BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474232
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51170.1 | Symbols: | Protein kinase superfamily protein | ... 2028 0.0
AT3G20830.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent a... 403 2e-111
AT3G25250.1 | Symbols: AGC2-1, AGC2, OXI1, AtOXI1 | AGC (cAMP-d... 91.6 2e-17
> AT1G51170.1 | Symbols: | Protein kinase superfamily protein
| chr1:18953458-18954892 REVERSE LENGTH=1435
Length=1435
Score = 2028 bits (1098), Expect = 0.0
Identities = 1290/1379 (94%), Gaps = 27/1379 (2%)
Strand=Plus/Plus
Query 1 AACGTTTGAGACCCACTCGTCTCCTTCCTTTTTATCTATCTC-TT-TCT--C-ATGGAGA 55
||||||| |||||||||||||||||||||| | |||| |||| || ||| | |||||||
Sbjct 1 AACGTTTCAGACCCACTCGTCTCCTTCCTTCTCATCTCTCTCTTTCTCTCACAATGGAGA 60
Query 56 CACGACCATC--C-TCATCTTCTCTTACACCCGCGACGAATCTTAACCTCGACAGACTCA 112
|| ||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 61 CAAGACCATCATCATCATCTTCTCTTTCACCGGCGACGAATCTTAACCTCGACAGACTCA 120
Query 113 AAGTTCTAAAACTCCTCGGAAAAGGAGCCACCGGAACTGTCTTCCTCGTCCACGACTCTG 172
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 121 AAGTTCTCAAACTCCTCGGAAAAGGCGCCACCGGAACAGTCTTCCTCGTCCACGACTCTG 180
Query 173 TTTCCGACTCCTCTGTTTCTTCTCCCTTCGCTTTAAAACTCGTCGACAAATCCTCTGCCT 232
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 181 TTTCCGACTCCTCTGTTTCTTCTCCCTTTGCTTTAAAACTCGTCGACAAATCCTCCGCAT 240
Query 233 CTTCTCTCCGCCGTGCACGGTGGGAAATTCAGATCCTCCGACGTCTCTCCGATGACACAA 292
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCTCTCCGCCGTGCAAGGTGGGAAATTCAGATCCTCCGACGTCTCTCCGATGACACAA 300
Query 293 ACCAAAACCCATTTCTCCCAAAACTCTTAGCTTCCTCAGAATCCTCTGAATTCATCGCTT 352
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 301 ACCCAAACCCATTTCTCCCAAAACTCTTAGCTTCATCAGAATCCTCTGAATTCATCGCAT 360
Query 353 GGGCTTTACCTTACTGCTCCGGCGGCGATTTAAACGTCCTCCGTCACCGTCAAAACGACG 412
|||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||
Sbjct 361 GGGCTTTACCTTACTGCTCCGGTGGAGATTTAAACGTCCTCCGACAACGTCAAAACGACG 420
Query 413 GCGTTTTTAGCTCCTCCGTTATGAAATTCTACTTAGCTGAAATCGTCTGTGCGCTTGACC 472
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 GCGTTTTTAGCTCCTCCGTTATTAAATTCTACTTAGCTGAAATCGTCTGTGCGCTTGACC 480
Query 473 ACCTTCATACCATGGGGATCGCTTACAGAGACTTGAAACCTGAGAATATACTTCTTCAAG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACCTTCATACCATGGGGATCGCTTACAGAGACTTGAAACCTGAGAATATACTTCTTCAAG 540
Query 533 AATCGGGTCACGTGACTTTAACCGATTTTGATCTCGCTTGTAGTCTCAGTAAACCCACCC 592
