BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474279

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51650.1 | Symbols:  | ATP synthase epsilon chain, mitochond...   592    1e-168


> AT1G51650.1 | Symbols:  | ATP synthase epsilon chain, mitochondrial 
| chr1:19152615-19153929 FORWARD LENGTH=566
Length=566

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 387/419 (92%), Gaps = 5/419 (1%)
 Strand=Plus/Plus

Query  1    AAGATCGGAGATGGCATCGAATGCGGCGGTTCCGTTTTGGAGAGCGGCGGGGATGACTTA  60
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  56   AAGATCGGAGATGGCATCGAATGCGGCGGTTCCGTTCTGGAGAGCGGCGGGGATGACATA  115

Query  61   TATATCGTATTCAAACATCTGTGCGAATATCGTGAGGAATTGCCTCAAGGAGCCACACAA  120
            ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct  116  TATATCGTATTCAAACATCTGTGCGAATATCGTGAGGAACTGTCTCAAGGAGCCACACAA  175

Query  121  AGCTGAAGCCCTAACTCGCGAGAAGGTTCACTTCTCTCTTTCCAAATGGGCTGATGGAAA  180
            ||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  176  AGCTGAAGCTCTTACTCGCGAGAAGGTTCACTTCTCTCTCTCCAAATGGGCTGATGGAAA  235

Query  181  GCCCCAGAAACCTGTTTTGCGGTCAGATACACCTGAAGTTTGA-GATCAAGTTTGAGCTA  239
            ||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||||| 
Sbjct  236  GCCCCAGAAACCTGTTTTGCGGTCAGACACACCTGAAGTTTGAAG-TCAACTTTGAGCTT  294

Query  240  ATGTGCCTAAGGGATTCAAAAGTAACTGTGTTACCAAGATTTGTTATCTTTTTATTGTCA  299
            |||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct  295  ATGTTCTTAAGGGATTCAAAAGTAACTGAGTTACCAAGATTTGTTTTCTTTTTATTGTCA  354

Query  300  GCAATGGACCTTGAGTGAGAAACTCATTTCCAATCATAATAATGACACATTGAGGCTTAT  359
             ||||||| ||||||||| |||||||||||| ||||||||||||||||| |||| ||| |
Sbjct  355  ACAATGGAGCTTGAGTGAAAAACTCATTTCCGATCATAATAATGACACACTGAGTCTTGT  414

Query  360  GTATCTGTTTTCTTGTTTTGCATCTATTATGTTTCACTTTTTGTATGCAAATAATCAAA  418
            |||||| ||||||| |||||| |  ||| ||||||||||||||||||| || ||| |||
Sbjct  415  GTATCTCTTTTCTTCTTTTGC-T--ATTCTGTTTCACTTTTTGTATGCGAACAATGAAA  470


 Score = 87.9 bits (47),  Expect = 8e-17
 Identities = 53/56 (95%), Gaps = 0/56 (0%)
 Strand=Plus/Plus

Query  419  TTGATTGTTACAGAACAGTGAGAATAGCATAAAATTAAGCACATGTGTGGAGAATC  474
            |||||||||||||||||||||||||||||||||| |||||||||  ||||||||||
Sbjct  511  TTGATTGTTACAGAACAGTGAGAATAGCATAAAACTAAGCACATACGTGGAGAATC  566



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5