAGCTTCGTCTCTTACTCCTAGAAGCAAGTTACTTCCTCCTACT 764
Query 762 TCTAGAGCGATGAGTCCGATATCTGAGGTTGATGTTAAGCCCGGGTTT-TCGGCTAGATT 820
|||||||||||||||||||| ||||||||||||||||| ||||| ||| ||| |||||||
Sbjct 765 TCTAGAGCGATGAGTCCGATCTCTGAGGTTGATGTTAAACCCGG-TTTCTCGTCTAGATT 823
Query 821 GCCTCCTCGGACACTTTCCGGTGGGTTTAATCGTTCGTTTGGGAATGAAGGGTCTGCTTC 880
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 824 GCCTCCTCGGACGCTTTCCGGTGGGTTTAATCGTTCTTTTGGGAATGAAGGGTCTGCTTC 883
Query 881 GTCTAAGCTTACTGCTATTGCAAGGACTCAATCTGGAGGTCTAGATCAATACAAAACCAA 940
|| |||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 884 TTCCAAGCTTACAGCTCTTGCTAGGACCCAATCTGGAGGTCTAGATCAATACAAAACCAA 943
Query 941 GGAAGAGGATTCAGCAAGTAGACGTCCCCCTTTGGCACATCACATGAGTTTGCCCAAGTC 1000
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 944 GGATGAGGATTCAGCAAGTAGACGTCCTCCTTTGGCACATCACATGAGTTTGCCCAAGTC 1003
Query 1001 TTTATCAGATATTGAACAGTTACTGTCAGATTCTATCCCCTGTAAGATCAGAGCCAAGCG 1060
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1004 TTTATCAGATATTGAACAGTTACTGTCAGATTCTATCCCATGTAAGATCAGAGCCAAGCG 1063
Query 1061 GGGTTGTGCAACTCATCCTCGCAGCATCGCCGAGAGGGTGAGAAGAACCAAGATCAGTGA 1120
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1064 GGGTTGTGCAACTCATCCTCGAAGCATAGCCGAGAGGGTGAGAAGAACCAAGATCAGTGA 1123
Query 1121 AAGGATGAGGAAGCTGCAAGACCTTGTTCCAAACATGGACACGCAAACAAACACAGCAGA 1180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 AAGAATGAGGAAGCTGCAAGACCTTGTTCCAAACATGGACACGCAAACAAACACAGCAGA 1183
Query 1181 CATGTTGGATCTTGCGGTTCAGTACATCAAGGACCTGCAAGAACAAGTGAAGACGCTCGA 1240
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1184 CATGTTGGATCTTGCGGTTCAATACATCAAGGACCTGCAAGAACAAGTGAAGGCGCTCGA 1243
Query 1241 AGAGACTCGGGCAAGATGTAGATGCTCTAGTGCGTGAAACTAGAAGTTGGAGTATGCGAG 1300
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1244 AGAGAGTCGGGCAAGATGTAGATGCTCTAGTGCGTGAAACTAGAAGTGGGAGTATGCGCG 1303
Query 1301 AGTGCTAGCCAGGGAGGGATTTGTGCATAGAAGTATCGATCGATTCAGCCTTTGGAGAAA 1360
||||||||||||||||||| |||||||||||||||||| | ||| |||||||||||||
Sbjct 1304 AGTGCTAGCCAGGGAGGGAGTTGTGCATAGAAGTATCG---G-TTCGGCCTTTGGAGAAA 1359
Query 1361 AAGTCGAAGATAGCAAAGTAGAGAAGAGATCATGAATAGAGCTAAAATTGGTGGATGATG 1420
| |||||||||||||||||||||||||||||||||| | ||||||| ||||||| || ||
Sbjct 1360 A-GTCGAAGATAGCAAAGTAGAGAAGAGATCATGAACAAAGCTAAATTTGGTGG-TGGTG 1417
Query 1421 GTGAAAAGGGTTTA-GTAAAGTTGGAACCtttttttGGTAGGGAAGAAAGTA--A-GTTT 1476
||||||||||||| ||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1418 GTGAAAAGGGTTTTTGTAAAGTTGGAACCTTTTTTTGGTAGGGAAGAAAGTAGCAAGGTT 1477
Query 1477 GTGTAATGGTCCGAACTCCAAAGCTATTGTATGTTGTTCTTACACCCAAAGAAAA-AT-- 1533
||||||||||||||||||||| ||||||||||||| |||||| ||||| |||| |
Sbjct 1478 GTGTAATGGTCCGAACTCCAATGCTATTGTATGTT---CTTACATCCAAAAAAAAGAAAA 1534
Query 1534 GCAGAACAGAAGTGATGTACAATGAGAAGCTTCTTTTATTGTTGTAACTCAAGAAATAAT 1593
|||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 1535 GCAGAAGAGAAGTGATGTACAATGAGAAGCTTATTTTATTGT---AACTCAAGAA-TAAT 1590
Query 1594 TCAGGGTAATTAGTTTATTTTCTTTTGTTGGAA 1626
||||| ||||||||||||||||||||||| |||
Sbjct 1591 TCAGG-TAATTAGTTTATTTTCTTTTGTTAGAA 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5