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 541 AATCGGGTCACGTGACTTTAACCGATTTTGATCTCTCTTGTAGTCTCAATAAACCCACCC 600
Query 593 GACCCGATTT-T-T-ATCTATCCGACCTGGAGCCGGATCCGAACTCGGAATCGAAGCTCA 649
||||||| || | | |||||||||||| ||| |||||||||||| |||||||||| ||||
Sbjct 601 GACCCGAATTCTATCATCTATCCGACCCGGAACCGGATCCGAACCCGGAATCGAATCTCA 660
Query 650 GTCACAAGA-GAA--GTCTGAGAATTTTCCGGCAGAAGAAGAAGACGA--AA-TCAGCTC 703
|||| || | ||| |||||||||||||||||||||||||||||| || || |||||||
Sbjct 661 GTCATAATAAGAAAAGTCTGAGAATTTTCCGGCAGAAGAAGAAGAAGACGAAGTCAGCTC 720
Query 704 GTGTTAACCCGATTACACGACGGAGACTGAGTTTTTCCGGCGGTGAACGGTCGAATTCCT 763
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 721 GTGTTAACCCGATTACACGACGGAGACTGAGTTTTTCCGGCGGTGAACGGTCAAATTCGT 780
Query 764 TCGTCGGAACTGATGAGTATATATCGCCGGAGGTAATTCGCGGCGACGGTCACGATTTTG 823
| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 781 TTGTTGGGACTGATGAGTATATATCGCCGGAGGTAATTCGCGGCGACGGACACGATTTTG 840
Query 824 CCGTCGATTGGTGGGCTCTCGGAGTTTTAACGTACGAGATGATGTACGGAGAGACACCGT 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCGTCGATTGGTGGGCTCTCGGAGTTTTAACGTACGAGATGATGTACGGAGAGACACCGT 900
Query 884 TCAAAGGAAGAACCAAAAAAGAAACTTTTCGTAACGTGTTGATGAAGGAACCTGAATTCG 943
|||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 901 TCAAAGGAAGAAACAAAAAAGAAACTTTTCGTAACGTGCTGGTGAAGGAACCTGAATTCG 960
Query 944 CAGGAAAACCGTCGGATTTAACCGATTTGATCCGT-GGATTATTGGTGAAAGATCCGACG 1002
| || |||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 961 CCGGGAAACCGTCGGATTTAACCGATTTGATCCGTCGG-TTATTGGTTAAAGATCCGACG 1019
Query 1003 AAGCGGTTAGGTTACCGGCGAGGCGCGGCGGAGATAAAGGAGCATGCTTTTTTCAGGGGG 1062
|||||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1020 AAGCGGTTTGGTTTCTGGCGAGGCGCGGCGGAGATAAAGGAGCATGCTTTTTTCAAAGGA 1079
Query 1063 GTGAGGTGGGATTTCTTAACGGAAGTGTTAAGACCTCCGTTTATTCCGTTGAGAGATGAC 1122
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 GTGAGGTGGGAGTTGTTAACGGAAGTGTTGAGACCTCCGTTTATTCCGTTGAGAGATGAC 1139
Query 1123 GGAGAATTGACGGGAAAAGTAACGGCGGAAAGTGGGTTTGGTATAAAGGAATATTTCGAG 1182
||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1140 GGAGACTTGACGGGGAAAGTAACGGAGGAAAGTGGGTTTGGTATAAAGGAATATTTCGAG 1199
Query 1183 AAACTGAAAACGCTGCCGTTACCGTTACCGCACGAGTGTCCTGAAAACAATCCGTTTGTT 1242
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1200 AAACTGAAAACGCCGCCGTTACCGTTACCGCACGAGTGTTCTGAAAACAATCCGTTTGTT 1259
Query 1243 GATTTCTGATCCACGCGTGGGAGAATCTAACACACGTATAATAGTTTTATAGATTCTCtt 1302
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1260 GATTTCTGATCCACGCGTGGGAGAATCTATCACACGTATAATAGTTTTTTAGATTCTCTT 1319
