BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474276
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51620.2 | Symbols: | Protein kinase superfamily protein | ... 1644 0.0
> AT1G51620.2 | Symbols: | Protein kinase superfamily protein
| chr1:19140130-19141787 FORWARD LENGTH=1230
Length=1230
Score = 1644 bits (890), Expect = 0.0
Identities = 1053/1127 (93%), Gaps = 29/1127 (3%)
Strand=Plus/Plus
Query 204 TTC-TTTGCAGGTGATGCAGACGATTCGACTATTGAATATGAACCATATGTGTACATTCC 262
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TTCATTTGC-TGTGATGCAGACGATTCGACTATTGAATATGAACCATATGTGTACATTCC 186
Query 263 AGCGAATAGTTACTCGTATGCCGAGGTTACGAAAATTACAAACAAGTTCAGTAGAGTTCA 322
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 187 AGCGAATAGTTACTCGTATGCCGAGGTTACGAAAATTACAAACAAGTTTAATAGAGTTCA 246
Query 323 TGGCAAAGGAGGGTTTGGTGTAGTTTATCGTGGAGTTTTAAACAAGCAACAAGTAGCAGT 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TGGCAAAGGAGGGTTTGGTGTAGTTTATCGTGGAGTTTTAAACAAGCAACAAGTAGCAGT 306
Query 383 AAAGATGATAAACCGAGCATCCGTCTACAACATTGTACAGTTTACCAAAGAGGTTCATGA 442
||||||| |||||||||| ||| ||||| | | | | || ||||| ||
Sbjct 307 AAAGATGCTAAACCGAGCTTCCATCTAC-A-A---T--A--TT---------GTTCACGA 348
Query 443 CTTTGTAAAAGTTCGTCACAAAAACTTAGTGACCCTCATTGGGTATTGCGATGATGGTGA 502
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct 349 CTTTGTAAAAGTTCGTCACAAAAACTTGGTGAGCCTCATTGGATATTGCGATGATGGTGA 408
Query 503 GCACTTGGCCCTAATCTACGAATTCGTGGCAAATGGAGACTTGAATGATCAACTATCTGG 562
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 409 GCACTTGGCCCTAATCTACGAATTCGTGGCAAATGGTGACTTGAATGATCAACTATCTGG 468
Query 563 GAAGTTTGGTAATGTCCTGAGCTGGGACAGCAGGTTGAAAATCATCATTGGAGTAGCACA 622
||||||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||
Sbjct 469 GAAGTTTGGTAATGTCCCGAGCTGGGAAACCAGGTTGAAAATCATCATAGGAGTAGCACA 528
Query 623 AGGTCTGGAGTATTTGCATAGCGAGTTACGAATCCTTCACAGATATGTTAAGCCGACAAA 682
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 529 AGGTCTGGAGTATTTGCATAGCGAGTTGCGAATCCTTCACCGATATGTTAAGCCGACAAA 588
Query 683 TATCCTACTAGACGAAAACTTTGAAGCGAAATTGGCTGATTTCGGATTGTCTAGATCCTC 742
||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 589 TATCCTACTAGGCGAAAACTTTGAAGCGAAACTGGCTGATTTCGGGCTGTCTAGATCCTC 648
Query 743 CCCAACCAACCCTGACACAGAGGCGTCAAATAAGATTTATGTCAAGCCTGGAAGAGATCC 802
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 649 TCCAACCAACCCTGACATACAAGCGTCAAATAAGATTTATGTCAAGCCTGGAAGAGATCC 708
Query 803 ATATCTCG-ATGACCAATACTTCAACTCGAACTGGTTAACCCAAACGAGCGACATTTATA 861
|||||| | || |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 709 ATATCT-GCATCACCAATACTTCAACTCGAACCGGTTAAACCAAACGAGCGACATTTATA 767
Query 862 GCTTTGGCATTGTTATGTTGGAGATGATAACCAATCAGCCTGTGGTTGACAACAACCGCG 921
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
Sbjct 768 GCTTTGGCATTGTTATGTTGGAGATGATAACCAACCAGCCTGTAGTTGACAACAAGCGTG 827
Query 922 AGAGTCCTCACATTTCAAAATGGGTCGATTTAAAGGTCGCAAAAGGCGATACTCTAGAGA 981
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 828 AGAGTCCTCACATTTCAAAGTGGGTCGATTTAAAGGTCGCGAAAGGCGATACTCTAGAGA 887
Query 982 TTGTTGATCCCAGGCTAAACAATGACTTTGAGC-CTAACTCAGTCAGGAAAGCTATGGAT 1040
||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 888 TTGTTGATCTCAGGCTAAACAATGACTTTGAGCGC-GACTCGGTCAGGAAAGCTATGGAT 946
Query 1041 ATAGCATGCAGTTGTGCAGCTCGTGCTCATAATAGGCCAAGCATGAGCCAGGTTGTTATA 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 ATAGCATGCAGTTGTGCAGCTCGTGCTCATAATAGGCCAAGCATGAGCCAGGTTGTTATA 1006
Query 1101 GAGCTCAATGAGTGTCTAGCCTTAGAGAAGGCTCGAAGTATTGGAAGAACTGGGGAGATA 1160
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 1007 GAGCTCAATGAGTGTCTAGCCTTAGAGATGGCTCGAAGTAATGGAAGAACTGGGGAGACA 1066
Query 1161 ACTCAGACTCAGTGAGCAACA--TGACCATGAGTTCAATTATCTCAACATTTTCATCGTA 1218
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1067 ACTCAGACTCAGTGAACAACAGATGACCATGAGTTCAATTATCTCAACATTTTCATTGTA 1126
Query 1219 TCTTTGCTTACCTCTTTTCTCTCTAAAAGAAGAAAAGACAAATCGTACATTGCATTGTTC 1278
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1127 TCTTTTCTTACCTCTTTTCTCTCTAAAAGAAGAAAAGACAGATCGTACATTGCATTGTTC 1186
Query 1279 AGGCATGGTTGCTGCATTTTGTCCACTTTATAGCTGTTCATTTTCAG 1325
| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1187 ACGCATGGTTGCTGCATTT---CCACTTTATAGCTGTTCATTTTCAG 1230
Score = 231 bits (125), Expect = 1e-59
Identities = 135/140 (96%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 1 GAAAAATTCTGCTGCTCTTTTGTATTTTATGGCGATGGTGTGTATTGGTGTTTCTAAGAA 60
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||
Sbjct 1 GAAAAATTCTGCTGCTCTTTTGTATTTTGTGGCCATGGTGTGTATTGGTGTTTCTAGGAA 60
Query 61 ACAGATAAACCAGTTTGCATTGTAGGCGATGACGGAAGCGACAGGCCTGAGGCGTTTCTT 120
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 61 ACAGATAAACCAGTTTGCATTCTAGGCGATGACAGAAGCGACAGGCCTGAGGCGTTTCTT 120
Query 121 TTCTAAGTTCATTTGCTGTG 140
||||||||||||||||||||
Sbjct 121 TTCTAAGTTCATTTGCTGTG 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210507955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5