BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474268 Length=2052 Score E Sequences producing significant alignments: (Bits) Value AT1G51550.1 | Symbols: | Kelch repeat-containing F-box family ... 3278 0.0 AT1G51540.1 | Symbols: | Galactose oxidase/kelch repeat superf... 641 0.0 > AT1G51550.1 | Symbols: | Kelch repeat-containing F-box family protein | chr1:19117032-19119371 REVERSE LENGTH=2058 Length=2058 Score = 3278 bits (1775), Expect = 0.0 Identities = 1970/2063 (95%), Gaps = 17/2063 (1%) Strand=Plus/Plus Query 1 GAGACAGTGACGAGACAACAATCATCATTCCCAATAATTTCTTCTCACCAAGAATC--AA 58 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 1 GAGACAGTGACGAGACAACAATCATCATTCCCAATAA-TTCTTCTCACCAAGAATCTAAA 59 Query 59 ATCCTTCTCCGATTTCCTCTCATGGCGGCGGAATCAACCAGAAACTCATCTCCGCCGTCT 118 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 60 ATCCTTCTCCGATTTCCTCTCATGGCGGCGGAATCAACCAGAAACTCTTCTCCGCCGTCT 119 Query 119 ACTTCTCAG---TCGAGTCCTATAATCAACTTACCCGATGACCATCTCTTAACCATCTTG 175 ||||||||| || || ||||||||||| |||||||||||||||||||||||||||||| Sbjct 120 ACTTCTCAGTCTTCAAGCCCTATAATCAATTTACCCGATGACCATCTCTTAACCATCTTG 179 Query 176 CTTCTTCTTCCCGTAGATTCAATCCTCTCTTTCTCAATGACCTGTAAGAGATACAAGTCT 235 ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| Sbjct 180 CTTCTTCTTCCCGTAGATTCAATCCTCTCCTTCTCAATGACCTGCAAGCGATACAAGTCT 239 Query 236 CTAGCTTGCTCCGATAGTCTCTGGGAAGCTCTGTGTGAACGAGAATGGGGACCAACTTCT 295 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 240 CTAGCTTGCTCCGACAGTCTCTGGGAAGCTCTGTGTGAACGAGAATGGGGACCAACATCT 299 Query 296 GTGGATGCTTTGAAGTTGTCATCTTTACGAGATGGGTTTTCATGGATGTTGATGTTTCAG 355 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GTAGATGCTTTAAAGTTGTCATCTTTACGAGATGGGTTTTCATGGATGTTGATGTTTCAG 359 Query 356 CGAGTTTATAAGATGGATTCTGTTTGCTGTCACAAGATCTCAGACCCAGATGATGATGAT 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CGAGTTTATAAGATGGATTCTGTTTGCTGTCACAAGATCTCAGACCCAGATGATGATGAT 419 Query 416 GTGGAATCTTCTTCGTTTCCGATCCCTAGAGCTTCTCATTCTCTCAACTTCGTTAATGAT 475 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GAAGAATCTTCTTCGTTTCCGATCCCTAGAGCTTCTCATTCTCTCAACTTCGTTAATGAT 479 Query 476 CATCTTGTTCTCTTCGGTGGTGGTTGTCAAGGAGGACGCCATCTTGATGATACATGGACA 535 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 CATCTTGTTCTCTTTGGTGGTGGTTGTCAAGGAGGACGCCATCTTGATGATACATGGACA 539 Query 536 TCATATGTTGATAAGAGCAATCAAAGCATATTGAAATGGAAGAAAGTTGAATCAGGGACT 595 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 540 TCATATGTTGATAAGAGCAATCAAAGCATATTGAAATGGAAGAAAGTTAAATCAGGGACT 599 Query 596 CCGAGTGGGAGATTCGGACACACCTGCATCGTTATAGGAGAGTATCTACTCTTATTTGGA 655 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 600 CCAAGTGGGAGATTCGGACACACCTGCATCGTTATAGGCGAGTATCTACTCTTATTTGGA 659 Query 656 GGAATAAATGACCGTGGAGAGCGGTTAAATGATACATGGATCGGTCAAGTCTTTTGCCAT 715 || |||||||||||||||||| || ||||||| |||||||| ||||||||||||||||| Sbjct 660 GGTATAAATGACCGTGGAGAGAGGCTAAATGACACATGGATTGGTCAAGTCTTTTGCCAC 719 Query 716 GAGGGACTCACTTGGAAACTCCTCAATGTTGGGTCTTTGCAGCGGCCTCGTCCTCCTCCT 775 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GAGGGACTCTCTTGGAAACTCCTCAATGTTGGGTCTTTGCAGCGGCCTCGTCCTCCTCCT 779 Query 776 