BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474246
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51355.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 806 0.0
> AT1G51355.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G20898.1); Has 52 Blast
hits to 52 proteins in 9 species: Archae - 0; Bacteria -
0; Metazoa - 2; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:19041397-19042146
FORWARD LENGTH=750
Length=750
Score = 806 bits (436), Expect = 0.0
Identities = 524/563 (93%), Gaps = 19/563 (3%)
Strand=Plus/Plus
Query 1 TATAGATTCACATTCACCCATTTC-CAtt-tttttt-CT-TGctctct--c-tctc-tct 52
|||||||||||||||||||||||| | || |||||| || | |||||| | |||| |||
Sbjct 1 TATAGATTCACATTCACCCATTTCTC-TTCTTTTTTGCTCT-CTCTCTCCCTTCTCTTCT 58
Query 53 ctctTATTTTTGGTCTCAAAAATGGCATCAAAAGGAAAGAAACCAATaaaaaaaaCAACT 112
|||||| || ||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 59 CTCTTA-TTCTGGTCTCAAAAATGGCATCAAAAGGAAAGAAACCACTAAGAAGAACAACT 117
Query 113 ACAAGAAGAAGAAAAAGAAGCCATTTCAAGAACCCATCTCCTCCATGTAGTACCAATAGT 172
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 118 ACAAGAAGAAGAAAAAGAAGCCACTTCAAGAACCCATCTCCTCCATGTAGTATCAATAGT 177
Query 173 GACGTCACTTCAACGTCATCAACATCTACTTCTCCCACATCAATGGTCACGCCATCTTCG 232
|||||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||
Sbjct 178 GACGTCACTTCAACGTCATCAACATCTACTTCACCCACATCAACGGCCACGCCATCTCCG 237
Query 233 ATTCCAGTAGAGAGTGGATGTTGTACTCCGAAATCTGAGAAGTCACGAATACCGGAGATG 292
|| ||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 GTTTCAGCAGAGAGTGGATGTTGTACTCCG------GAGAAGTCACGAATACCGGAGATG 291
Query 293 CTGACGTGTCCGCCGGCGCCGAAGAAGCAAAAGGTGGCGCAAAACTGTTCTTTGAGGAGG 352
||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 292 CTGACGTGTCCACCGGCACCGAAGAAGCAAAAGGTGGCGCAAAACTGCGCTTTAAGGAGG 351
Query 353 AGACAAATCGCTTTCTTTGCTCCTCCGGATGTAGAACTCTTCTTCGTTTTCGCACTTGGT 412
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 352 AGACAAATCGCTTTCTTTGCTCCTCCGGATGTAGAGCTCTTCTTCGTTTTCGCACTTGGT 411
Query 413 CAAC-AAATCAATAAATAAGTTAAGTTTATAATTAGGGTTTTGTGATTACTATCATGGTA 471
|||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 412 CAACAAAAT-AATAAATAAGTTAAGTTTATAATTAGGGTTTTGTGATTATTATCATGGTA 470
Query 472 TCAATATCTAGTTTCTAGTTTGATTCAAATACAATAATATTTAAAGTATATTATAGAGAG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TCAATATCTAGTTTCTAGTTTGATTCAAATACAATAATATTTAAAGTATATTATAGAGAG 530
Query 532 TGTAGTGTGAGGttttgcttctt 554
|||||||||||||||||||||||
Sbjct 531 TGTAGTGTGAGGTTTTGCTTCTT 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34259688254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5