BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474258
Length=2213
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51460.1 | Symbols: | ABC-2 type transporter family protein... 3531 0.0
> AT1G51460.1 | Symbols: | ABC-2 type transporter family protein
| chr1:19076982-19081433 REVERSE LENGTH=2285
Length=2285
Score = 3531 bits (1912), Expect = 0.0
Identities = 2103/2195 (96%), Gaps = 13/2195 (1%)
Strand=Plus/Plus
Query 28 ATACATGTCTACGCCGGAAGAGGCAATGTATGTGGCGTGGGAAGATCTTACGGTGGTGAT 87
||||||| |||||||||| | ||| ||||||||||||||||| |||||||||||||||||
Sbjct 95 ATACATGACTACGCCGGAGGGGGCGATGTATGTGGCGTGGGAGGATCTTACGGTGGTGAT 154
Query 88 ACCAAACTTCGGTGAAGGAGCCACGAAGAGATTACTGAATGGAGTGAATGGTTGTGGTGA 147
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 155 ACCAAACTTCGGTGAAGGAGCAACTAAGAGATTACTGAATGGAGTGAATGGTTGTGGTGA 214
Query 148 GCCAAATAGGATCTTAGCTATTATGGGTCCTTCAGGTTCAGGCAAATCTACGCTTCTTGA 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 GCCAAATAGGATCTTAGCTATTATGGGTCCTTCAGGTTCAGGCAAATCTACGCTTCTTGA 274
Query 208 TGCTTTAGCAGGAAGATTGGCAGGGAATGTTGTAATGAGTGGCAAAGTTCTTGTCAATGG 267
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 275 TGCTTTAGCAGGAAGATTAGCAGGGAATGTTGTAATGAGTGGCAAAGTACTTGTCAATGG 334
Query 268 CAAGAAGAGAAAACTTGACTTTGGTGCTGCCGCTTATGTGACACAAGAAGATGTGTTGCT 327
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 335 CAAGAAGAGAAGACTTGACTTTGGTGCTGCCGCTTATGTGACGCAAGAAGATGTGTTGCT 394
Query 328 AGGAACTTTAACAGTGAGAGAATCCATATCTTACTCAGCTCATCTCAGGCTCCCTTCAAA 387
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 395 AGGAACTTTGACAGTGAGAGAATCCATATCTTACTCGGCTCATCTCAGGCTCCCTTCAAA 454
Query 388 GCTTACTAGAGAAGAGATCAGTGACATTGTGGAAGCTACAATTACTGACATGGGTCTTGA 447
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 455 GCTTACCAGAGAAGAGATCAGTGACATTGTGGAAGCTACAATCACTGACATGGGTCTTGA 514
Query 448 AGAATGTTCAGACAGGACCATTGGAAACTGGCATTTGCGTGGAATAAGCGGCGGAGAGAA 507
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 515 AGAATGTTCAGACAGGACCATTGGAAACTGGCATTTGCGTGGAATAAGCGGAGGAGAGAA 574
Query 508 GAAACGGCTTAGTATTGCGCTCGAGGTCTTAACCAAACCAAGTCTCCTCTTTCTAGACGA 567
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 575 GAAACGGCTTAGTATTGCCCTCGAGGTCTTAACAAAACCAAGTCTCCTCTTTCTAGACGA 634
Query 568 ACCAACCAGTGGATTGGACAGTGCTTCAGCTTTCTTTGTGGTTCAGATTCTTAGAAACAT 627
|||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 635 ACCAACTAGTGGACTGGACAGTGCTTCAGCTTTCTTCGTGGTTCAGATTCTTAGAAACAT 694
Query 628 AGCAAGCAGTGGCAAAACTGTGGTTTCTTCAATTCATCAGCCGAGTGGTGAGGTTTTCGC 687
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 695 AGCAAGCAGTGGCAAAACTGTGGTTTCTTCGATCCATCAGCCGAGTGGTGAGGTTTTCGC 754
