BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474256
Length=1714
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51440.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2604 0.0
> AT1G51440.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:19070913-19072694 FORWARD LENGTH=1782
Length=1782
Score = 2604 bits (1410), Expect = 0.0
Identities = 1633/1737 (94%), Gaps = 29/1737 (2%)
Strand=Plus/Plus
Query 1 AATCTAAATGGCTTCTCCATCATCACCAATAACTCTCAAAAACCCAAGATTCTTCTCTTC 60
||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 52 AATCTAAATGGCTTCTCTATCTTTACCAATAACTCTCAAGAACCCAAGATTCTTCTCTTC 111
Query 61 TTCTCCTCACAAGATCTTTAAAACCCAACCCCAAACCCTAATTTTGACAACAAAGTTCAA 120
||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 112 TTCTCCTCAAAACATCTTTAAAACCCAACCCCAAACCCTAGTTTTGACAACAAAGTTCAA 171
Query 121 GACTTGCTCCATCATTTGCGCATCTTCATGCACAAGCATAAGCTCTTCAACGACTCAACA 180
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GACTTGTTCCATCATTTGCTCATCTTCATGCACAAGCATAAGCTCTTCAACGACTCAACA 231
Query 181 GAAGCAGCCAAAGAAACAAACCCATGTGTCAGACAACAAACGagaagaagataa--ggaa 238
||||||| |||| |||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 232 GAAGCAGTCAAATAAACAAACCCATGTGTCAGACAACAAACGAGAAGAA-A-AAGCGGAA 289
Query 239 g-ag--gaagaagaaaaagaagTTAGTCTTCGAGAAATTTGGAGAGAAGTACAAGGTTGC 295
| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 GAAGAAGAAGAAGAGAAAGAAGTTAGTCTTCGAGAAATTTGGAGAGAAGTACAAGGTTGC 349
Query 296 AATAATTGGGAAGGACTACTAGATCCAATGAACAATCATCTTCGAAGAGAGATCATACGT 355
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 AATAATTGGGAAGGACAACTAGATCCAATGAACAATCATCTTCGAAGAGAGATCATACGT 409
Query 356 TATGGCGAATTCGCTCAAGCTTGCTATGACTCATTCGACTTCGATCCTCACTCTAAATAT 415
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TATGGCGAATTTGCTCAAGCTTGCTATGACTCATTCGACTTCGATCCTCACTCTAAATAC 469
Query 416 TGTGGCTCTTGCAAATACCATCCTTCTGATTTCTTCTCAAACCTTGACCTACATCTCCAC 475
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 470 TGTGGCTCTTGCAAATACCATCCTTCTGATTTCTTCTTAAACCTTGACCTACATCTCCAC 529
Query 476 AAAGGCTACACCATAACACGTTACCTCTACGCTACATCCAACATCAACCTCCCAAACTTC 535
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 530 AAAGGCTACACCATAACACGTTACCTCTACGCTACATCCAACATAAACCTCCCAAACTTC 589
Query 536 TTCCAGAAATCAAAACTCAGCTCCATTTGGAGCCAACACGCCAACTGGATGGGTTATGTT 595
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||
Sbjct 590 TTCCAGAAATCAAAACTCAGCTCGATTTGGAGCCAACACGCGAACTGGATGGGTTTTGTT 649
Query 596 GCTGTAGCTACGGACGAAGAAGAGGTGCGTCGGCTTGGGAGACGTGACATAGTCATTGCT 655
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 650 GCTGTAGCTACGGACGAAGAAGAGGTGAGTCGGCTCGGGAGACGTGACATAGTCATTGCT 709
Query 656 TGGAGAGGCACAGTCACTTATCTCGAATGGATTTATGACTTAAAAGACATTCTTTGTTCA 715
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 710 TGGAGAGGCACAGTCACTTATCTCGAATGGATCTATGACTTAAAAGACATTCTTTGTTCA 769
Query 716 GCTAACTTTGGTGACGACCCATCGATCAAAATTGAATTAGGGTTTCATGACTTGTACACC 775
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 770 GCTAACTTCGGTGACGACCCATCTATCAAGATTGAATTAGGGTTTCATGACTTATACACC 829
Query 776 AAGAAAGAAGATTCTTGCAAATTCTCTTCCTTTTCGGCTAGGGAACAGGTTTTGGCCGAA 835
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 830 AAGAAAGAAGATTCTTGCAAATTCTCTTCCTTCTCGGCTCGGGAACAGGTTTTGGCTGAA 889
