BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474265
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51520.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1892 0.0
AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 531 1e-149
> AT1G51520.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19106687-19109587 FORWARD LENGTH=1971
Length=1971
Score = 1892 bits (1024), Expect = 0.0
Identities = 1240/1341 (92%), Gaps = 27/1341 (2%)
Strand=Plus/Plus
Query 1 AAACATACATTTATGATTTAACGCAAACCC--AAA-A------A---TTTTTCTCTTCGT 48
|||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct 1 AAACATACATTTATGATTTAACGCAAACCCAAAAAGAGCCTTCACCTTTTTTCTCTTCGT 60
Query 49 CTTCTTCACCATCTTCTGGGGAAAAACAAAACTTTC-CCGGCCATGGATCCCGGCGACCC 107
||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct 61 CTTCTTCACCATCTTGTGGGGAAAAACAAAAC-TTCTCCGGCCATGGATCCTGGCGACCC 119
Query 108 AACTTCGATAATCTTTTCAAAGATCAGAACTTTAGAACCAGAGAACGCTTCCAAAGTCAT 167
|||||| |||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct 120 AACTTCAATAATCTTTTCAAAGATCAGAACTTTCGAACTTGAGAACGCTTCCAGAGTCAT 179
Query 168 TGGCTATTTTCTATTGCAAGACATGGAACAGAGAGATTTGATTCGAATTGCTTTTGGTCC 227
|| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 TGACTATTTTCTCTTGCAAGACATGGAACAAAGAGATTTGATTCGAATTGCTTTTGGTCC 239
Query 228 TGACTCTCTCATTCAAACTTTCTGTC-GTAAAGCTAAA-TCCGATTTAGGTCTTTCCTCC 285
|||||||||||| || |||||||||| | ||||||||| | |||||||||| |||||||
Sbjct 240 TGACTCTCTCATACAGACTTTCTGTCAG-AAAGCTAAAGT-CGATTTAGGTTTTTCCTCG 297
Query 286 AACGGTTTCTCGAGACCCATCAATATCCATGGCCAGTCATTGT-CTCAGTCTTCTCCCAG 344
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 298 AACGGTTTCTCGAGACCCATCAATATCCATGGCCAGTCATTGTCCTC-GTCTTCTCCCAG 356
Query 345 AAATGGGTTCTTAGAGTTATCGAGAAACCCTAGCAACCCTTTGTCTCCTTCGTTTACTTC 404
|||||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||
Sbjct 357 AAATGGGTTCTTAGAGTTCTCGAGAAACCCTAGTAACCCTTTGTCTTCTTCGTTAACTTT 416
Query 405 GAACACACTCAGAG---ATAACCCTAACTTCAATTCTAGTCCCTTTCGTGAAAGTTCATC 461
|||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 417 GAACACACTCAGAGATAATAAGCCTAACTTCAATTCTAGTCCTTTTCGTGAAAGTTCATC 476
Query 462 ACTTTTTGCTTCTTCTTCCGGCGGCGATGAGCAGCAGCAACAACAATTCAGTAACAACTT 521
||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 477 ACTTTTTGCCTCTTCTT-C--CGGCGATGAGCAGCAGCAACAACAATTCAGTAACAACTT 533
Query 522 TTTGTTCACCAACGACGAGGATCCATTTGCTAATTTTCACAAGAGGAGTTTCTCGGCTAA 581
| ||||||| ||||||||||| |||||||| |||| |||||||||||||||||| |||||
Sbjct 534 TCTGTTCACAAACGACGAGGACCCATTTGCCAATTCTCACAAGAGGAGTTTCTCTGCTAA 593
Query 582 CGATGCTTGTCTTGAATCAGAGGAACCGGGGTTTGGAGGAGGGACCGGTTATCATCGGTT 641
