BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474278
Length=2052
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51640.1 | Symbols: ATEXO70G2, EXO70G2 | exocyst subunit exo... 3138 0.0
AT1G51645.1 | Symbols: | other RNA | chr1:19149496-19151730 FO... 1219 0.0
> AT1G51640.1 | Symbols: ATEXO70G2, EXO70G2 | exocyst subunit exo70
family protein G2 | chr1:19149761-19151852 REVERSE LENGTH=2092
Length=2092
Score = 3138 bits (1699), Expect = 0.0
Identities = 1944/2062 (94%), Gaps = 18/2062 (1%)
Strand=Plus/Plus
Query 1 GCAAAGCAATGGCTGAAGCAAAGAGACTTGAGAGACTTAAAGCAATGAGAAGTTTATTGA 60
||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GCAAAACAATGGCTGAATCAAAGAGACTTGAGAGGCTTAAAGCAATGAGAAGTTTATTGA 60
Query 61 AGAGTGAGATGGAGAAATCAGAAACCTTTTCATTGGTTCTTAACAAGACTGGATCCAAGA 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGTGAGATGGAGAAATCTGAAACCTTTTCATTGGTTCTTAACAAGACTGGATCCAAGA 120
Query 121 TTAAAGAGATCAACCACAAGTTGTTGTCTTTAGAAGCTGATCTTAAAGTTGAGAGATGGA 180
|| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 TTGAAGAGATCAACCATAAGTTGTCGTCTTTAGAAGCTGATCTTAAAGTTGAGAGATGGA 180
Query 181 AGGCTTCTCCTTTCTTTGATCATATCCGTCACACCATTGCTCCGATATCCGCTGTTTTGA 240
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 AGGCTTCTCCTTTCTCTGATCATATCCGTCACACCATTGCTCCAATATCCGCTGTCCTGA 240
Query 241 GAGTCTTTTCTACGGTTCAAGAGCTTGAGAGATCTCTCGTGTCCTCTGATGGAGTCCTTG 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGTCTTTGCTACGGTTCAAGAGCTTGAGAGATCTCTCGTGTCCTCTGATGGAGTCCTTG 300
Query 301 GTTACGTTTCAGATGTTAAACGTCTTGGTGAAGCGATGAAGCTTCTCTCCAGTAGCTGTG 360
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 GTTATGTTTCGGATGTTAAACGTCTTGGAGAAGCGATGAAGCTTCTCTCCAGTAGCTGTG 360
Query 361 TTCTTGCTCTTAATTGGCTTGAAGATACAATCGAGTTCCTAACCGAAAAGGGAATGCCTG 420
||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct 361 TTCTTGCTCTTAACTGGCTAGAAGATACGATCGAGTACCTAACCGAAAAGGGAATGCCTG 420
Query 421 AAGATCATCCTTGCGGTTTGCGGTTCAAGACTTCCATAGAGCTTCTCCGGGAATTGCAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGATCATCCTTGCGGTTTGCGGTTCAAGACTTCCATAGAGCTTCTCCGGGAATTGCAAA 480
Query 481 TGACCGAGCCTCGTGCTTATCTCAAAGGAGGGATTCTTTACACAGCGTTGAAGAATCTTG 540
|||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 481 TGACCGAGTCTCGTGCTTATCTCAAAGGAGGTATTCTTTACACAGCGCTGAAGAATCTTG 540
Query 541 AAACAGAATTCAAGCGGATTCTAAAAGAGGAGCAGGTTTTGTC-GAAAGTTAACTTGAGA 599
|||||||||||||||||||||| ||||| ||| |||||| || ||| | |||||||||
Sbjct 541 AAACAGAATTCAAGCGGATTCTCCAAGAGAAGCCGGTTTTCTCAGAA-GACAACTTGAGA 599
Query 600 AAGTTGCAGGCTATCATCAAGAGATTACATGCTCACACGCGGTTGAAAAA-CTGTGTATC 658
