BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474241
Length=1580
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51310.1 | Symbols: | transferases;tRNA (5-methylaminomethy... 2468 0.0
> AT1G51310.1 | Symbols: | transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases
| chr1:19018979-19021804
REVERSE LENGTH=1769
Length=1769
Score = 2468 bits (1336), Expect = 0.0
Identities = 1500/1577 (95%), Gaps = 19/1577 (1%)
Strand=Plus/Plus
Query 1 GCAAAACAGAGCAGATAAGATAAACCCTCC-TTCTTTAACCGAAGGTTCAATCGCCGGCG 59
||||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||
Sbjct 4 GCAAAACAGTGCAGATAAGATAAACCCTCCGGT-TTTACCCGAAGGTTCAATCGCCGGCG 62
Query 60 AGTTCCGATGTTCTCCGCCGTCGCCAAACCCTTCCTCTCTCCCTCACCGCCACTCTTTCG 119
| |||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 63 AATTCCGATGTTCTCCGCCGTCGCCAAACCCTTCCTCTCTCCCTCACCACCGCTATTTCG 122
Query 120 CCTTCCTCTTTCTTCTAtctcaatttccttccgcgttttcccctcattcttctcctcctc 179
|||||||||||| ||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 123 CCTTCCTCTTTCCTCTATCTCAATTTCCTTCCGCGTTTTCCCCTCA---TTCT--T-CT- 175
Query 180 cccatcctcctcttcctctctcctt-ccgtctcctcAATCTTCTGATCCAATTACGCCTC 238
|| |||||||||||||||| || |||||||| ||||||||| | ||||| |||||||
Sbjct 176 -CC-TCCTCCTCTTCCTCTC-AATTGCCGTCTCCACAATCTTCTAACCCAATCACGCCTC 232
Query 239 TCATATCCTCGGACCGTAACTATAGTCGCCATGCCTTTATCGTCGACCAATACCTCTCAT 298
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 233 TCATATCCTCGAACCGTAACTATAGCCGCCATGCCTTTATCGTCGACCAATACCTCTCAT 292
Query 299 GTTCCATGCCTGAGAAGCCTCTTCGTGTCGCCGTTCTCCTCAGTGGCGGCGTCGATAGCA 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 293 GTTCCATGCCTGAGAAGCCTCTTCGTGTCGCCGTACTCCTCAGTGGCGGCGTCGATAGCA 352
Query 359 GTGTCGCTCTCCGTCTCCTCCACGCCGCTGGTCACTCCTGTACAGCTTTCTATCTCAAAA 418
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 353 GTGTCGCTCTCCGTCTCCTCCACGCCGCTGGTCACTCATGTACCGCTTTCTATCTCAAAA 412
Query 419 TCTGGTTTCAGGAAGGCTTTGAGAATTTCTGGAATCAGTGTCCTTGGGAAGATGATTTGA 478
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 413 TCTGGTTTCAGGAAGGCTTTGAGAATTTCTGGAATCAGTGCCCTTGGGAAGATGATTTGA 472
Query 479 AGTATGCTAAGCATGTTTGTGAGCAGGTTGATGTTCCTTTGGAGGTTGTGCATTTAACAG 538
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 AATATGCAAAACATGTTTGTGAGCAGGTTGATGTTCCTTTGGAGGTTGTGCATTTAACAG 532
Query 539 ATGAATATTGGGAAAGAGTTGTTTCCTACATTATTGAGGAGTATCGGTGTGGACGTACAC 598
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 533 ATGAATATTGGGAAAGAGTTGTTTCCTACATTATTGAGGAGTATCGATGTGGACGTACAC 592
Query 599 CTAATCCGGATGTTCTATGTAATACTAGAATTAAGTTCGGTGCATTCATGGATGCAATCA 658
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 593 CTAATCCGGATGTTCTATGTAATACTAGAATTAAGTTTGGTGCATTCATGGATGCAATCA 652
Query 659 GTGATATGGAGTATGACTACGTAGCTTCAGGTCATTATGCTAAAGTGGTTCATCCTCCTG 718
||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||
Sbjct 653 GTGATATGGAGTATGACTATGTAGGTTCAGGTCATTATGCTAAAGTGGTCCATCCTCCTG 712