|||||||||| |||| ||||||||||| ||||||||||||| | |||| ||||| ||
Sbjct 594 CGATGCTTGTTTTGAGTCAGAGGAACCATGGTTTGGAGGAGGAAATGGTTGTCATCAATT 653
Query 642 TCCACAAGGCGGTTTAGTTGATGATTTTGGTTCTTCTGCTGGCTTAGGTTCGCCGAGTGA 701
||||||||||||||||||||||| ||||||||| |||| || ||| || |||||||||||
Sbjct 654 TCCACAAGGCGGTTTAGTTGATGGTTTTGGTTCCTCTGGTGTCTTTGGATCGCCGAGTGA 713
Query 702 GATGGATTACATGCTAGAGGAGATGATGAGGATGAAGTTAGCTCAGCAAAAGAGAATGGT 761
||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 714 GATGGATTACATGCTTGAGGGGATGATGAGGATGAAGTTAGCTCAGCAAAAGAGCATGGT 773
Query 762 TGCTGCTCAGTTCATGGCGGCTTGTGGCTCTCCAATGTTGCATAGACAAGGATCAGGGCA 821
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 774 TGCTGCTCAGTTTATGGCGGCTTGTGGCTCTCCAATGTTGCATAGACACGGATCAGGACA 833
Query 822 TTTTGGAGAAGAAGGTGGTTACCATTTTAGTCCAGGAAGGCATGAAAGAGAGGATTCAGT 881
||||||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 834 TTTTGGAGAAGAATGTGGTAACTATTTTAGTCAAGGAAGGCATGAAAGAGAGGATTCAGT 893
Query 882 CTCTAAACAGATTTACTTGACATTTCCATCTGAAAGCTCCTTCACTGATGAAGACGTCTC 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CTCTAAACAGATTTACTTGACATTTCCATCTGAAAGCTCCTTCACTGATGAAGACGTCTC 953
Query 942 AACTTATTTCAGTGATTTTGGACCTGTGGAAGATGTGAGGATTCCATATCAGCAGCAACG 1001
||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct 954 AACCTATTTCAGAGATTTTGGACTTGTGGATGATGTGAGGATTCCATATCAGCAGCAAAG 1013
Query 1002 GATGTTTGGGTTTGTCACTTTTGCCAAGGCTGAAACCGTGAGAACCATATTAGCTCGAGG 1061
||||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1014 GATGTATGGGTTTGTAACTTTTGCTAAGGCTGAAACTGTGAGAACCATATTAGCTCGTGG 1073
Query 1062 AAATCCTCATTTCATCTGTGACTCACGTGTGCTCGTTAAACCATACAAGGAGAAAGGAAA 1121
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AAACCCTCATTTCATATGTGACTCACGTGTGCTCGTTAAACCATACAAGGAGAAAGGAAA 1133
Query 1122 AATCCTTCAAAAGAGGCAGCAGCAGCAACTACACGAGCTGTTGGAGAGAGGGAACTATTC 1181
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1134 AATCCTTCAAAAGAGGCAGCAGCAACAACTACACGAGTTGTTGGAGAGAGGGAACTATTC 1193
Query 1182 ACCTTCTTCAAGTCCTTCTGGAATGGACTCAAGGGAACTATATGAATGTCGCTTAGGACC 1241
||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1194 ACCTTCTTCAAGTCCGTCTGGAAAGGACTCGAGGGAACTATATGAATGTCGCTTAGGACC 1253
Query 1242 AAGGATGTTTTCAAACAAGACACAGGAGATGCTGCGAAGAAAAACCGAGCAAGCTGATTT 1301
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1254 AAGGATGTTTTCAAAGAAGACACAGGAGATGTTGCGAAGAAAAACCGAGCAAGCTGATTT 1313
Query 1302 ACAACAAGCCATAGAA-GTAG 1321
|||||| ||||||||| ||||
Sbjct 1314 ACAACATGCCATAGAACGTAG 1334
Score = 797 bits (431), Expect = 0.0
Identities = 530/576 (92%), Gaps = 14/576 (2%)
Strand=Plus/Plus
Query 1393 CGTAGTCCTTCTATTGGTTCTCCCTCTCATTTTCCGCCTCGATTCAATCATAGTCTTCTC 1452
