BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474234
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51200.1 | Symbols: | A20/AN1-like zinc finger family prote... 1476 0.0
> AT1G51200.1 | Symbols: | A20/AN1-like zinc finger family protein
| chr1:18984434-18986568 FORWARD LENGTH=1035
Length=1035
Score = 1476 bits (799), Expect = 0.0
Identities = 968/1044 (93%), Gaps = 33/1044 (3%)
Strand=Plus/Plus
Query 1 GTCGAGAGAAA-CaaaaaaaGAGCCTAAAAAGCCGACCTTTTTTCTTTCTTTCTCTCCTC 59
||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCGAGACAAACCAAAAAAA-AGCCTAAAAAGCCGACCTTTTTTCTTTCTTTCTCTCCTC 59
Query 60 TACCTCTCAGCTTCTGCTGGATCTCTCCAGCAGACACGATCTTGTTCGGAGAGATTCGTA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TACCTCTCAGCTTCTGCTGGATCTCTCCAGCAGACACGATCTTGTTCGGAGAGATTCGTA 119
Query 120 GGGGATCTATCAATCAAGGCTTCAAGGGCAGAAATGGTTCTAGAAATGGACCACGACAAG 179
||||| | ||| ||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 120 GGGGACCGATCTATCAAGGCTTCAAGGGC--AAA-----C-AGAAATGGACCACGACAAG 171
Query 180 ACAGGATGCCAAAGCCCACCTGAAGGTCCGAAGCTGTGTATC-AACAATTGCGGTTTCTT 238
||||||||||||||||||||||||||||| ||||| |||| | ||||| |||||||||||
Sbjct 172 ACAGGATGCCAAAGCCCACCTGAAGGTCCCAAGCTATGTA-CTAACAACTGCGGTTTCTT 230
Query 239 TGGAAGCGCTGCCACAATGAACATGTGTTCGAAGTGTCACAAGGATAAGTTATTTGAACA 298
|||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||
Sbjct 231 TGGAAGCGCTGCCACAATGAACATGTGTTCTAAGTGTCACAAGGATATGTTGTTCCAACA 290
Query 299 GAAACAGGGGGCTAAGTTTGCATCTGCAGTGTCTGGAACATCATCGTCCAGCAACCTCAT 358
| | ||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 291 GGAGCAGGGCGCTAAGTTTGCATCTGCAGTGTCTGGAACATCGTCATCCAGCAACATCAT 350
Query 359 AAAGGATACCATTACTGCTGCGTTGGTCGATGTTGAAACCAAATCCGTTGAGCCGATGAC 418
|||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 351 AAAGGAAACCTTTACCGCTGCGTTGGTCGATATTGAAACCAAATCCGTTGAGCCGATGAC 410
Query 419 TGTTTCTGTACAGCCATCCTCTGTCCAAGTCGTAGCAGAGGTAGTAGCACCAGAAGAAGC 478
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 411 TGTTTCTGTACAGCCATCCTCTGTCCAAGTCGTTGCAGAGGTAGTAGCACCAGAAGAAGC 470
Query 479 TGCAAAACCAAAGGGACCAAGCCGATGTACTACTTGCAATAAGCGGGTTGGCCTGACTGG 538
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGCGAAACCAAAGGGACCAAGCCGATGTACTACTTGCAATAAGCGGGTTGGCCTGACTGG 530
Query 539 ATTCAAATGTCGCTGTGGTAATCTCTTCTGCGGGACACACCGCTATGCAGACATACATGA 598
|||||||||||||||||| | ||||||||||| |||||||||||||||||| |||||||
Sbjct 531 ATTCAAATGTCGCTGTGGGAGCCTCTTCTGCGGAACACACCGCTATGCAGACGTACATGA 590
Query 599 CTGCTCCTTCAATTACCATGCTGCTGCGCAAGAAGCGATAGCTAAGGCAAACCCGGTTGT 658
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 591 CTGCTCCTTCAATTACCATGCTGCTGCGCAAGAGGCGATAGCTAAGGCAAACCCGGTTGT 650
Query 659 GAAAGCAGAGAAGCTTGACAAAATCTGAAATTCCAAGTAAACTTCTCTGATTTCATCAGG 718
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 651 GAAAGCAGAGAAGCTTGACAAAATCTGAAAATCTAAGTAAACTTCTCTGGTTTCATCAGG 710
Query 719 TACACC-GGTGTTTCCTTCCTCCTGTCTGTGTCTGGTTCAAGTATCTCTCATGTTAAAAA 777
| || |||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 711 TGG-CCTGGTGTTTCCTTC-TCCTGTCTGTGTCTGGTTCAAGTAT-TCTCATGTTAAAAA 767
Query 778 GGTTTTATATAAGGTCGAATGAAAGCGTGCTTGATCTTTAGCTTCTTCCGTCTCTCTGCA 837
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 768 GGTTTTATATAAGGTCGAATGAAAGCGTGCTTGATCTTTAGCGTCTTCCATCTCTCTG-- 825
Query 838 ATATTTGTGGTGTGAAACTTTTTATTATCTGTGTTTGCAAGCAGAGAAATGTGCTCTTaa 897
| ||| || ||| |||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 826 -TG---GTG-TG-GAA-CTTTCTATTATCTGTGTTTGCAAGCAGAGAAACGTGCTCTTAA 878
Query 898 aaaaaaaaTGCTTTGATGTGTTTTATCTTTCTTACTATTTTTGAGCACTGTGTTTAT-GT 956
|||||| ||||||| ||||||| |||||||| ||||||||||||||||||||| || ||
Sbjct 879 AAAAAA--TGCTTTG-TGTGTTT-ATCTTTCT-ACTATTTTTGAGCACTGTGTT-ATTGT 932
Query 957 TTCCCGTTTGGTCTGTATCATATTGAGATTGTCTCTGTAGCTACATTAAGCTTATTTAAA 1016
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 933 TTCCTGTTTGGTCTGTATCATATTGAGATTGTCTCTGTAGCTACATGAAGCTTATTTAAA 992
Query 1017 AAAGGCTTGTGTTTGTCCTTCAAT 1040
|| ||| |||||||||||||||||
Sbjct 993 AA-GGCCTGTGTTTGTCCTTCAAT 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50987659205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5