Query 719 CTGACCAAAATGATGCATCATCTGTTTTGGAACTATCACAAGACATGGTGAAGGATCAGA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CTGACCAAAATGATGCATCATCTGTTTTGGAACTATCACAAGACATGGTGAAGGATCAGA 772
Query 779 CCTACTTCCTCTCACATCTCTCTCAAACCCAGCTTAAGCGACTGATTTTCCCACTTGGTT 838
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 773 CCTACTTCCTCTCACATCTCTCTCAAACCCAGCTTAAGCGACTGCTTTTCCCACTTGGTT 832
Query 839 GTGTAAAAAAGGACGAAGTTCGCAAACTAGCCACACAATTCGATTTGCCAAACAAAGATA 898
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 833 GTGTAAAAAAGGACGAAGTTCGCAAACTAGCCACACAATTCGATTTGCCAAATAAAGATA 892
Query 899 GAAAGGATTCGCAAGGAATTTGTTTCCTTGGGAAGATAAAGTTCAGCGACTTTGTCTGTA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GAAAGGATTCGCAAGGAATTTGTTTCCTTGGGAAGATAAAGTTCAGCGACTTTGTCTGTA 952
Query 959 CACACATAGGGGAGATGGAAGGAATTATATTGGAAGCCGAAACTGGGGATTTTCTTGGTA 1018
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 953 GACACATAGGGGAGATGGAAGGAATTATATTGGAAGCCGAATCTGGGGATTTTCTTGGTA 1012
Query 1019 ACCACCGGGGATTTTGGTTTTACACAATTGGACAACGCCAAGGATTGCGTTTACCCGGTG 1078
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1013 ACCACCGGGGATTTTGGTTTTACACAATTGGACAACGCCAAGGCTTGCGTTTACCCGGTG 1072
Query 1079 GGCCCTGGTATGTTGTTGAAAAGGACACCAAGAACAACGTAGTGTTTGTCTCCAGAAATT 1138
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1073 GCCCCTGGTATGTTGTTGAAAAGGACACCAAGAACAATGTAGTGTTTGTCTCCAGAAATT 1132
Query 1139 ACTACTCAATCGACAAGAGAAGGCGGATTTTCCGTGTTGGCTCCTTAAGATGGCTTAGTG 1198
| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1133 ATTACTCAATCGACAAGAGAAGGCGGATTTTCCGTGTCGGCTCCTTAAGATGGAATAGTG 1192
Query 1199 GGAAACCTTCAGGCTATGTTAGAGAGCTCCGTTGCAAGGTCCGACATGGGCCTAGCTTCT 1258
|||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1193 GGAAACCTTCAGGCAAAGTTAGAGAGCTCCGTTGCAAGGTCCGACATGGGCCTGGCTTCT 1252
Query 1259 ACAGCTGCAGTTTTGAAATGGAAGCAGACGGAGATGTTGCAGTTGTGCACCTAGACGAAG 1318
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1253 ACAGCTGCAGTTTTGAAATGGAAGGAGACGGAGATGTTGCAGTTGTGCACCTAGACGAAG 1312
Query 1319 ACGATCAAGGTCTAGCTGCTGGACAGTTTGCAGCGTTTTACGAGGGAACCACTTGCATTG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 ACGATCAAGGTCTAGCTGCTGGACAGTTTGCAGCGTTTTACGAGGGAACCACTTGCATTG 1372
Query 1379 GTTCAGGCGTAATTCTGGAGTCATGGGACGATCAGTGTTTCCCAGTCTGTGCAAAAGCCC 1438
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1373 GTTCAGGCGTAATTCTGGAGTCATGGGATGATCAGTGTTTCCCGGTCTGTGCAAAAGCCC 1432
Query 1439 TTCAACTTGCAGCGAT-GGAAGATAAAACCAAACTCGGGAAACCTGTCAAAATCAAGACA 1497
||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1433 TTCAACTCGCAGC-ATTGGAAGATAAAACCAAACTCGGGAAACCTGTCAAAATCATGACA 1491
Query 1498 ATGCC-ACTTACGTTATCTGTCGAGGCTGATTCAGGAGAATCCAGTGAAGAAG-AAAAGC 1555
||||| ||| | || |||||| ||||||||| |||||||| |||||| ||| | |||| |
Sbjct 1492 ATGCCTACT-ATGTCATCTGTTGAGGCTGATACAGGAGAAGCCAGTGCAGA-GCAAAAAC 1549
Query 1556 TGGTTAATGCATGAGAG 1572
| || || |||| ||||
Sbjct 1550 TAGTCAACGCATAAGAG 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78011646930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5