BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474271
Length=1938
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51580.1 | Symbols: | RNA-binding KH domain-containing prot... 3116 0.0
> AT1G51580.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:19125583-19128161 FORWARD LENGTH=1954
Length=1954
Score = 3116 bits (1687), Expect = 0.0
Identities = 1859/1942 (96%), Gaps = 11/1942 (1%)
Strand=Plus/Plus
Query 1 AAACGACGTCGTTAAGCTTAGTCGACTAATGGAGTTCTCTTCCTCAAAACGTCCGGCGAC 60
||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 2 AAACGACGTTGTTAAGCTTATTCGACTAATGGAGTTCTCTACCTCAAAACGTCCGGCGAC 61
Query 61 GACAGCGACGGCGGCGGAGTCTGTACATTTCCGCCTTCTCTGTCCTGCCTCAAGGACTGG 120
||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||
Sbjct 62 GACAGCGACGGCGGCGGAGTCTGTACATTTCCGTCTTCTCTGTCCGGCAACAAGAACTGG 121
Query 121 TGCAATAATCGGAAAAGGTGGCTCAGTCATTCGCCACCTCCAATCTGTAACCGGTTCAAA 180
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 122 TGCAATAATCGGAAAAGGCGGCTCAGTCATTCGACACCTCCAATCTGTAACCGGTTCAAA 181
Query 181 AATCCGCGTCATCGATGATATTCCGGTTCCTTCAGAAGAGCGTGTAGTGTTGATAATCGC 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 182 AATCCGCGTCATCGATGATATTCCCGTTCCTTCAGAAGAGCGTGTAGTGTTGATAATCGC 241
Query 241 ACCAAGTGGAAAGAAGAAGGACGATTCGAATGTGTGTGATTTGGAAAACCCTAGCTCGGA 300
||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||
Sbjct 242 ACCTAGTGGAAAGAAGAAGGACGAATCGAATGTGTGTGATTCCGAAAACCCTGGCTCTGA 301
Query 301 GGAGCCGAAGCAAGAGAAAGGGAGCGAGTGTGCGGGGACTAGTGGTGGAGATGACGAGGA 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AGAGCCTAAGCAAGAGAAAGGGAGCGAGTGTGCGGGGACTAGTGGTGGAGATGACGAGGA 361
Query 361 AGCGCCGTCGTCGGCGCAGATGGCTTTACTTAGGGTTTTAGAAAGAATAGTGTTTGGTGA 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 362 AGCGCCGTCGTCGGCGCAGATGGCTTTACTTAGGGTTTTCGAAAGAATAGTGTTTGGCGA 421
Query 421 TGATGCTGCTTCTGTTGATGGTGATGAATTGGATAAAGGTGAGAGTGAAAGTTTGTGTAG 480
||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 422 TGACGCTGCTACGGTTGATGGTGATGAATTGGATAAAGGTGAGAGTGAAGGTTTGTGTAG 481
Query 481 GATGATTGTTAGAGGCAATCAAGTAGATTTCTTGATGAGTAAAGGAGGGAAGATGATTCA 540
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 482 GATGATTGTTAGAGGTAATCAAGTAGATTACTTGATGAGTAAAGGAGGGAAGATGATTCA 541
Query 541 GAAGATTAGAGAAGATAGTGGAGCTATTGTTAGGATTTCTTCTACTGATCAGATTCCTCC 600
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 542 GAAGATTAGAGAAGATAGTGGAGCTATTGTTAGGATCTCATCTACTGATCAGATTCCTCC 601
Query 601 TTGTGCTTTTCCTGGAGATGTTGTGATTCAGATGAAGATAACTGGAAAGTTTTCGAGTGT 660
||||||||| ||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 602 TTGTGCTTTCCCTGGAGATGTTGTGATTCAGAT---G--AA-TGGAAAGTTTTCGAGTGT 655
Query 661 GAAGAAGGCGCTTTTGTTGATCACAAACTGTCTTCAAGAAACTGGTGCACCTCCAACTTG 720
||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| ||
Sbjct 656 GAAGAAGGCGCTTTTGTTGGTTACAAACTGTCTTCAAGAAAGTGGTGCACCTCCAACATG 715
Query 721 GGATGAGTGTCCGTTTCCGCAGCCTGGTTATCCGCCGGATTATCATTCTATGGAATATCA 780
||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 716 GGACGAGTGTCCGTTTCCGCAGCCTGGTTATCCGCCTGAGTATCATTCTATGGAGTATCA 775
Query 781 TCCTCAATGGGATCA---TCCTCCTAATCCAATGCCTGAAGACGTTGGACCCTTTAATAG 837
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 776 TCCTCAATGGGATCATCCTCCTCCTAATCCAATGCCTGAAGATGTTGGACCCTTTAATAG 835
Query 838 ACCGGTTGTTGAAGAGGAGGTTGCGTTCAGGCTGTTATGCCCGGCTGATAAAGTTGGAAG 897
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 836 ACCGGTTGTTGAAGAGGAGGTTGCGTTCAGGTTGTTATGCCCGGCTGATAAAGTTGGAAG 895
Query 898 CTTGATTGGGAAAGGTGGAGCTGTGGTTCGGGCTCTGCAAAACGAAAGCGGTGCATCAAT 957