Query 1303 ttttttttCTTTTCTTGTTCTGTTATTTAGCTTTTCTGATTTTGATGTGTATaaaaaaa 1361
|||||||| |||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1320 TTTTTTTTG----CTTGTTCTGTTA----GCTTTTCTGATTTTGATGTGTATAAACAAA 1370
> AT3G20830.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent
and protein kinase C) kinase family protein | chr3:7284963-7286260
REVERSE LENGTH=1298
Length=1298
Score = 403 bits (218), Expect = 2e-111
Identities = 384/462 (83%), Gaps = 20/462 (4%)
Strand=Plus/Plus
Query 684 GAAGAAGACGAA-ATCAGCTCGTGTTAACCCGATTACA-CGACGG-AGACTGAGTTTTTC 740
|||||| || || ||| ||||| |||||||| |||| | || ||| | || |||||| ||
Sbjct 661 GAAGAAAAC-AAGATCCGCTCGGGTTAACCCAATTA-ATCGCCGGAAAAC-GAGTTTCTC 717
Query 741 CGGCGGTGAACGGTCGAATTCCTTCGTCGGAACTGATGAGTATATATCGCCGGAGGTAAT 800
| ||||||||| || || || || || ||||| || ||||| | ||||||||||||||
Sbjct 718 CTCCGGTGAACGTTCTAACTCATTTGTTGGAACGGACGAGTACGTCTCGCCGGAGGTAAT 777
Query 801 TCGCGGCGACGGTCACGATTTTGCCGTCGATTGGTGGGCTCTCGGAGTTTTAACGTACGA 860
|||||||||||||||||| || |||||||||||||||||||| || ||||| || |||||
Sbjct 778 TCGCGGCGACGGTCACGACTTCGCCGTCGATTGGTGGGCTCTTGGCGTTTTGACATACGA 837
Query 861 GATGATGTACGGAGAGACACCGTTCAAAGG-AAGAACCAAAAAAGAAACTTTTCGTAACG 919
||||||||| |||||||| |||||||| || |||| | || || || |||||||||||||
Sbjct 838 GATGATGTATGGAGAGACGCCGTTCAAGGGTAAGAGC-AAGAAGGAGACTTTTCGTAACG 896
Query 920 TGTTGATGAAGGAACCTGAATTCGCAGGAAAACCGT-CGGATTTAACCGATTTGATCCGT 978
|||||||||||||||| || ||||| |||||||| || | | || |||||||||||
Sbjct 897 TGTTGATGAAGGAACCCGAGTTCGCCGGAAAACCCAACG-ACCTCACTGATTTGATCCGG 955
Query 979 -GGATTATTGGTGAAAGATCCGAC--GAAGCGGTTAGGTTACCGGCGAGGCGCGGCGGAG 1035
|| ||| ||||||| ||||||| |||| | ||||||| || || ||||||||||||
Sbjct 956 CGG-TTACTGGTGAAGGATCCGAATAGAAG-G-TTAGGTTGCCACCGTGGCGCGGCGGAG 1012
Query 1036 ATAAAGGAGCAT-GCTTTTTTCAGGGGG-GTGAGGTGGGATTTCTTAACGGAAGTGTTAA 1093
||||| |||| | ||||||||| | ||| |||||||||||||| |||||||| ||||||
Sbjct 1013 ATAAAAGAGC-TCGCTTTTTTC-GCGGGTGTGAGGTGGGATTTGTTAACGGAGGTGTTAC 1070
Query 1094 GACCTCCGTTTATTCCGTTGAGAGATGACGGAGAATTGACGG 1135
||||||||||||||||||| |||||||||||||| || ||||
Sbjct 1071 GACCTCCGTTTATTCCGTTAAGAGATGACGGAGAGTTAACGG 1112
Score = 390 bits (211), Expect = 2e-107
Identities = 421/521 (81%), Gaps = 20/521 (4%)
Strand=Plus/Plus
Query 110 TCAAAGTTCT-AAAACTCCTCGGAAAAGGAGCCACCGGAACTGTCTTCCTCGTC-CACGA 167
|||||| ||| |||| ||||||| ||||| ||||| || || |||||||||| | |||||
Sbjct 72 TCAAAGCTCTCAAAA-TCCTCGGTAAAGGCGCCACAGGTACCGTCTTCCTCG-CGCACGA 129