|||||||||||||||||||||||||||||||||||||||||||| || || ||| ||| |
Sbjct 600 AAGTTGCAGGCTATCATCAAGAGATTACATGCTCACACGCGGTT-AACAAGCTGCGTACC 658
Query 659 TGTTTACATCAAAGTCCGCAC-AACGGTCATTCAGAAACGGTTTGAGATTGGTTATCTGG 717
|||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 659 AGTTTACATCAAAGTCCGCACCAA-GGTCATTCAGAAACGGTTTGAGATTAGTTATCTGG 717
Query 718 AGAAAACAATCACAGAAGCTGATAATGTGCATGATATTGAAGGCGATATAGATCAATGGA 777
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 AGAAAACAATCACAGAAGCTGATAATGTACATGATATTGAAGGCGATATAGATCAATGGA 777
Query 778 GATCGCATATGGAGATAGCTGTGAGAGAGACATATGAGTTTGAGAGTAAGCTCTGCTATG 837
||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 778 GATTGCATATGGAGATAGCTGTGAAAGAGATATACGAGTTTGAGAGTAAGCTCTGCTATG 837
Query 838 ACGTATTTGAAGATGTTGGAGAAGATGTTCCCTCGCGTTGCTTTGGAGAAATAGCTTCAA 897
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 838 ACGTATTTGAAGATATTGGAGAAGATGTTCCCTTGCGTTGCTTTGGAGAAATAGCTTCAA 897
Query 898 ATTCAGTAATCCTTCAGCTTCTCAGATTTGGATCAAGAATCAGCAAATGCAAGAAAGATC 957
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 898 ATTCAGTGATCCTTCAGCTTCTCAGATTTGGATCAAGAATCAGCAAATGCAAGAGAGAGC 957
Query 958 CACCAAAGCT-ACTAAAGCTCTTAGATTGTTTCTCTACAATGGACAACATTCGGATAGAG 1016
|||||||||| | | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 958 CACCAAAGCTGA-TCAAGCTCTTAGATTGTTTCTCTACAATGGACAACTTTCGGATAGAG 1016
Query 1017 TTTAACCGGCTATTTCAAGGGGAACAGTGTTCAGAGATACGCAGAGTTACCCGAGAGCTA 1076
|||||| ||||||||| ||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1017 TTTAACAGGCTATTTCGAGGGGAACAATGTTCAGAGATACGCAGAGTTACACGGGAGCTA 1076
Query 1077 ATTAACAATCTTGTTAAGGGTGTCTGCGAAATCTTCTGGGAGTTACCTTGTCAGGTGGAG 1136
|| | |||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||
Sbjct 1077 ATCAGCAATCTCGTTAAGGGTGTCTCCGAGATCTTCTGGGAGTTACCTTGTCAGGTAGAG 1136
Query 1137 CTACAGAGACCAAATTGCCCACCTCTTGATGGAGGTGTCCCGAGGCTTGTTAGCGTTGTC 1196
||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct 1137 CTACAGAGACCAAATTGCCCACCTCTTGATGGAGGTGTCCCAAAGCTTGTAAGCGTTGTG 1196
Query 1197 ACTGAGTATTGCAACAAGCTACTGGGGAACAACAACAAGCCAACCTTGTCGAAGATTCTC 1256
|||||||| |||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 1197 ACTGAGTACTGCAACAAGCTACTGGGGAACAACAACAAGCCAATCTTGTCGAAGGTCCTA 1256
Query 1257 GAGATTGATTTGGGATGGAAAAACGCAAAGTATCAAGAAGAGCTTCTCACAGGTCACATC 1316
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GAAATTGATTTGGGATGGAAGAACGCAAAGTATCAAGAAGAGCTTCTCACAGGTCACATC 1316
Query 1317 TACAACATACTGAGAGAGATTGCTTTGAACTTGGACGCGTGGTCGAGTTCCAACAAAGAA 1376