Query 688 CCTCTTTGATGACCTTCTACTGCTGTCTGGAGGAGAAACCGTTTACTTTGGCGAAGCAGA 747
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 755 CCTCTTTGATGACCTGCTACTTCTGTCTGGAGGAGAAACTGTTTACTTTGGCGAAGCAGA 814
Query 748 ATCTGCAACAAAGTTCTTTGGTGAAGCGGGTTTTCCTTGTCCCAGCAGACGGAATCCATC 807
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 815 ATCTGCAACAAAGTTCTTTGGTGAAGCAGGTTTTCCTTGTCCAAGTAGACGGAATCCATC 874
Query 808 TGACCACTTCCTTCGCTGTGTCAATTCAGATTTCGATAATGTCACAGCGGCTTTGGTTGA 867
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 875 AGACCACTTCCTTCGCTGTGTCAATTCCGATTTCGATAATGTCACAGCGGCTTTGGTTGA 934
Query 868 ATCTCGGCGAATCCAA-GATTCTTCTTTCTCTCATT-ATCAACTACATGAAACTTCAAAT 925
||||||| |||| ||| ||||| |||||||||| || | ||||||||||||||| ||||
Sbjct 935 ATCTCGGAGAAT-CAACGATTCATCTTTCTCTC-TTCACCAACTACATGAAACTACAAAC 992
Query 926 ACATTAGATCCTCTGGATGATATACCAACAGCAGAAATTAGAACAACACTTGTCAGAAAA 985
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 993 ACATTAGATCCTCTGGATGATATACCAACTGCAGAAATTAGAACAACACTTGTCAGAAAA 1052
Query 986 TTCAAGTGTTCGGTATATGCAGCAACTTCAAGAGCAAGAATTCAAGAAATAGCATCGATA 1045
|| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1053 TTTAAGTGTTCACTTTATGCAGCAGCTTCAAGAGCAAGAATTCAAGAAATAGCATCGATA 1112
Query 1046 GAGGGGCTTGTCACAGAAAGGAAAAAGGGGAGCCGAACAAATTGGTGGAAACAACTCAGA 1105
| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1113 GTGGGGATTGTCACAGAAAGGAAAAAGGGGAGCCAAACTAATTGGTGGAAACAACTCAGA 1172
Query 1106 ATACTTACTCAGCGATCTTTCATCAACATGAGTAGAGACGTGGGGTACTACTGGATGCGG 1165
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1173 ATACTTACTCAGCGATCTTTCATCAACATGAGTAGAGACTTGGGGTACTACTGGATGCGG 1232
Query 1166 ATTGCAGTCTACATAGTGTTATCCATTTGTGTCGGGTCAATCTTCTTCAACGTCGGGAGA 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 ATTGCAGTCTACATAGTGTTATCCATTTGTGTCGGGTCAATCTTCTTCAACGTCGGGAGA 1292
Query 1226 AACCACACAAATGTTATGAGTACTGCAGCTTGTGGCGGATTTATGGCAGGCTTTATGACA 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 AACCACACAAATGTTATGAGTACTGCAGCTTGTGGCGGATTTATGGCAGGCTTTATGACA 1352
Query 1286 TTCATGTCAATAGGAGGTTTCCAATCATTCATTGAAGAAATGAAGGTGTTTTCTCGGGAA 1345
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1353 TTCATGTCAATAGGAGGATTCCAATCCTTCATTGAAGAAATGAAGGTGTTTTCTCGCGAA 1412
Query 1346 AGGCTCAATGGACACTATGGGGTTGCAGTATATACTATGTCTAATTTACTCTCCTCATTA 1405
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1413 AGGCTCAATGGACACTATGGGGTTGCAGTATACACTGTGTCTAATTTACTCTCCTCATTA 1472
Query 1406 CCTTTCATAATCCTTATGTGCCTCTCCACTAGCTCAATCACTATCTACATGGTGAAGTTC 1465
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1473 CCTTTCATAATCCTTATGTGCCTCTCCACCAGCTCAATCACTATCTACATGGTGAGGTTC 1532
Query 1466 CAATCTGGAGGTTCTCATTTCTTCTACAATTGTCTCGACCTCATCTGTGCGATTACAACT 1525
