BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474268
Length=2052
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51550.1 | Symbols: | Kelch repeat-containing F-box family ... 3278 0.0
AT1G51540.1 | Symbols: | Galactose oxidase/kelch repeat superf... 641 0.0
> AT1G51550.1 | Symbols: | Kelch repeat-containing F-box family
protein | chr1:19117032-19119371 REVERSE LENGTH=2058
Length=2058
Score = 3278 bits (1775), Expect = 0.0
Identities = 1970/2063 (95%), Gaps = 17/2063 (1%)
Strand=Plus/Plus
Query 1 GAGACAGTGACGAGACAACAATCATCATTCCCAATAATTTCTTCTCACCAAGAATC--AA 58
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1 GAGACAGTGACGAGACAACAATCATCATTCCCAATAA-TTCTTCTCACCAAGAATCTAAA 59
Query 59 ATCCTTCTCCGATTTCCTCTCATGGCGGCGGAATCAACCAGAAACTCATCTCCGCCGTCT 118
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 60 ATCCTTCTCCGATTTCCTCTCATGGCGGCGGAATCAACCAGAAACTCTTCTCCGCCGTCT 119
Query 119 ACTTCTCAG---TCGAGTCCTATAATCAACTTACCCGATGACCATCTCTTAACCATCTTG 175
||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 ACTTCTCAGTCTTCAAGCCCTATAATCAATTTACCCGATGACCATCTCTTAACCATCTTG 179
Query 176 CTTCTTCTTCCCGTAGATTCAATCCTCTCTTTCTCAATGACCTGTAAGAGATACAAGTCT 235
||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||
Sbjct 180 CTTCTTCTTCCCGTAGATTCAATCCTCTCCTTCTCAATGACCTGCAAGCGATACAAGTCT 239
Query 236 CTAGCTTGCTCCGATAGTCTCTGGGAAGCTCTGTGTGAACGAGAATGGGGACCAACTTCT 295
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 CTAGCTTGCTCCGACAGTCTCTGGGAAGCTCTGTGTGAACGAGAATGGGGACCAACATCT 299
Query 296 GTGGATGCTTTGAAGTTGTCATCTTTACGAGATGGGTTTTCATGGATGTTGATGTTTCAG 355
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTAGATGCTTTAAAGTTGTCATCTTTACGAGATGGGTTTTCATGGATGTTGATGTTTCAG 359
Query 356 CGAGTTTATAAGATGGATTCTGTTTGCTGTCACAAGATCTCAGACCCAGATGATGATGAT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGAGTTTATAAGATGGATTCTGTTTGCTGTCACAAGATCTCAGACCCAGATGATGATGAT 419
Query 416 GTGGAATCTTCTTCGTTTCCGATCCCTAGAGCTTCTCATTCTCTCAACTTCGTTAATGAT 475
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAAGAATCTTCTTCGTTTCCGATCCCTAGAGCTTCTCATTCTCTCAACTTCGTTAATGAT 479
Query 476 CATCTTGTTCTCTTCGGTGGTGGTTGTCAAGGAGGACGCCATCTTGATGATACATGGACA 535
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CATCTTGTTCTCTTTGGTGGTGGTTGTCAAGGAGGACGCCATCTTGATGATACATGGACA 539
Query 536 TCATATGTTGATAAGAGCAATCAAAGCATATTGAAATGGAAGAAAGTTGAATCAGGGACT 595
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 TCATATGTTGATAAGAGCAATCAAAGCATATTGAAATGGAAGAAAGTTAAATCAGGGACT 599
Query 596 CCGAGTGGGAGATTCGGACACACCTGCATCGTTATAGGAGAGTATCTACTCTTATTTGGA 655
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 CCAAGTGGGAGATTCGGACACACCTGCATCGTTATAGGCGAGTATCTACTCTTATTTGGA 659
Query 656 GGAATAAATGACCGTGGAGAGCGGTTAAATGATACATGGATCGGTCAAGTCTTTTGCCAT 715
|| |||||||||||||||||| || ||||||| |||||||| |||||||||||||||||
Sbjct 660 GGTATAAATGACCGTGGAGAGAGGCTAAATGACACATGGATTGGTCAAGTCTTTTGCCAC 719
Query 716 GAGGGACTCACTTGGAAACTCCTCAATGTTGGGTCTTTGCAGCGGCCTCGTCCTCCTCCT 775
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAGGGACTCTCTTGGAAACTCCTCAATGTTGGGTCTTTGCAGCGGCCTCGTCCTCCTCCT 779
Query 776 CGTGGTGCTCATTCTGCCTGCTGTATTGCAGAGAAGAAGATGGTTGTACATGGAGGAATC 835