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1317 TACAACATACTGAGAGAGATTGCTTTGAACTTGGACGCATGGTCAAGTTCCAACAAAGAA 1376
Query 1377 ACCGCTCTTTCTTGCATCTTTATGATGAACAATCACTCCCATTTCTGCGGTTTGAGAGAG 1436
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1377 ACCGCTCTTTCTTGCATCTTTATGATGAACAATCACTCCCATTTCTGCGGCTTGAGAGAG 1436
Query 1437 ACTCATCTCGGGGAAATGATGGGAGAGTCTTGGTTAAACGCACATGAGCAGTACAGAGAC 1496
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1437 ACTTATCTCGGGGAAATGATGGGAGAGTCTTGGTTAAACGCACACGAGCAGTACAGAGAC 1496
Query 1497 TATTACGCTGCACTATATGTCAAAGAAAGCTGGGGAAATCTCTTGTCTCTACTCACCACC 1556
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1497 TATTACGCTGCACTTTATGTCAAAGAAAGCTGGGGACATCTCTTGTCTCTACTCAC-A-- 1553
Query 1557 AACAAACCCCAAACCACTTC-T--tcatcatcatcatcatcagaatcatcTCCTGTGAAA 1613
|||||| | ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1554 AACAAAGCTCAAACCACTTCATCATCATCATCATCATCATCAGAATCATCTCCTGTGAAA 1613
Query 1614 AGAAAACGAGCCCGTGAGTCGATCAAACGAACATTACAAGCATTTTCTAAAGGCTTTGAT 1673
||||||||||||||||||| || || |||||||||||||| |||| |||||| ||||||
Sbjct 1614 GGAAAACGAGCCCGTGAGTCCATTAAGCGAACATTACAAGCGTTTTGTAAAGGATTTGAT 1673
Query 1674 GAGATATACACAAAGCAAGCAAATTGGGTTGTTGAGGACGACAAGTTGGCATGGAAGATA 1733
|||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1674 GAGATATACACAAAGCAATCAAATTGGGTTGTTGAGGATGACAAGTTGGTATGGAAGATA 1733
Query 1734 TGTCAAGCAATGGTGAAAACAGTTGTGCCAAGATACAAGAGTTACCTACAAAGTTACATA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1734 TGTCAAGCAATGGTGAAAACAGTTGTGCCAAGATACAAGAGTTACCTACAAAGCTACATA 1793
Query 1794 AAGCTTCTAGTCGAAGAAGATCCTACAAGTGATAGTAAGCATTTATATTATAATCCAAAG 1853
||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1794 AAGCTTCTAGTAGAAGAAGATCCTACGAGTGATAGTAAGCATTTATATTATACTCCAAAG 1853
Query 1854 GGTTTAGAGATGAAACTGAAGACAATGTTTCagaagaaagaagagacagagaagagagac 1913
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1854 GGTTTAGAGATGAAGCTGAAGACAATGTTTCAGAAGAAAGAAGAAACAGAGAAGAGAGAC 1913
Query 1914 aaagagTCTCACTTTGTGAACAAAGTGATGGATTTGGAGATTACTCAGAATTCTCACTTG 1973
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1914 AAAGATTCTCACTTTGTGAACAAAGTGATGGATTTGGAGATTACTCAGAATTCTCGCTCG 1973
Query 1974 ACATTAGAAGCTATATGATAATACTTAGACAAGATCACTAAATTA--CAGC-CGTTTCTT 2030
|||||||||||||||||||||||||||||||||||||| ||| || || | ||||||||
Sbjct 1974 ACATTAGAAGCTATATGATAATACTTAGACAAGATCACGAAACTAGACA-CTCGTTTCTT 2032
Query 2031 GGTGAAGCTTAGCCAAACATAG 2052
||||||||||||| |||||||
Sbjct 2033 AGTGAAGCTTAGCCTAACATAG 2054
> AT1G51645.1 | Symbols: | other RNA | chr1:19149496-19151730
FORWARD LENGTH=1514
Length=1514