||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1533 CAATCCGGAGGTTCTCATTTCTTCTACAACTGTCTCGACCTTATCTGCGCGATTACAACT 1592
Query 1526 GTGGAGAGTTGCATGATGATGATAGCTTCAGTAGTCCCTAACTTCTTGATGGGAGTCATG 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 GTGGAGAGTTGCATGATGATGATAGCTTCAGTAGTCCCTAACTTCTTGATGGGAGTCATG 1652
Query 1586 TTGGGAGCTGGTTACATTGGAATTATGGTGTTAAGTGCGGGTTTTTTCCGATTCTTCCCC 1645
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1653 TTGGGAGCTGGTTACATTGGAATTATGGTGTTAAGTGCGGGGTTTTTCCGATTCTTCCCC 1712
Query 1646 GACTTACCTATGGTGTTCTGGCGATACCCGGTGTCCTACATAAACTACGGAGCATGGGCA 1705
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1713 GACTTACCAATGGTGTTCTGGCGATACCCGGTGTCCTACATAAACTATGGTGCATGGGCA 1772
Query 1706 CTACAGGGAGCATTCAAGAATGAGATGATTGGGGTCGAGTATGATTCTCCGATACCTTTG 1765
||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct 1773 CTACAGGGAGCATACAAGAATGAGATGATTGGGGTGGAGTATGATTCTCCGTTACCCTTG 1832
Query 1766 GTACCAAAAATGAAAGGGGAACTCATTCTTCAAACTGTTTTAGGCATAAATCCAGAAAGA 1825
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1833 GTACCAAAAATGAAAGGAGAACTCATTCTTCAAACTGTTCTAGGCATAAATCCAGAAAGT 1892
Query 1826 TCAAAGTGGTTGGACCTAGCAGTTGTGATGATGATTCTCATTGGGTATAGAATTGCCTTC 1885
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1893 TCAAAGTGGTTGGATCTAGCAGTTGTGATGATGATTCTCATTGGGTATAGGATTGCCTTC 1952
Query 1886 TTCGCCACCCTCAAGTTCCGGGAAAAGGTTTTCCCAGTTATTCACATGTTATACACAAAG 1945
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 TTCGCCATCCTCAAGTTCCGGGAAAAGGTTTTCCCAGTTATTCACATGTTATACACAAAG 2012
Query 1946 AGAACTCTGAGCCATATCCAGAAAAGGCCTTCTTTCAGAAGAATGACACCTTTCCATTCC 2005
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2013 AGAACTCTGAGCCATATCCAGAAAAGGCCTTCTTTCAGAAGAATGACACCTTTCCCTTCC 2072
Query 2006 AGGCGATACCCTGTTCACCATGCTCTCTCTTCTCAGGAAGGACTTAACTCTCCACTGCAT 2065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 AGGCGATACCCTGTTCACCATGCTCTCTCTTCTCAGGAAGGACTTAACTCTCCACTGCAT 2132
Query 2066 TAGACGCATATACAGCAGAATGCAATGTTACATATATTTCAATATGTCAGATGTTACTCT 2125
|||| ||||||||||||| ||||||| || |||||||||||||||||||||||| |||||
Sbjct 2133 TAGAAGCATATACAGCAGGATGCAAT-TTCCATATATTTCAATATGTCAGATGTCACTCT 2191
Query 2126 CTTCAAACTTGATAAACTGTTTGTAGCCTGTTGTGTAAG-aaaaaaaaaa-a---GAGA- 2179
|||||||||||||||||||||||||||| |||||||||| |||||||||| | ||||
Sbjct 2192 CTTCAAACTTGATAAACTGTTTGTAGCCCGTTGTGTAAGGAAAAAAAAAAGAAAAGAGAG 2251
Query 2180 -TACTATTCATTCTGACTAATCAGATTTGTTTAGC 2213
|||||| ||||||||||||| |||||||||||||
Sbjct 2252 ATACTAT-CATTCTGACTAATGAGATTTGTTTAGC 2285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109788591915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5