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 780 CGTGGTGCTCATTCCGCCTGTTGTATTGCTGAGAAGAAGATGGTTGTACATGGAGGAATC 839
Query 836 GGGCTGAATGGAGTTAGGCTTGGAGATACATGGATTCTAGAACTTTCTGAAGATTTCA-C 894
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 840 GGGCTGAATGGAGTCAGGCTTGGAGATACATGGATTCTTGAACTTTCTGAAGATTTCAGC 899
Query 895 ATCGGGGACATGGCACATGGTGGAATCTCAACAATCACCGCCACCGCGCTCAGGACATAC 954
|| |||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||
Sbjct 900 -TCTGGGACATGGCACATGGTGGAGTCTCCACAATTACCGCCACCGCGCTCAGGGCATAC 958
Query 955 TTTGACCTGCATTAGAGAAAACCAAGTGGTTCTATTTGGAGGCAGAGGATTAGGATATGA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTTGACCTGCATTAGAGAAAACCAAGTGGTTCTATTTGGAGGCAGAGGATTAGGATATGA 1018
Query 1015 TGTGCTTGATGATGTTTGGATCTTGGATATTCAAGAACAGTGTGAAGAAAAATGGATACA 1074
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1019 TGTGCTTGATGATGTTTGGATCTTGGATATTCAAGAACCGTGTGAAGAAAAATGGATACA 1078
Query 1075 GATATTCTACAATTTCCAGGATGTTCCTGAACACGCATCGTTGCCTCGGGTTGGTCACTC 1134
|||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1079 GATATTCTACGATTTCCAGGATGTTCCCGAATACGCATCGTTGCCTCGGGTTGGTCACTC 1138
Query 1135 GGCGACTCTTGTATTGGGAGGTCGAATCTTGATTTATGGAGGTGAAGATTCTTATAGGCA 1194
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1139 GGCGACTCTTGTATTGGGAGGTCGAATCTTGATTTATGGCGGTGAAGATTCTTATAGGCA 1198
Query 1195 CAGGAAAGATGATTTCTGGGTGTTGGATGTTAAAACCATTCCTTCTTCAGGTTTGAAACC 1254
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1199 TAGGAAAGATGATTTCTGGGTGTTGGATGTTAAAACCATTCCTTCATCAGGTTTGAAACC 1258
Query 1255 TCAAGGGCTTAGCTTAAACGGATCATCAGTGTGGAAAAAGCTTGATCGAATCTCATATGG 1314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACAAGGGCTTAGCTTAAACGGATCATCAGTGTGGAAAAAGCTTGATCGAATCTCATATGG 1318
Query 1315 ACCAAAAAGTCGGTCCTTTCACCGTGCCTGTGTTGATTGTTCAGGGAGATTTGTATATGT 1374
||||||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 1319 ACCAAAAAGTCGGTCTTTTCACCGTGCCTGCGCTGATTGTTCAGGGAGATTTTTATATGT 1378
Query 1375 GTTTGGCGGTATGGTTGACGGTCTTCTTCAGCCTGCAGCATCGTCTGGTCTAAGGTTTGA 1434
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GTTTGGCGGAATGGTTGATGGTCTTCTTCAGCCTGCAGCATCGTCTGGTCTAAGGTTTGA 1438
Query 1435 CGGAGAGCTTTTCATGGTGGAGCTTGTTCTTGGCTTCTCTGACCTAGACCATCAACAAAG 1494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TGGAGAGCTTTTCATGGTGGAGCTTGTTCTTGGCTTCTCTGACCTAGACCATCAACAAAG 1498
Query 1495 ACCTGGAAAAAGCATGTAATAGTGGTGGTTCCTTCTTTTGTAAATTAGCAG-TTTTGTGT 1553
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1499 ACCCGGAAAAAGCATGTAATAGTGGTGGTTCCTTCTTTTGTAAATTAGCAGATTTTGTTT 1558
Query 1554 AAAACCATATCGAGAAACCAGAAATGGAACCCATCATGACCAATTCTCTGATTACAGAGG 1613
|||| |||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 1559 AAAAGCATATCGAGAAACCAGAAATGGAACCCA-CATGATCAAATCTCTGATTACAGAGG 1617
Query 1614 AATACACAGATATGTGTTGAAT-TAGGAACTTTCTTATAGATTCTGATTCAGTTTACAAT 1672
|| ||| | | |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1618 AACACAAA-AGATGTGTTGAAACT-GGAACTTTCTTATAGATTCTGATTCAGTTTACAAT 1675
Query 1673 ATACAAATTTCCATGATAGTGGATGTAAATATGTAATGTAAGGACTTGTTTGAATTAGAC 1732