Score = 1219 bits (660), Expect = 0.0
Identities = 756/802 (94%), Gaps = 8/802 (1%)
Strand=Plus/Minus
Query 810 TATGAGTTTGAGAGTAAGCTCTGCTATGACGTATTTGAAGATGTTGGAGAAGATGTTCCC 869
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 926 TATGAGTTTGAGAGTAAGCTCTGCTATGACGTATTTGAAGATATTGGAGAAGATGTTCCC 867
Query 870 TCGCGTTGCTTTGGAGAAATAGCTTCAAATTCAGTAATCCTTCAGCTTCTCAGATTTGGA 929
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 866 TTGCGTTGCTTTGGAGAAATAGCTTCAAATTCAGTGATCCTTCAGCTTCTCAGATTTGGA 807
Query 930 TCAAGAATCAGCAAATGCAAGAAAGATCCACCAAAGCT-ACTAAAGCTCTTAGATTGTTT 988
|||||||||||||||||||||| ||| ||||||||||| | | |||||||||||||||||
Sbjct 806 TCAAGAATCAGCAAATGCAAGAGAGAGCCACCAAAGCTGA-TCAAGCTCTTAGATTGTTT 748
Query 989 CTCTACAATGGACAACATTCGGATAGAGTTTAACCGGCTATTTCAAGGGGAACAGTGTTC 1048
|||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 747 CTCTACAATGGACAACTTTCGGATAGAGTTTAACAGGCTATTTCGAGGGGAACAATGTTC 688
Query 1049 AGAGATACGCAGAGTTACCCGAGAGCTAATTAACAATCTTGTTAAGGGTGTCTGCGAAAT 1108
|||||||||||||||||| || |||||||| | |||||| ||||||||||||| ||| ||
Sbjct 687 AGAGATACGCAGAGTTACACGGGAGCTAATCAGCAATCTCGTTAAGGGTGTCTCCGAGAT 628
Query 1109 CTTCTGGGAGTTACCTTGTCAGGTGGAGCTACAGAGACCAAATTGCCCACCTCTTGATGG 1168
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 627 CTTCTGGGAGTTACCTTGTCAGGTAGAGCTACAGAGACCAAATTGCCCACCTCTTGATGG 568
Query 1169 AGGTGTCCCGAGGCTTGTTAGCGTTGTCACTGAGTATTGCAACAAGCTACTGGGGAACAA 1228
||||||||| | |||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 567 AGGTGTCCCAAAGCTTGTAAGCGTTGTGACTGAGTACTGCAACAAGCTACTGGGGAACAA 508
Query 1229 CAACAAGCCAACCTTGTCGAAGATTCTCGAGATTGATTTGGGATGGAAAAACGCAAAGTA 1288
||||||||||| |||||||||| | || || ||||||||||||||||| |||||||||||
Sbjct 507 CAACAAGCCAATCTTGTCGAAGGTCCTAGAAATTGATTTGGGATGGAAGAACGCAAAGTA 448
Query 1289 TCAAGAAGAGCTTCTCACAGGTCACATCTACAACATACTGAGAGAGATTGCTTTGAACTT 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 TCAAGAAGAGCTTCTCACAGGTCACATCTACAACATACTGAGAGAGATTGCTTTGAACTT 388
Query 1349 GGACGCGTGGTCGAGTTCCAACAAAGAAACCGCTCTTTCTTGCATCTTTATGATGAACAA 1408
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GGACGCATGGTCAAGTTCCAACAAAGAAACCGCTCTTTCTTGCATCTTTATGATGAACAA 328
Query 1409 TCACTCCCATTTCTGCGGTTTGAGAGAGACTCATCTCGGGGAAATGATGGGAGAGTCTTG 1468
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 327 TCACTCCCATTTCTGCGGCTTGAGAGAGACTTATCTCGGGGAAATGATGGGAGAGTCTTG 268
Query 1469 GTTAAACGCACATGAGCAGTACAGAGACTATTACGCTGCACTATATGTCAAAGAAAGCTG 1528
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 267 GTTAAACGCACACGAGCAGTACAGAGACTATTACGCTGCACTTTATGTCAAAGAAAGCTG 208