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1330 CGTAGTCCTTCTATTGGTTCTCCCTCTCATTTCCCACCTCGATTCAATCATAGTCTTCTC 1389
Query 1453 TTTCAATCAGGAAACAACAACGAAGAAATCGTGGAAGGTTGACAGTGGA-AGAGGTGAGA 1511
|||||||||||||||||||||||||||||| ||||||| ||||||| | ||| ||||||
Sbjct 1390 TTTCAATCAGGAAACAACAACGAAGAAATCATGGAAGGC-GACAGTG-ATAGAAGTGAGA 1447
Query 1512 AAGATGTTCAGCAAGTAGCAACCAGCAATGAAGAACGTGGCTACAGTAACGATTTCTACC 1571
||||| |||| ||||||||||||||||| ||||||||||| |||| ||||| |||||||
Sbjct 1448 AAGATCTTCAACAAGTAGCAACCAGCAACGAAGAACGTGGTTACAATAACGGTTTCTACA 1507
Query 1572 AAGGGCAAGAGACGAGTCTGGAGAATACTCTTCCTGATAGCTTGTTTGGTTCCCCaaaaa 1631
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1508 AAGGGCAAGAGACGAGTCTGGAGAATACTCTCCCTGATAGCTTGTTTGGTTCTCCAAAAA 1567
Query 1632 aaTCCGGTGAAACCAACCAAACCGAGTCTGATACCGAGCATAATAA---GGAAGCATCAT 1688
|||| || |||||| ||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1568 AATCTGGCGAAACCTACCAAACCGAGTCTGATACCGAGCATAATAATAAGGAAGCCTCAT 1627
Query 1689 CGGATCAGTTAGCCTAGCCATGGGCAGAGAGAAGCATGTGTATGAGTGAAAGGAAAGGTG 1748
| |||||||||| |||| ||||||||| |||||||||||||||| ||||| ||||||||
Sbjct 1628 CAAATCAGTTAGCGTAGCAATGGGCAGAAAGAAGCATGTGTATGAATGAAAAGAAAGGTG 1687
Query 1749 TAGAAGACTGATAAAAGAAGGAAGTAGAAGAGAAGAATTGTCTATATATAGAAAAAGCTA 1808
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1688 TAGAAGACTGATAAAAGAATGAAGTAGAAGAGAAGAATTGTCTATATATAGTAAAAGCTA 1747
Query 1809 AGAGGTCTTAACATGGAACACAAAAGAGAAAGTTAACGAGAACAGTTTTAGGATTATA-T 1867
||||||| | |||||||||||| |||||| ||||| ||||||||||||||||||||| |
Sbjct 1748 AGAGGTC--A-CATGGAACACAAGAGAGAAGGTTAAAGAGAACAGTTTTAGGATTATAAT 1804
Query 1868 ATCATCTACAATAATAGGATTTTACGACTAATCTC-GACAACATATGAATACTCAGATCA 1926
||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||
Sbjct 1805 ATCATCTACAATAATAGGATTTTACCACTAATCTCAG-CAACATATGAATAC--AGATCA 1861
Query 1927 ACACAGTAACTGAAACTCACAAGTAGGTTTCTTTTT 1962
|||||||||||| |||||||||||||||||||||||
Sbjct 1862 ACACAGTAACTGTAACTCACAAGTAGGTTTCTTTTT 1897
> AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7399151-7402436 FORWARD LENGTH=2221
Length=2221
Score = 531 bits (287), Expect = 1e-149
Identities = 648/814 (80%), Gaps = 57/814 (7%)
Strand=Plus/Plus
Query 883 TCTAAACAGATTTACTTGACATTTCCATCTGAAAGCTCCTTCACTGATGAAGACGTCTC- 941
||||||||||||||||||||||||||| |||| ||||||||||| |||||||| |||||
Sbjct 960 TCTAAACAGATTTACTTGACATTTCCAGCTGACAGCTCCTTCACAGATGAAGATGTCTCC 1019
Query 942 AACTTATTTCAGTGATTTTGGACCTGTGGAAGATGTGAGGATTCCATATCAGCAGCAACG 1001
|| |||||| | |||||||||| ||| ||||||| ||||||||||| |||||| ||||
Sbjct 1020 AA-TTATTTTGGCAATTTTGGACCAGTGCAAGATGTTAGGATTCCATACCAGCAGAAACG 1078