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 ATACAAAATTCCATGACAGTGGATGTAAATATGTAATGTAAGGACTTGTTTGAATTAGA- 1734
Query 1733 T-CA--GAATGTAGAATTTTGTTCTATCAAAAACAAATTTGCTTGCCTCATGGGTTGAGT 1789
| || ||||| |||||||||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 1735 TACAAAGAATGCAGAATTTTGTGCTATGAAAAACAAACTTGCTTGCCTCATGGGTTGAGT 1794
Query 1790 ATCAATTTGGTTCTCCACATCTCTGCGATGACTTTCCTTGGGGCGGGATCATCTGGACCT 1849
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1795 ATCAATTTGGTTCTCCACATCTCTGCCATGACCTTCCTCGGGGCGGGATCATCTGGACCT 1854
Query 1850 TTGTCTCTTTGCCCTGAGGTGAAGTACAAATGTCCATCCCAATACCCAACCAGCGTTGTT 1909
||||||||||| |||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 1855 TTGTCTCTTTGTCCTGAGGTGAAGTATAACTGTCCATCCCAATACCCAGCCAGCGTTGTC 1914
Query 1910 TTCACACGGTATGGTAATTTCCCAATCACATACCATTTCTTGTATTTAAGTTGAACTGAA 1969
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1915 TTCACACGGTATGGTAATTTCCCAATCACATACCATTTCTTGTATTTAAGTTGAACTGGA 1974
Query 1970 AGATTTCACCAACGAGAACCATCTTTTTGGTTCCAGGATGCTTCTCTGTTGTGCCTCCAA 2029
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1975 AGATTTCACCAACGAGAACCATCTTTTTGGTTTCAGGATGTTTCTCTGTTGTGCCTCCAA 2034
Query 2030 CAATTACAATGGAGTTATTAACG 2052
| |||||||||||||||||||||
Sbjct 2035 CGATTACAATGGAGTTATTAACG 2057
> AT1G51540.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:19115561-19117534 FORWARD LENGTH=1542
Length=1542
Score = 641 bits (347), Expect = 0.0
Identities = 404/431 (94%), Gaps = 5/431 (1%)
Strand=Plus/Minus
Query 1626 TGTGTTG-AATTAGGAACTTTCTTATAGATTCTGATTCAGTTTACAATATACAAATTTCC 1684
||||||| || | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1542 TGTGTTGAAACT-GGAACTTTCTTATAGATTCTGATTCAGTTTACAATATACAAAATTCC 1484
Query 1685 ATGATAGTGGATGTAAATATGTAATGTAAGGACTTGTTTGAATTAG--ACTCAGAATGTA 1742
|||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 1483 ATGACAGTGGATGTAAATATGTAATGTAAGGACTTGTTTGAATTAGATACAAAGAATGCA 1424
Query 1743 GAATTTTGTTCTATCAAAAACAAATTTGCTTGCCTCATGGGTTGAGTATCAATTTGGTTC 1802
||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1423 GAATTTTGTGCTATGAAAAACAAACTTGCTTGCCTCATGGGTTGAGTATCAATTTGGTTC 1364
Query 1803 TCCACATCTCTGCGATGACTTTCCTTGGGGCGGGATCATCTGGACCTTTGTCTCTTTGCC 1862
||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 1363 TCCACATCTCTGCCATGACCTTCCTCGGGGCGGGATCATCTGGACCTTTGTCTCTTTGTC 1304
Query 1863 CTGAGGTGAAGTACAAATGTCCATCCCAATACCCAACCAGCGTTGTTTTCACACGGTATG 1922
||||||||||||| || |||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1303 CTGAGGTGAAGTATAACTGTCCATCCCAATACCCAGCCAGCGTTGTCTTCACACGGTATG 1244
Query 1923 GTAATTTCCCAATCACATACCATTTCT-TGTATTTAAGTTGAACTGAAAGATTTCACCAA 1981
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1243 GTAATTTCCCAATCACATACCATTTCAGTGTATTTAAGTTGAACTGGAAGATTTCACCAA 1184
Query 1982 CGAGAACCATCTTTTTGGTTCCAGGATGCTTCTCTGTTGTGCCTCCAACAATTACAATGG 2041
|||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 1183 CGAGAACCATCTTTTTGGTTTCAGGATGTTTCTCTGTTGTGCCTCCAACGATTACAATGG 1124
Query 2042 AGTTATTAACG 2052
|||||||||||
Sbjct 1123 AGTTATTAACG 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101706304170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5