Query 1529 GGGAAATCTCTTGTCTCTACTCACCACCAACAAACCCCAAACCACTTC-T--tcatcatc 1585
|||| ||||||||||||||||||| | |||||| | ||||||||||| | ||||||||
Sbjct 207 GGGACATCTCTTGTCTCTACTCAC-A--AACAAAGCTCAAACCACTTCATCATCATCATC 151
Query 1586 atcatcatcagaatcatcTCCT 1607
||||||||||||||||||||||
Sbjct 150 ATCATCATCAGAATCATCTCCT 129
Score = 896 bits (485), Expect = 0.0
Identities = 558/593 (94%), Gaps = 6/593 (1%)
Strand=Plus/Minus
Query 124 AAGAGATCAACCACAAGTTGTTGTCTTTAGAAGCTGATCTTAAAGTTGAGAGATGGAAGG 183
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1513 AAGAGATCAACCATAAGTTGTCGTCTTTAGAAGCTGATCTTAAAGTTGAGAGATGGAAGG 1454
Query 184 CTTCTCCTTTCTTTGATCATATCCGTCACACCATTGCTCCGATATCCGCTGTTTTGAGAG 243
|||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1453 CTTCTCCTTTCTCTGATCATATCCGTCACACCATTGCTCCAATATCCGCTGTCCTGAGAG 1394
Query 244 TCTTTTCTACGGTTCAAGAGCTTGAGAGATCTCTCGTGTCCTCTGATGGAGTCCTTGGTT 303
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 TCTTTGCTACGGTTCAAGAGCTTGAGAGATCTCTCGTGTCCTCTGATGGAGTCCTTGGTT 1334
Query 304 ACGTTTCAGATGTTAAACGTCTTGGTGAAGCGATGAAGCTTCTCTCCAGTAGCTGTGTTC 363
| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1333 ATGTTTCGGATGTTAAACGTCTTGGAGAAGCGATGAAGCTTCTCTCCAGTAGCTGTGTTC 1274
Query 364 TTGCTCTTAATTGGCTTGAAGATACAATCGAGTTCCTAACCGAAAAGGGAATGCCTGAAG 423
|||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1273 TTGCTCTTAACTGGCTAGAAGATACGATCGAGTACCTAACCGAAAAGGGAATGCCTGAAG 1214
Query 424 ATCATCCTTGCGGTTTGCGGTTCAAGACTTCCATAGAGCTTCTCCGGGAATTGCAAATGA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 ATCATCCTTGCGGTTTGCGGTTCAAGACTTCCATAGAGCTTCTCCGGGAATTGCAAATGA 1154
Query 484 CCGAGCCTCGTGCTTATCTCAAAGGAGGGATTCTTTACACAGCGTTGAAGAATCTTGAAA 543
||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1153 CCGAGTCTCGTGCTTATCTCAAAGGAGGTATTCTTTACACAGCGCTGAAGAATCTTGAAA 1094
Query 544 CAGAATTCAAGCGGATTCTAAAAGAGGAGCAGGTTTTGTC-GAAAGTTAACTTGAGAAAG 602
||||||||||||||||||| ||||| ||| |||||| || ||| | ||||||||||||
Sbjct 1093 CAGAATTCAAGCGGATTCTCCAAGAGAAGCCGGTTTTCTCAGAA-GACAACTTGAGAAAG 1035
Query 603 TTGCAGGCTATCATCAAGAGATTACATGCTCACACGCGGTTGAAAAA-CTGTGTATCTGT 661
||||||||||||||||||||||||||||||||||||||||| || || ||| ||| | ||
Sbjct 1034 TTGCAGGCTATCATCAAGAGATTACATGCTCACACGCGGTT-AACAAGCTGCGTACCAGT 976
Query 662 TTACATCAAAGTCCGCAC-AACGGTCATTCAGAAACGGTTTGAGATTGGTTAT 713
|||||||||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct 975 TTACATCAAAGTCCGCACCAA-GGTCATTCAGAAACGGTTTGAGATTAGTTAT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101706304170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5