BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474242

Length=784
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superf...   335    4e-91


> AT2G36730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily 
protein | chr2:15405068-15406573 REVERSE LENGTH=1506
Length=1506

 Score =  335 bits (181),  Expect = 4e-91
 Identities = 244/271 (90%), Gaps = 18/271 (7%)
 Strand=Plus/Plus

Query  1    ATTCAAGCTTCAAATCCAGGAAACACCAATGTCTTATCTTTCTCAAGCTATGTTCCTCAT  60
            ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct  17   ATTCATGCTTCAAATCCAGGAAACACCAATGTCTTATCTTCCTCAAGCTATGTTCCTCAA  76

Query  61   TTAAACATCTTCTACAGATCCATGGTCAAATCCATGTCTCCTCACTCCAAAATGACAGCT  120
            ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct  77   TTAAACACCTTCTACAGATCCATGGTCAAATCCATCTCTCCTCTCTCCAAAATGACAGCT  136

Query  121  TTATCATCAGCGAGCTTGTACGGGGTTCATCACTATCCCTCGTCAAAGTCTTTGACTCAA  180
            |||||||||||||||||||||||| ||||||||||||||||| |     |    |   ||
Sbjct  137  TTATCATCAGCGAGCTTGTACGGGTTTCATCACTATCCCTCG-C-----C----A---AA  183

Query  181  AGACCTTACCTTTGCGCGAACCCTTCTGCTTCACTCTTCAGATTTGACTCCTTCTACTTG  240
             |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  184  -GACCTTGCCTTTGCGCGAACCCTTCTGCTTCACTCTTCAGATTCGACTCCTTCTACTTG  242

Query  241  GAATTAATATGCTCAGTAGAGGCTATTCTTC  271
            |||| | |  |||||||||||||||||||||
Sbjct  243  GAAT-A-T--GCTCAGTAGAGGCTATTCTTC  269


 Score =  320 bits (173),  Expect = 1e-86
 Identities = 193/203 (95%), Gaps = 0/203 (0%)
 Strand=Plus/Plus

Query  582   CCACACGACATTGGTGGATGACAGGTACAAATACTTCCACGATATGGAGAAAGCACACAA  641
             |||||||  ||||||||||||| |||||||||| |||||||| |||||||||  ||||||
Sbjct  975   CCACACGGGATTGGTGGATGACGGGTACAAATATTTCCACGAAATGGAGAAAATACACAA  1034

Query  642   GATCAAACCAATGATGATTCACTACAGAGCAATGGTAGATATCTTGGGACGTGCAAGTCG  701
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct  1035  GATCAAACCAATGATGATTCACTACGGAGCAATGGTAGATATCTTGGGACGTGCAGGTCG  1094

Query  702   ACTAAACGAGGCGTATGACTTCATAAATAAAATGCCTTTTGAGCCTGATGCGGTTGTTTG  761
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1095  ACTAAACGAGGCGTATGACTTCATAAAGAAAATGCCTTTTGAGCCTGATGCGGTTGTTTG  1154

Query  762   GAGGACTCTACTCTCCGCTTGTA  784
             |||||||||||||||||||||||
Sbjct  1155  GAGGACTCTACTCTCCGCTTGTA  1177


 Score =  231 bits (125),  Expect = 6e-60
 Identities = 143/152 (94%), Gaps = 0/152 (0%)
 Strand=Plus/Plus

Query  362  CCAGGAAGGTGTTCGACGAAATGACTGACAGAAATTTTGTTTCTTGGAACTCGACTATGA  421
            |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct  500  CCAGGAAGGTGTTCGACGAAATGACTGAGAGAAATGTTGTTTCTTGGAACTCGATTATGA  559

Query  422  CAGCTCTTGTTGAGAATGGTAAGTTCAATTTGGTGTTTAAGTGTTTTTGTGAGATGATTG  481
            | ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct  560  CTGCTCTTGTTGAGAATGGTAAGTTAAATTTGGTGTTTGAGTGTTTTTGTGAGATGATTG  619

Query  482  GTAGGAGGTTTTGTCCGGATGAGACGACAATG  513
            ||| | |||||||||| |||||||||||||||
Sbjct  620  GTAAGCGGTTTTGTCCAGATGAGACGACAATG  651


 Score =  145 bits (78),  Expect = 8e-34
 Identities = 85/88 (97%), Gaps = 1/88 (1%)
 Strand=Plus/Plus

Query  274  ATGGAGAGACGAGGAATCAAACCTAATAAGCTTACTTTTCCTTTTCTTCTCAAGGCTTGT  333
            ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  310  ATGAAGAGACGAGGAATCAAACCTAATAAGCTCACTTTTCCTTTTCTTCTCAAGGCTTGT  369

Query  334  GCTTCGTTTTTAGGTCTCACTGC-GGGA  360
            ||||||||||||||||||||||| ||||
Sbjct  370  GCTTCGTTTTTAGGTCTCACTGCTGGGA  397


 Score =  119 bits (64),  Expect = 5e-26
 Identities = 64/64 (100%), Gaps = 0/64 (0%)
 Strand=Plus/Plus

Query  513  GTATGCTAGGTTAGTTTTCGAAAGAATGGTTGACAAAAATGTTTGGACTTGGAGTGCCAT  572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  792  GTATGCTAGGTTAGTTTTCGAAAGAATGGTTGACAAAAATGTTTGGACTTGGAGTGCCAT  851

Query  573  GATT  576
            ||||
Sbjct  852  GATT  855



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38127717573


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5