Query 168 C-TCTGTTTCCGA-CTCCTCTGT-TTCTTCTCCCTTCGCTTTAAAACTCGTCGACAAATC 224
| || |||| | | ||| ||| | ||||||||||||||| | || |||||| ||||||
Sbjct 130 CGTC-GTTT-CAACCTCTTCT-TCTTCTTCTCCCTTCGCGGTCAAGCTCGTCCCCAAATC 186
Query 225 CTCTGCCTCTTCTCTCCGCCGTGCACGGTGGGAAATTC-AGATCCTCCGACGTCTCTCCG 283
|||||| || ||||||||||||||||||||||||| || || ||||||| ||||||||||
Sbjct 187 CTCTGCTTCCTCTCTCCGCCGTGCACGGTGGGAAA-TCGAGGTCCTCCGTCGTCTCTCCG 245
Query 284 ATGACACAAACCAAAACCCATTTCTCCCAAAACTCTTAGCTTCCTCAGAATC-CTCTGAA 342
|||| | || |||||||| ||||| ||| ||||||||||| | || || | | |||
Sbjct 246 TTGACTCTAATCAAAACCCTTTTCTTCCACGTCTCTTAGCTTCTTTTGAGTCAC-CGGAA 304
Query 343 TTCATCGCTTGGGCTTTACCTTACTGCTCCGGCGGCGAT-TTAAACGTCCTCCGTCACCG 401
| | | |||||||| | ||||| || |||||||| ||| || || || || | ||| ||
Sbjct 305 TACTTTGCTTGGGCCGTCCCTTATTGTTCCGGCGGTGATCTT-AATGTACTTCTTCATCG 363
Query 402 TCAAAACGACGGCGTTTTTAGCTCCTCCGTTATGAAATTCTACTTAGCTGAAATCGTCTG 461
|||||||||||||||||| || ||||| ||||| | ||||||| | || || ||||||||
Sbjct 364 TCAAAACGACGGCGTTTTCAGTTCCTCTGTTATTAGATTCTACGTGGCGGAGATCGTCTG 423
Query 462 TGCGCTTGACCACCTTCATACCATGGGGATCGCTTACAGAGACTTGAAACCTGAGAATAT 521
||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 424 TGCGCTTGAGCATCTTCATACCATGGGGATCGCTTACAGAGACTTAAAACCAGAGAACAT 483
Query 522 ACTTCTTCAAG-AATCGGGTCACGTGACTTTAACCGATTTTGATCTCGCTTGTAGTCTCA 580
|| |||| | |||| |||||||| || |||||||||||||| || || | || || |
Sbjct 484 TCTGATTCA-GCAATCCGGTCACGTTACCTTAACCGATTTTGACCTTTCTCGGAGCCTTA 542
Query 581 GTAAACCCAC-CCGACCCGATTTTTATCTATCCGACCTGGA 620
|||||| | ||||||| |||| |||| | |||||| |||
Sbjct 543 AAAAACCC-CTCCGACCCCATTTCTATCAACCCGACCCGGA 582
> AT3G25250.1 | Symbols: AGC2-1, AGC2, OXI1, AtOXI1 | AGC (cAMP-dependent,
cGMP-dependent and protein kinase C) kinase family
protein | chr3:9195503-9197124 FORWARD LENGTH=1504
Length=1504
Score = 91.6 bits (49), Expect = 2e-17
Identities = 118/150 (79%), Gaps = 9/150 (6%)
Strand=Plus/Plus
Query 753 GTCGAATTCCTTCGTCGGAACTGATGAGTATATAT-CGCCGGAGGTAATTCGCGGCGACG 811
||| ||||| ||||||||||| || || || | | |||||||||| || |||| ||||
Sbjct 759 GTCAAATTCTTTCGTCGGAACAGAGGAATACGT-TGCGCCGGAGGTTATAAGCGGGGACG 817
Query 812 GTCACGATTTTGCCGTCGATTGGTGGGC-TCTCGGAGTT-TTA-ACGTACGAGATGATGT 868
|||||||||||||||||||||||||| | | | || ||| || | || |||||| |||
Sbjct 818 GTCACGATTTTGCCGTCGATTGGTGGTCGT-TAGGGGTTGTTTTA--TATGAGATGTTGT 874
Query 869 ACGGAGAGACACCGTTCAAAGGAA-GAACC 897
| |||| ||| ||||| | |||| |||||
Sbjct 875 ATGGAGCGACGCCGTTTAGAGGATCGAACC 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5