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 896 CTTGATTGGGAAAGGTGGAGCTGTGGTGCGAGCTCTGCAAAACGAAAGCGGTGCGTCAAT 955
Query 958 CAAGGTTTCGGATCCAACTCATGATTCAGAGGAGCGGATTATTGTTATATCGGCACGAGA 1017
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 956 CAAGGTTTCGGATCCAACTCATGATTCAGAGGAGCGGATTATTGTGATATCGGCACGAGA 1015
Query 1018 GAACTTGGAGAGAAGGCACTCTCTTGCTCAAGATGGTGTAATGCGTGTGCATAATCGAAT 1077
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 1016 GAACTTGGAGAGAAGGCACTCTCTTGCCCAAGATGGTGTGATGCGTGTGCATAATAGAAT 1075
Query 1078 CGTTGAGATTGGATTTGAACCTAGTGCTGCAGTTGTTGCCCGGCTTCTTGTACATTCTCC 1137
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1076 TGTTGAGATTGGATTTGAACCTAGTGCTGCTGTTGTTGCCCGGCTTCTTGTACATTCTCC 1135
Query 1138 ATATATTGGACGTCTATTGGGTAAAGGGGGTCATTTGATAAGTGAAATGAGGAGAGCAAC 1197
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ATATATCGGACGTCTATTGGGTAAAGGGGGTCATTTGATAAGTGAAATGAGGAGAGCAAC 1195
Query 1198 TGGTGCTAGCATCCGCGTCTTTGCGAAAGACCAAGCGACAAAGTATGAATCACAACATGA 1257
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1196 TGGTGCTAGCATCCGCGTCTTTGCGAAAGATCAAGCTACAAAGTATGAATCACAACATGA 1255
Query 1258 TGAGATTGTTCAGGTCATTGGCAATTTGAAAACTGTTCAAGATGCTTTGTTCCAAATATT 1317
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGAGATTGTTCAGGTCATTGGTAATTTGAAAACTGTTCAAGATGCTTTGTTCCAAATATT 1315
Query 1318 ATGCAGGCTTCGGGAAGCAATGTTTCCTGGAAGACTTCCCTTTCAAGGACTGGGTGGTCC 1377
||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1316 ATGTAGGCTTCGGGAAGCAATGTTTCCTGGAAGACTTCCTTTTCAAGGAATGGGTGGTCC 1375
Query 1378 ACCTCCGCCGTTCATGGGTCCGTATCCAGAACCGCTTCCTCCATTTGGACCGAGACAATA 1437
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1376 ACCTCCGCCGTTCATGGGTCCGTATCCAGAACCGCCTCCCCCATTTGGACCGAGACAATA 1435
Query 1438 TCCAGCTTCTCCAGATCGTTACCATTCTCCAGTAGGATCATTCCATGAGAGGCATTGTCA 1497
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1436 TCCAGCTTCTCCAGATCGTTACCATTCTCCAGTAGGACCATTCCATGAGAGGCATTGTCA 1495
Query 1498 TGGTCCTGGATTTGATAGGCCACCTGGTCCTGGATTTGACAGGCCACCTTCCCCAATGTC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TGGTCCTGGATTTGATAGGCCACCTGGTCCTGGATTTGACAGGCCACCTTCCCCAATGTC 1555
Query 1558 TTGGACCCCGCAGCCGGGAATCGATGGCCATCCCGGTGGTATGGTTCCTCCTGATGTGAA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 TTGGACCCCGCAGCCGGGAATCGATGGCCATCCCGGTGGTATGGTTCCTCCTGATGTGAA 1615
Query 1618 CCATGGGTTTGCTTTGAGAAATGAGCCCATTGGCAGCGAGAATCCAGCAATGACAAGCGC 1677
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1616 CCATGGATTTGCTTTGAGAAATGAGCCCATTGGCAGCGAGAATCCAGTAATGACAAGTGC 1675
Query 1678 AAATGTGGAGATTGTGATTCCTCAAGCATACTTAGGCCATGTCTATGGTGAGAACTGCAG 1737
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1676 AAATGTGGAGATTGTGATTCCTCAAGCATACTTAGGTCATGTCTATGGTGAGAACTGCAG 1735
Query 1738 TAACCTGAATTACATCAAGCAGGTATCAGGAGCAAATGTGGTTGTGCATGATCCAAAGGC 1797
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1736 TAACCTGAATTACATCAAACAGGTATCAGGAGCGAATGTGGTTGTGCATGATCCAAAGGC 1795
Query 1798 AGGGACTACAGAAGGACTGGTGGTTGTCTCGGGTACATCGGATCAAGCTCACTTTGCTCA 1857
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1796 AGGGACTACAGAAGGACTGGTGGTTGTCTCAGGCACATCGGATCAAGCTCACTTTGCTCA 1855
Query 1858 GAGCCTTCTTCATGCTTTTATTCTCTGTGGTCAATCTTGATTGCTCT-TATGTCAAATTG 1916
|||||||||||||||||||||||||||||||||||||||||||||| | | ||||| ||
Sbjct 1856 AAGCCTTCTTCATGCTTTTATTCTCTGTGGTCAATCTTGATTGCTCTCTTT-TCAAAGTG 1914
Query 1917 TTTAAAATTTTAACATGATAGT 1938
| || |||||||||||||||||
Sbjct 1915 TGTACAATTTTAACATGATAGT 1936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95983442040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5