BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474248

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G37120.1 | Symbols:  | transposable element gene | chr5:1467...   481    2e-135


> AT5G37120.1 | Symbols:  | transposable element gene | chr5:14677666-14677962 
FORWARD LENGTH=297
Length=297

 Score =  481 bits (260),  Expect = 2e-135
 Identities = 284/296 (96%), Gaps = 0/296 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGCTAAGGAACGATGATCACGTTTTTAAATGGGTTGATGAAGCTTTGATCAATGAG  60
            ||||||||||||||| || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGAAGCTAAGGAACAATAATCACATTTTCAAATGGGTTGATGAAGCTTTGATCAATGAG  60

Query  61   ATAGATACATTGACAGCAAAGCATGGTGAAATTGAGAAGGAGCTGAAAGAGCTTAGAAGA  120
            ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct  61   ATAGAGACATTGACAGCAAGGCATGGTGAAATCGAGAAGGAGCTGAAAGAGCTTAGAACA  120

Query  121  GAGAGGTTGGAGTTTGAGAAGATGGTTTCTGAGAAGGTTGAAATGAACATGGAGAAGGAG  180
            ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  121  GAGAGGTTGGAGTTTGAGAAGATGGTTTCCGAGAAGGTGGAAATGAACATGGAGAAGGAG  180

Query  181  TTGAATGAGAAAGTAGAAGAAGCTTTGTCTGAAGCGAAAACAAGCAATAAGAAGATGATG  240
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTGAATGAGAAAGTTGAAGAAGCTTTGTCTGAAGCGAAAACAAGCAATAAGAAGATGATG  240

Query  241  ATTGTCGTAGTGTTAGGGTGTATGATCATGATCGGATTCTCTAAACTTGTAGGATG  296
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ATTGTCGTAGTGTTCGGGTGTATGATCATGATCGGATTCTCTAAACTTGTAGGATG  296



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13672827728


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5