BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474240
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51260.1 | Symbols: LPAT3 | lysophosphatidyl acyltransferase... 2141 0.0
> AT1G51260.1 | Symbols: LPAT3 | lysophosphatidyl acyltransferase
3 | chr1:19003376-19005641 REVERSE LENGTH=1344
Length=1344
Score = 2141 bits (1159), Expect = 0.0
Identities = 1286/1348 (95%), Gaps = 6/1348 (0%)
Strand=Plus/Plus
Query 1 TTTCATTTCTCTAATCTCCCAAAAAGAATTTGAGAACAAAGATAACAGTCATCCTCTGTT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCAATTCTCTAATCTCCCAAAAAGAATTTGAGAACAAAGATAACAGTCATCCTCTGTT 60
Query 61 GGTGTCTTCTCCAACAATTTTTGGTATTGTCCTGTTGCTGCTTTGTGTTGTTCCTTCTCT 120
|||||||||| ||||||||||| |||| | ||||||||||||||||||||||||| |||
Sbjct 61 GGTGTCTTCTTCAACAATTTTTCATATTCTTCTGTTGCTGCTTTGTGTTGTTCCTTATCT 120
Query 121 CTCTCAGACATGAAGATCCCTGCGGCTCTTGCCTTTATCCCTGTTGGTGTCCTCTTCTTG 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CTCTCAGACATGAAGATCCCTGCGGCTCTTGTCTTTATCCCTGTTGGTGTCCTCTTCTTG 180
Query 181 ATCTCAGGGCTCATCGTCAACATCATTCAGCTTGTGTTCTTTATCATTGTTCGTCCATTC 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 ATCTCAGGGCTCATCGTCAACATCATTCAGCTTGTGTTCTTCATCATTGTTCGTCCATTC 240
Query 241 TCAAGAAGTTTGTATAGAAGAATCAACAAAAATGTTGCGGAATTACTTTGGTTGCAGCTC 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 TCAAGAAGTTTGTATAGAAGAATAAACAAAAATGTTGCGGAATTACTTTGGTTGCAGCTC 300
Query 301 ATATGGTTGTTTGATTGGTGGGCTTGTATAAAGATCAATTTATACG-CTGATGCGGAGAC 359
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 301 ATATGGTTGTTTGATTGGTGGGCTTGTATAAAGATCAATTTATACGTC-GATGCAGAGAC 359
Query 360 TCTAGAGTTGATTGGGAAAGAACATGCACTTGTCTTAAGCAATCATCGAAGTGACATTGA 419
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 TCTAGAGTTAATTGGGAAAGAACACGCACTTGTCTTAAGCAATCATCGAAGTGACATTGA 419
Query 420 TTGGCTTATTGGATGGGTCATGGCTCAGCGTGCAGGTTGTCTTGGAAGCTCTTTAGCCAT 479
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 420 TTGGCTTATTGGATGGGTCATGGCTCAGCGTGTAGGTTGTCTTGGAAGCTCATTAGCCAT 479
Query 480 CATGAAGAAAGAAGCCAAGTATCTTCCAATCATAGGTTGGTCAATGTGGTTTTCGGATTA 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 CATGAAGAAAGAAGCCAAGTATCTTCCAATCATAGGTTGGTCGATGTGGTTTTCGGATTA 539
Query 540 CATTTTCTTGGAAAGAAGTTGGGCCAAAGATGAGAATACCCTCAAGGCAGGTTTTAAACG 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 CATTTTCTTGGAAAGAAGTTGGGCTAAAGATGAGAATACCCTCAAGGCAGGTTTTAAACG 599
Query 600 ACTTGAGGACTTTCCTATGACATTTTGGTTAGCTCTTTTCGTTGAAGGAACTCGTTTCAC 659
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACTTGAAGACTTTCCAATGACATTTTGGTTAGCTCTTTTCGTTGAAGGAACTCGTTTCAC 659
Query 660 TCAAGAGAAGCTTGAAGCTGCTCAAGATTACGCCTCTATCAGAAGCTTACCGTCTCCTCG 719
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 TCAGGAGAAGCTTGAAGCTGCTCAAGAGTACGCCTCTATCAGAAGCTTACCGTCTCCTCG 719
Query 720 AAATGTTCTGATTCCTCGTACAAAGGGTTTTGTTTCGGCGGTGTCTCAAATACGGTCATT 779
||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 720 AAATGTTTTGATTCCTCGTACAAAGGGATTTGTTTCGGCAGTGTCTGAAATACGGTCATT 779
Query 780 TGTTCCTGCAATTTATGACTGTACCTTAACTGTTCATAACAATCACCCTACACCAACTCT 839
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 780 TGTTCCTGCAATATATGACTGTACCTTAACCGTTCATAACAATCAGCCTACACCAACTCT 839
Query 840 GCTTAGGATGTTCAGTGGACAATCATCTGAGGTGAATTTGCTGATGAGACGTCACAAAAT 899
||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 840 GCTTAGGATGTTCAGTGGACAATCATCTGAGATAAATTTGCAGATGAGACGTCACAAAAT 899
Query 900 GAGTGAGTTGCCAGAAACCGATGATGGTATTGCACAATGGTGCCAAGATCTCTTTATCAC 959
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 900 GAGTGAGTTGCCAGAAACCGATGATGGCATTGCACAATGGTGCCAAGATCTATTTATCAC 959
Query 960 GAAGGATGCTCAACTTGAGAAATATTTTACAAAAGACGTTTTCAGCGACTTGGAAGTTCA 1019
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 960 CAAGGATGCTCAACTTGAGAAATACTTCACAAAAGACGTTTTCAGCGACTTGGAAGTTCA 1019
Query 1020 CCAAATCAACCGGCCAATCAAACCATTGATCGTGGTCATCATTTGGTTATGTCTTC-TAA 1078
|||||| |||||||||||||| ||||| ||||||||||||||||||||| || ||| |
Sbjct 1020 CCAAATTAACCGGCCAATCAAGCCATTAATCGTGGTCATCATTTGGTTAGGT-TTCCTTG 1078
Query 1079 TATTCGGTGGTTTCAAGCTACTCCAATGGCTCTCCATAGTGGCCTCGTGGAAGATCATTC 1138
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1079 TATTCGGTGGTTTCAAGCTACTGCAATGGCTTTCAATAGTGGCCTCGTGGAAGATCATTC 1138
Query 1139 TTTTGTTTGTGTTCTTCTTGGTGATTGCAACTATAACAATGCAAGTACTAATTCAATCGT 1198
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1139 TTTTGTTTGTGTTCTTCTTGGTCATTGCAACTATAACAATGCAAATACTAATTCAATCGT 1198
Query 1199 CTGAGTCACAACGTTCCACTCCTGCCAAGAGACCTCTACAAGAACAGCTTATTTCTGCCT 1258
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1199 CTGAGTCACAACGTTCAACTCCAGCCAAGAGACCTCTACAAGAACAGCTTATTTCTGCTT 1258
Query 1259 AGTACAAAAGAAACCTCTGTTTTAGCCACATATTTTACATTGCATTGTTCCTTCACTCAA 1318
|| |||||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1259 AGGACAAAAGAAAACTCTATTTAAGCCACATATTTTACACTGCATTGTTCCTTCACTCAA 1318
Query 1319 CCATTTAAACATAATTGTTTTTGTTAGT 1346
|| |||||||||||||||||||||||
Sbjct 1319 --ATGTAAACATAATTGTTTTTGTTAGT 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5