CGTGGTGCTCATTCTGCCTGCTGTATTGCAGAGAAGAAGATGGTTGTACATGGAGGAATC 835 |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 780 CGTGGTGCTCATTCCGCCTGTTGTATTGCTGAGAAGAAGATGGTTGTACATGGAGGAATC 839 Query 836 GGGCTGAATGGAGTTAGGCTTGGAGATACATGGATTCTAGAACTTTCTGAAGATTTCA-C 894 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 840 GGGCTGAATGGAGTCAGGCTTGGAGATACATGGATTCTTGAACTTTCTGAAGATTTCAGC 899 Query 895 ATCGGGGACATGGCACATGGTGGAATCTCAACAATCACCGCCACCGCGCTCAGGACATAC 954 || |||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||| Sbjct 900 -TCTGGGACATGGCACATGGTGGAGTCTCCACAATTACCGCCACCGCGCTCAGGGCATAC 958 Query 955 TTTGACCTGCATTAGAGAAAACCAAGTGGTTCTATTTGGAGGCAGAGGATTAGGATATGA 1014 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TTTGACCTGCATTAGAGAAAACCAAGTGGTTCTATTTGGAGGCAGAGGATTAGGATATGA 1018 Query 1015 TGTGCTTGATGATGTTTGGATCTTGGATATTCAAGAACAGTGTGAAGAAAAATGGATACA 1074 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1019 TGTGCTTGATGATGTTTGGATCTTGGATATTCAAGAACCGTGTGAAGAAAAATGGATACA 1078 Query 1075 GATATTCTACAATTTCCAGGATGTTCCTGAACACGCATCGTTGCCTCGGGTTGGTCACTC 1134 |||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 1079 GATATTCTACGATTTCCAGGATGTTCCCGAATACGCATCGTTGCCTCGGGTTGGTCACTC 1138 Query 1135 GGCGACTCTTGTATTGGGAGGTCGAATCTTGATTTATGGAGGTGAAGATTCTTATAGGCA 1194 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1139 GGCGACTCTTGTATTGGGAGGTCGAATCTTGATTTATGGCGGTGAAGATTCTTATAGGCA 1198 Query 1195 CAGGAAAGATGATTTCTGGGTGTTGGATGTTAAAACCATTCCTTCTTCAGGTTTGAAACC 1254 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1199 TAGGAAAGATGATTTCTGGGTGTTGGATGTTAAAACCATTCCTTCATCAGGTTTGAAACC 1258 Query 1255 TCAAGGGCTTAGCTTAAACGGATCATCAGTGTGGAAAAAGCTTGATCGAATCTCATATGG 1314 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 ACAAGGGCTTAGCTTAAACGGATCATCAGTGTGGAAAAAGCTTGATCGAATCTCATATGG 1318 Query 1315 ACCAAAAAGTCGGTCCTTTCACCGTGCCTGTGTTGATTGTTCAGGGAGATTTGTATATGT 1374 ||||||||||||||| |||||||||||||| | ||||||||||||||||||| ||||||| Sbjct 1319 ACCAAAAAGTCGGTCTTTTCACCGTGCCTGCGCTGATTGTTCAGGGAGATTTTTATATGT 1378 Query 1375 GTTTGGCGGTATGGTTGACGGTCTTCTTCAGCCTGCAGCATCGTCTGGTCTAAGGTTTGA 1434 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 GTTTGGCGGAATGGTTGATGGTCTTCTTCAGCCTGCAGCATCGTCTGGTCTAAGGTTTGA 1438 Query 1435 CGGAGAGCTTTTCATGGTGGAGCTTGTTCTTGGCTTCTCTGACCTAGACCATCAACAAAG 1494 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 TGGAGAGCTTTTCATGGTGGAGCTTGTTCTTGGCTTCTCTGACCTAGACCATCAACAAAG 1498 Query 1495 ACCTGGAAAAAGCATGTAATAGTGGTGGTTCCTTCTTTTGTAAATTAGCAG-TTTTGTGT 1553 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 1499 ACCCGGAAAAAGCATGTAATAGTGGTGGTTCCTTCTTTTGTAAATTAGCAGATTTTGTTT 1558 Query 1554 AAAACCATATCGAGAAACCAGAAATGGAACCCATCATGACCAATTCTCTGATTACAGAGG 1613 |||| |||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| Sbjct 1559 AAAAGCATATCGAGAAACCAGAAATGGAACCCA-CATGATCAAATCTCTGATTACAGAGG 1617 Query 1614 AATACACAGATATGTGTTGAAT-TAGGAACTTTCTTATAGATTCTGATTCAGTTTACAAT 1672 || ||| | | |||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1618 AACACAAA-AGATGTGTTGAAACT-GGAACTTTCTTATAGATTCTGATTCAGTTTACAAT 1675 Query 1673 ATACAAATTTCCATGATAGTGGATGTAAATATGTAATGTAAGGACTTGTTTGAATTAGAC 1732 ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1676 ATACAAAATTCCATGACAGTGGATGTAAATATGTAATGTAAGGACTTGTTTGAATTAGA- 1734 Query 1733 T-CA--GAATGTAGAATTTTGTTCTATCAAAAACAAATTTGCTTGCCTCATGGGTTGAGT 1789 | || ||||| |||||||||| |||| ||||||||| |||||||||||||||||||||| Sbjct 1735 TACAAAGAATGCAGAATTTTGTGCTATGAAAAACAAACTTGCTTGCCTCATGGGTTGAGT 1794 Query 1790 ATCAATTTGGTTCTCCACATCTCTGCGATGACTTTCCTTGGGGCGGGATCATCTGGACCT 1849 |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct 1795 ATCAATTTGGTTCTCCACATCTCTGCCATGACCTTCCTCGGGGCGGGATCATCTGGACCT 1854 Query 1850 TTGTCTCTTTGCCCTGAGGTGAAGTACAAATGTCCATCCCAATACCCAACCAGCGTTGTT 1909 ||||||||||| |||||||||||||| || |||||||||||||||||| |||||||||| Sbjct 1855 TTGTCTCTTTGTCCTGAGGTGAAGTATAACTGTCCATCCCAATACCCAGCCAGCGTTGTC 1914 Query 1910 TTCACACGGTATGGTAATTTCCCAATCACATACCATTTCTTGTATTTAAGTTGAACTGAA 1969 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1915 TTCACACGGTATGGTAATTTCCCAATCACATACCATTTCTTGTATTTAAGTTGAACTGGA 1974 Query 1970 AGATTTCACCAACGAGAACCATCTTTTTGGTTCCAGGATGCTTCTCTGTTGTGCCTCCAA 2029 |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 1975 AGATTTCACCAACGAGAACCATCTTTTTGGTTTCAGGATGTTTCTCTGTTGTGCCTCCAA 2034 Query 2030 CAATTACAATGGAGTTATTAACG 2052 | ||||||||||||||||||||| Sbjct 2035 CGATTACAATGGAGTTATTAACG 2057 > AT1G51540.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:19115561-19117534 FORWARD LENGTH=1542 Length=1542 Score = 641 bits (347), Expect = 0.0 Identities = 404/431 (94%), Gaps = 5/431 (1%) Strand=Plus/Minus Query 1626 TGTGTTG-AATTAGGAACTTTCTTATAGATTCTGATTCAGTTTACAATATACAAATTTCC 1684 ||||||| || | |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1542 TGTGTTGAAACT-GGAACTTTCTTATAGATTCTGATTCAGTTTACAATATACAAAATTCC 1484 Query 1685 ATGATAGTGGATGTAAATATGTAATGTAAGGACTTGTTTGAATTAG--ACTCAGAATGTA 1742 |||| ||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 1483 ATGACAGTGGATGTAAATATGTAATGTAAGGACTTGTTTGAATTAGATACAAAGAATGCA 1424 Query 1743 GAATTTTGTTCTATCAAAAACAAATTTGCTTGCCTCATGGGTTGAGTATCAATTTGGTTC 1802 ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1423 GAATTTTGTGCTATGAAAAACAAACTTGCTTGCCTCATGGGTTGAGTATCAATTTGGTTC 1364 Query 1803 TCCACATCTCTGCGATGACTTTCCTTGGGGCGGGATCATCTGGACCTTTGTCTCTTTGCC 1862 ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 1363 TCCACATCTCTGCCATGACCTTCCTCGGGGCGGGATCATCTGGACCTTTGTCTCTTTGTC 1304 Query 1863 CTGAGGTGAAGTACAAATGTCCATCCCAATACCCAACCAGCGTTGTTTTCACACGGTATG 1922 ||||||||||||| || |||||||||||||||||| |||||||||| ||||||||||||| Sbjct 1303 CTGAGGTGAAGTATAACTGTCCATCCCAATACCCAGCCAGCGTTGTCTTCACACGGTATG 1244 Query 1923 GTAATTTCCCAATCACATACCATTTCT-TGTATTTAAGTTGAACTGAAAGATTTCACCAA 1981 |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 1243 GTAATTTCCCAATCACATACCATTTCAGTGTATTTAAGTTGAACTGGAAGATTTCACCAA 1184 Query 1982 CGAGAACCATCTTTTTGGTTCCAGGATGCTTCTCTGTTGTGCCTCCAACAATTACAATGG 2041 |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| Sbjct 1183 CGAGAACCATCTTTTTGGTTTCAGGATGTTTCTCTGTTGTGCCTCCAACGATTACAATGG 1124 Query 2042 AGTTATTAACG 2052 ||||||||||| Sbjct 1123 AGTTATTAACG 1113 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101706304170 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5