BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474250
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 1951 0.0
> AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:19047882-19050162 FORWARD LENGTH=1452
Length=1452
Score = 1951 bits (1056), Expect = 0.0
Identities = 1158/1208 (96%), Gaps = 4/1208 (0%)
Strand=Plus/Plus
Query 1 TTATGGAAGGAGTTTTAGATGACGAGAATTTGGTATTCGAAACCACCAAAGGGATCAAAC 60
||||||||||| ||||||||| |||||| | || ||||||||||||||||| |||||||
Sbjct 77 TTATGGAAGGAACTTTAGATGAAGAGAATCTAGTCTTCGAAACCACCAAAGGTATCAAAC 136
Query 61 CAATTAAGAGTTTCGATGACATGGGCATGAATGATAAAGTTCTTCGCGGCGTTTATGACT 120
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 137 CAATCAAGAGTTTCGATGACATGGGGATGAATGATAAAGTTCTTCGCGGCGTTTATGACT 196
Query 121 ACGGTTACAAGAAACCATCTGAGATTCAGCAGAGAGCCTTGGTGCCGATTCTAAAAGGAC 180
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 197 ACGGTTACAAGAAACCATCTGAGATTCAGCAGAGAGCTTTGGTTCCGATTCTCAAAGGAC 256
Query 181 GAGATGTTATAGCTCAGGCTCAGTCTGGTACTGGTAAAACCTCCATGATTGCAATCTCCG 240
|||| || ||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 257 GAGACGTCATAGCTCAGGCTCAGTCCGGTACTGGTAAAACCTCTATGATTGCTATCTCCG 316
Query 241 TCTGTCAAATCGCCAACACT-TCTTCCAGAAAGGTTCAAGCCTTGGTGTTGTCTCCATCG 299
| || ||||||| ||||| | || |||||||||||||||| ||||||||||||||||||
Sbjct 317 TTTGCCAAATCGTCAACA-TATCCTCCAGAAAGGTTCAAGTCTTGGTGTTGTCTCCATCA 375
Query 300 AGAGAGCTGGCTTCACAAACAGAGAAGACTATACAGGTTATTGGGGCACATACCAATATT 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 376 AGAGAGCTGGCTTCACAAACAGAGAAGACTATACAGGCTATTGGGGCACATACCAATATT 435
Query 360 CAGGCGCATGCCTGCATTGGTGGTAAGAGCATTGGAGAAGATATCAAGAAGCTGGAGCGT 419
||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 436 CAGGCGCATGCTTGCATTGGTGGTAAGAGCATCGGTGAAGATATCAAGAAGCTAGAGCGT 495
Query 420 GGTGTCCATGCTGTGTCTGGGACACCTGGTCGAGTTTACGATATGATAAAGAGAGGAAGT 479
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GGTGTCCACGCTGTGTCTGGGACACCTGGTCGAGTTTACGATATGATAAAGAGAGGAAG- 554
Query 480 C-TACAGACTAAAGCTGTTAAACTTTTGGTTCTGGATGAATCAGATGAAATGCTGAGTAA 538
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CTTACAAACTAAAGCTGTTAAACTTTTGGTTCTGGATGAATCAGATGAAATGCTGAGTAA 614
Query 539 AGGTTTGAAAGACCAGATTTATGACGTTTACAGAGCTCTTCCACACGATATTCAGGTTTG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 AGGTTTGAAAGACCAGATTTATGACGTTTACAGAGCTCTTCCACACGATATTCAGGTTTG 674
Query 599 CTTGATTTCTGCTACTCTTCCTCAAGAGATTTTGGAGATGACAGAAAAGTTTATGACAGA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 CTTGATTTCTGCTACTCTTCCTCAAGAGATTTTGGAGATGACAGAAAAGTTTATGACAGA 734
Query 659 TCCTGTGAGGATTCTTGTGAAGCCTGATGAATTGACTCTTGAAGGAATTAAACAATACTA 718
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 735 TCCTGTGAGGATTCTTGTGAAGCCTGATGAATTGACTCTTGAAGGAATCAAACAATACTA 794
Query 719 TGTTGATGTTGATAAAGAAGAGTGGAAATTTGATACTCTTTGCGATCTTTATGGAAGGCT 778
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 795 TGTTGATGTTGATAAAGAAGAGTGGAAATTCGATACTCTTTGCGATCTTTATGGAAGACT 854
Query 779 TATTATTAATCAAGCTATTATCTTCTGCAACACAAGACAAAAGGTGGATTGGCTTACTGA 838
|| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 855 TACTATTAACCAAGCTATTATCTTCTGCAACACAAGACAAAAGGTTGATTGGCTTACTGA 914
Query 839 AAAGATGAGGAGTAGCAATTTCATAGTCTCATCAATGCATGGAGACAAACGTCAAAAAGA 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 915 GAAGATGAGGAGTAGCAATTTCATAGTCTCATCAATGCATGGAGACAAACGTCAAAAGGA 974
Query 899 GAGAGATGAAATCATGAACCAGTTTCGGTCATTTAAAAGCCGTGTTTTAATCGCCTCAGA 958
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GAGAGATGATATCATGAACCAGTTTCGGTCATTTAAAAGCCGTGTTTTAATCGCCTCAGA 1034
Query 959 TGTATGGGCACGAGGGATCGACGTTCAAACTGTTTCTCATGTCATTAATTATGATATACC 1018
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1035 TGTATGGGCACGAGGGATCGACGTTCAAACTGTTTCTCATGTCATCAATTATGATATACC 1094
Query 1019 CAACAACCCGGAGCTATACATTCATCGTATAGGACGAGCTGGTCGTTTTGGTCGTGAAGG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 CAACAACCCGGAGCTATACATTCATCGTATAGGACGAGCTGGTCGTTTTGGTCGTGAAGG 1154
Query 1079 TGTTGCCATTAACTTTGTAAAATCTTCAGACATGAAGGATCTTAAGGATATTGAGCGACA 1138
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1155 TGTTGCCATTAACTTTGTAAAATCTTCGGATATGAAAGATCTTAAGGATATTGAGCGACA 1214
Query 1139 TTACGGTACCAAAATCCGCGAGATGCCAGCTGATCTTGTCTAGAGATTTTGTTTCCTTGA 1198
||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1215 TTACGGTACTAAAATCCGCGAGATGCCAGCTGATCTTGTCTAAAGATGTTGTTTCCTTGA 1274
Query 1199 AGCTGAAG 1206
||||||||
Sbjct 1275 AGCTGAAG 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61746670350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5