Query 1002 GATGTTTGGGTTTGTCACTTTTG-CCAAGGCTGAAACCGTGAGAACCATATTAGCTC-GA 1059
|||||||||||||||||||||| ||| ||||||| ||||||| |||||| || | ||
Sbjct 1079 GATGTTTGGGTTTGTCACTTTTCTCCACT-CTGAAACTGTGAGAATCATATTGGC-CAGA 1136
Query 1060 GGAAATCCTCATTTCATCTGTGACTCACGTGTGCTCGTTAAACCATACAAGGAGAAAGGA 1119
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 1137 GGAAATCCTCATTTCATCTGTGACTCACGTGTGCTTGTTAAACCGTACAAGGAGAAGGGA 1196
Query 1120 AAAATCCTTCAAAAGAGGCAGCAGCAGCAACTACA-CGAGCTGTTGGAGAGAGGGAACTA 1178
| ||||||| |||||||||||||||| ||||| | | ||| | |||||||||| ||||
Sbjct 1197 AGAATCCTTGAAAAGAGGCAGCAGCAACAACTGCTGC-AGCAGATGGAGAGAGGAAACTT 1255
Query 1179 TTCACCTTCTTCAAGTCCTTCTGGAATGGACTCAAGGGAACTATATGAATGTCG-CTTAG 1237
||| ||| ||||||||| ||||||||||| || ||||| || | ||| | || || |
Sbjct 1256 TTCTCCTGGTTCAAGTCCATCTGGAATGGATTCCAGGGATCTCTTTGATTCTCATCTC-G 1314
Query 1238 GACCAAGGATGTTTTCAAACAAGACACAGGAGATGCTGCGAAGAAAAACCGAGCAAGCTG 1297
||||||||||||||| |||| ||||||||||| || | |||||| | ||||||||||
Sbjct 1315 CACCAAGGATGTTTTCTAACA---CACAGGAGATGATGAGGAGAAAAGCTGAGCAAGCTG 1371
Query 1298 ATTTACAACAAGCCATAGAAGTAGAACTCCAAAGAAGAAGGTTCTTGAATCTGCAATTGC 1357
| | |||||||| |||||| | ||||||| ||||| || |||| |||||| ||||
Sbjct 1372 ACCTGCAACAAGCAATAGAA-T-----TCCAAAGGAGAAGATTTTTGAGTCTGCAGTTGC 1425
Query 1358 CTGACATGGAGAATGAATC-TATTCACCATCACCAGCGTAGTCCTTCTATTGGTTCTCCC 1416
| |||||||| | |||||| | ||| ||||||||||||||||| ||| ||||| || |||
Sbjct 1426 CCGACATGGACAGTGAATCGT-TTCTCCATCACCAGCGTAGTCTTTCCATTGGATCCCCC 1484
Query 1417 -TCTCATTTT-CCGCCTCGAT-TCAATCATAGTCTT-CTCTTTCAATCAGGAAA-CAACA 1471
|| |||||| || ||||| | ||||||| || | | ||||||| ||||| ||| || ||
Sbjct 1485 GTC-CATTTTTCC-CCTCG-TGTCAATCAAAG-CATGCTCTTTCGATCAG-AAAGCACCA 1539
Query 1472 ACGAAGAAATCGTGGAAGGT--TGAC-AGT--GGA-AG-AGG-TGA-GAAA---GA--TG 1517
|| ||| || | |||||| || | | ||| | || ||| | || || |
Sbjct 1540 GTGATGAAGTCTTCGAAGGTAATGGTGATTCAGGACATCAGTCTGAAGCAACCCGAGCTT 1599
Query 1518 TTC--AGC-A-AGTAG-CA-ACCAGCAATGAAGAACGTGGCTACAGTAACGATTTCTACC 1571
||| || | | | | || | || || |||||||||| |||| || | || | || |
Sbjct 1600 TTCTGAGTGATACTGGTCATAACATCAGCCAAGAACGTGGTTACAATAGCCATCT-TAAC 1658
Query 1572 AA-GGGCAAGAGACGAGTCTGGAGAATACTCTTCCTGATAGCTTGTTTGGTTCCCCaaaa 1630
|| ||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||| |
Sbjct 1659 AAAGGGCAAGAGACAAGTCTGGAGAATACTCTGCCTGATAGCTTCTTTGCTTCCCCATCA 1718
Query 1631 aa-aTCCGGTGAAACC-AACCAAACCGAGTCTGA 1662
|| | | ||||||||| ||| | |||||| |||
Sbjct 1719 AAGA-CAGGTGAAACCCAAC-ACCCCGAGTTTGA 1750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99447279645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5