BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474280
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51660.1 | Symbols: ATMKK4, MKK4, ATMEK4 | mitogen-activated... 2056 0.0
AT3G21220.1 | Symbols: ATMKK5, ATMAP2K_ALPHA, MAP2K_A, MKK5, AT... 780 0.0
> AT1G51660.1 | Symbols: ATMKK4, MKK4, ATMEK4 | mitogen-activated
protein kinase kinase 4 | chr1:19154323-19155947 FORWARD
LENGTH=1625
Length=1625
Score = 2056 bits (1113), Expect = 0.0
Identities = 1290/1371 (94%), Gaps = 29/1371 (2%)
Strand=Plus/Plus
Query 177 AGCGATGAGACCGATTCAATCGCCTCCAGGAGTTTCCGTTCCGGTGAAAAGCCGTCCTCG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 249 AGCGATGAGACCGATTCAATCGCCTCCAGGAGTTTCCGTTCCGGTGAAAAGCCGTCCCCG 308
Query 237 TCGCCGTCCTGATCTTACCTTACCGCTTCCTCAACGCGATGTTTCTCTCGCTGTACCTCT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TCGCCGTCCTGATCTTACCTTACCGCTTCCTCAACGCGATGTTTCTCTCGCTGTACCTCT 368
Query 297 CCCTCTCCCACCTACTTCCGGTGGATCTGCGCCGTCTTCTGGTGG-T-T-CAG-CGTCTT 352
||||||||||||||||||||||| | | || | | ||| |||| | | | | ||||||
Sbjct 369 TCCTCTCCCACCTACTTCCGGTGG-T-TCCGGTGGC-TCTAGTGGATCTGC-GCCGTCTT 424
Query 353 C----AGCTC--CG---TCGACGAACACTAACAGCTCC-TCAGAATCGAAGAACTATTCG 402
| | || || || |||||||||||||||||| | |||| ||||||||||||||
Sbjct 425 CTGGTGGTTCGGCGTCTTCAACGAACACTAACAGCTCCAT-AGAAGCGAAGAACTATTCG 483
Query 403 GATTTAGTGAGAGGTAACCGGATCGGAAGCGGAGCTGGTGGAACGGTTTACAAAGTGGTT 462
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||
Sbjct 484 GATTTAGTGAGAGGTAACCGTATCGGAAGCGGAGCAGGTGGAACGGTATACAAAGTGATT 543
Query 463 CACCGTCCGAGTTCTCGTCTATACGCACTCAAGGTGATATACGGTAACCACGAGGAGACA 522
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 544 CACCGTCCGAGTTCTCGTCTATATGCACTTAAGGTGATATACGGTAACCACGAGGAGACT 603
Query 523 GTGAGACGTCAGATCTGTAGAGAGATCGAGATTTTGCGAGATGTGAATCATCCAAACGTT 582
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 604 GTGAGACGTCAGATCTGTAGAGAGATCGAGATTTTACGAGATGTGAATCATCCAAACGTT 663
Query 583 GTGAAATGTCACGAGATGTTTGATCAGAACGGTGAGATCCAGGTTTTGCTTGAGTTTATG 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GTGAAATGTCACGAGATGTTTGATCAGAACGGTGAGATCCAGGTTTTGCTTGAGTTTATG 723
Query 643 GATAAAGGTTCTTTAGAAGGTGCTCATGTGTGGAAAGAGCAACAATTAGCTGATCTATCT 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GATAAAGGTTCTTTAGAAGGTGCTCATGTGTGGAAAGAGCAACAATTAGCTGATCTATCT 783
Query 703 CGTCAGATTCTTAGTGGTTTAGCTTATCTCCATAGCCGTCACATAGTTCATCGTGATATC 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 CGTCAGATTCTTAGTGGTTTAGCTTATCTCCATAGCCGTCACATAGTTCATCGTGATATC 843
Query 763 AAACCATCGAATCTTTTGATAAACTCTGCTAAAAACGTTAAGATTGCAGATTTTGGAGTG 822
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 844 AAACCATCGAATCTTTTGATAAACTCTGCTAAAAACGTTAAGATTGCTGATTTTGGAGTT 903
Query 823 AGTAGGATCTTGGCTCAGACTATGGATCCGTGTAATTCATCTGTTGGAACCATTGCTTAT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AGTAGGATCTTGGCTCAGACTATGGATCCGTGTAATTCATCTGTTGGAACCATTGCTTAT 963
Query 883 ATGAGTCCTGAGAGGATTAACACTGATTTGAATCAGGGTTTGTATGATGGTTATGCTGGT 942
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 964 ATGAGTCCTGAGAGGATTAACACTGATTTGAATCAGGGAAAGTATGATGGTTATGCTGGA 1023