Query 836 GTCAAACGGCTTCTTGAGTACTACGGTACCGAAGAAGAAGGTCATGAGATAAGCATCACC 895
|||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 890 GTCAAACGGCTTATTGAGTACTACGGTACCGAAGAAGAAGGTCACAAGACAAGCATCACC 949
Query 896 GTGACTGGGCACAGCCTTGGCGCATCTCTTGCTTTGGTCAGTGCTTATGATATTGCGGAG 955
||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| || |||
Sbjct 950 GTGACAGGGCACAGCCTCGGCGCCTCTCTGGCTTTGGTCAGTGCTTATGATATCGCAGAG 1009
Query 956 CTAAACTTGAACCATGTACCGGAGAACAACTATAAAGTTCCAATTACTGTTTTCTCCTTC 1015
||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1010 CTAAACTTGAATCACGTACCGGAGAACAACTATAAAATTCCAATTACTGTTTTCTCCTTC 1069
Query 1016 TCGGGACCTCGAGTAGGTAACTTGAGGTTCAAGGAACGATGCGACGAACTAGGGGTTAAA 1075
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1070 TCGGGACCTCGAGTAGGTAACTTGAGGTTCAAGGAACGATGTGACGAACTAGGGGTTAAA 1129
Query 1076 GTTCTGAGAGTTGTTAATGTACACGACAAGGTACCTTCTGTTCCAGGGATATTCACAAAC 1135
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 GTTCTGAGAGTCGTTAATGTACACGACAAGGTACCTTCTGTTCCAGGGATATTCACAAAC 1189
Query 1136 GAAAAGTTTCAGTTTCAGAAGTATGTAGAAGAAAAAACATCATTCCCATGGAGCTACGCG 1195
|| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1190 GAGAAGTTTCAGTTTCAGAAGTATGTGGAAGAAAAAACATCATTCCCGTGGAGCTACGCG 1249
Query 1196 CACGTCGGTGTGGAGCTTGCCTTGGACCACAAGAAAAGCCCATTTCTGAAACAGACTAAG 1255
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1250 CACGTCGGCGTGGAGCTTGCCTTGGACCACAAGAAAAGCCCATTTCTGAAACCGACTAAG 1309
Query 1256 GATTTGGGTTGTGCACATAACCTAGAAGCTTTGCTTCATCTAGTAGATGGATATCATGGA 1315
||||||||||||||||||||||||||||||||||||||| | || ||||| |||||||||
Sbjct 1310 GATTTGGGTTGTGCACATAACCTAGAAGCTTTGCTTCATTTGGTGGATGGTTATCATGGA 1369
Query 1316 AAAGACGAAGAAGCACATAAGAGATTCTGTTTGGTGACAAAGAGAGACATAGCTTTAGTG 1375
||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1370 AAAGACGAAGAAGCAGAGAAGAGATTTTGTTTGGTGACAAAGCGAGACATAGCTTTAGTG 1429
Query 1376 AATAAGAGTTGTGATTTCTTGAGAAGTGAGTACCATGTGCCGCCTTGTTGGAGACAAGAC 1435
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1430 AATAAGAGTTGTGATTTCTTGAGAGGTGAGTACCATGTGCCGCCTTGTTGGAGACAAGAT 1489
Query 1436 GAGAACAAAGGGATGGTCAAGAGCAGCGATGGACGGTGGGTTCTGCCGGACCGACCACAG 1495
||||||||||| |||||||||| | ||||||||| ||||||||| ||||||||||||| |
Sbjct 1490 GAGAACAAAGGTATGGTCAAGAACGGCGATGGACAGTGGGTTCTTCCGGACCGACCACTG 1549
Query 1496 CTCGAACCTCACCGACCGGAGGATATCGCTCATCATCTTCAACTAGTTCTTGGGAAGGTT 1555
|| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1550 CTTGAACCTCACGGACCGGAGGATATCGCTCATCATCTTCAACAAGTTCTTGGGAAGGTT 1609
Query 1556 AACGATGATAATTTTAAACCCACAACGACTTAAGTCGAAAATTAAATATAAATAGTTATA 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 AACGATGATAATTTTAAACCCACAACGACTTAAGTCGAAAATTAAATATAAATAGTTATA 1669
Query 1616 A---T------GT-------GTG-GG-TCACGTTTAATAAATTGAGTATGTTAGTTAGTG 1657
| | || ||| || |||||||| ||||||||||||||||||| ||
Sbjct 1670 AAAATATTTTCGTAATTAATGTGTGGATCACGTTTGATAAATTGAGTATGTTAGT--GT- 1726
Query 1658 TTTGATTAATGATGCAATTGCACTTCTATAATTATGGAGGCCATCACCATCCCCCAT 1714
|| |||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1727 TT-GATTAATGATTTAATTAAACTTCTATAATTATGGAGGTCATCACCATCCCCCAT 1782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84738519960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5