Query 943 GATATTTGGAGCTTAGGTGTTAGCATTTTGGAGTTTTACTTGGGGAGGTTTCCTTTCCCT 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GATATTTGGAGCTTAGGTGTTAGCATTTTGGAGTTTTACTTGGGGAGGTTTCCTTTCCCT 1083
Query 1003 GTGAGTAGACAAGGTGATTGGGCAAGTCTTATGTGTGCCATCTGTATGTCTCAGCCTCCG 1062
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1084 GTGAGTAGACAAGGTGATTGGGCTAGTCTTATGTGTGCCATTTGTATGTCTCAGCCTCCA 1143
Query 1063 GAAGCTCCACCTACCGCGTCGCCGGAGTTCCGGCATTTTATCTCGTGTTGCTTGCAGAGA 1122
||||||||| | || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1144 GAAGCTCCAGCGACTGCGTCGCCGGAGTTTCGGCATTTTATCTCGTGTTGCTTGCAGAGA 1203
Query 1123 GAACCGGGGAAAAGGAGAAGTGCGATGCAGCTATTGCAGCATCCTTTCATATTAAGAGCA 1182
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1204 GAACCGGGGAAAAGGAGGAGTGCTATGCAGCTATTGCAGCATCCTTTCATATTAAGAGCA 1263
Query 1183 AGTCCGAACCAGAACAGGTCTCCTCAGAATCTACATCAACTCTTGCCTCCTCCTCGTCCT 1242
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AGTCCGAGCCAGAACAGGTCTCCTCAGAATCTACATCAACTCTTGCCTCCTCCTCGTCCT 1323
Query 1243 CTGTCCTCGTCTTCTTCTCCAACCACATAGCGTTTTCTCTCCTCTCCCCTTCATCAACTT 1302
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1324 CTGTCCTCGTCTTCTTCTCCAACCACATAGCGTTTTCTCTCTTCTTCCCTTCATCAACTC 1383
Query 1303 ACATTTTTTCCTGTTACTGTTCTTGTTGAGTCT-TTGTCCAATTTTTGCGCTAATCAAGG 1361
| ||||||| ||||||| | || |||||||| ||||||||||||| |||||||| ||
Sbjct 1384 ATATTTTTTG-TGTTACTACTGTTCTTGAGTCTGTTGTCCAATTTTTT-GCTAATCATGG 1441
Query 1362 AGGGTCTCTGAATCTTACATTAATTAAGGAGTAAAAAACTCGAGAAAGGGTTTATTGGGA 1421
||||||||||||| ||||||| |||| |||||||||||||||||| ||||||| ||||||
Sbjct 1442 AGGGTCTCTGAATTTTACATTTATTAGGGAGTAAAAAACTCGAGAGAGGGTTT-TTGGGA 1500
Query 1422 TTATTGTTTTCTAGAAAGATAAA-GAGAACAAT-A-AAT-T-CTTATGCTTATGATGGTG 1476
|||||||||||||||||| |||| ||||||||| | ||| | ||||||||||||||||||
Sbjct 1501 TTATTGTTTTCTAGAAAGGTAAAAGAGAACAATGATAATATTCTTATGCTTATGATGGTG 1560
Query 1477 CATGTATCCCCAATGTAGCTTTCTTGAATTTTTCATAAAAGTTTTTGCCTT 1527
|||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1561 CATGTATCCCCAATGTAGCTTTGTTGAATTTT-CATAAAAGTTTTTGCCTT 1610
Score = 200 bits (108), Expect = 3e-50
Identities = 168/193 (87%), Gaps = 19/193 (10%)
Strand=Plus/Plus
Query 1 TCAGTGTCCTTTCAATTTCTTTCGACGAACCTTCATTTCTC-A---------ATTTTGAT 50
||||||||||||||||||||||||||||| ||||||||||| | ||||||||
Sbjct 10 TCAGTGTCCTTTCAATTTCTTTCGACGAAACTTCATTTCTCAATTTCTTTTGATTTTGAT 69
Query 51 CGCTTCGAAGAACGAATCAATATAAGCCTG-C-C--ACAAACCCTAGAATACGACAACGC 106
||||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||
Sbjct 70 CGCTTCGAAGAACGAATCAATTTAAGCCTGCCACAAACAAACCCTAGAATACGACAACGC 129
Query 107 ACGACGACGAAG---TCGAAGAAGACGACTACTATAAAACGACGAAGATAAATAACTTCA 163
|||||||||||| ||||||||||| ||||||||||| |||||||||| | || |||||
Sbjct 130 ACGACGACGAAGAAGTCGAAGAAGACTACTACTATAAA-CGACGAAGATCATTA-CTTCA 187
Query 164 ATCTCCAATCGAG 176
|||| ||||||||
Sbjct 188 ATCTTCAATCGAG 200
> AT3G21220.1 | Symbols: ATMKK5, ATMAP2K_ALPHA, MAP2K_A, MKK5,
ATMEK5, MEK5 | MAP kinase kinase 5 | chr3:7445757-7447351 FORWARD
LENGTH=1595
Length=1595
Score = 780 bits (422), Expect = 0.0
Identities = 618/712 (87%), Gaps = 16/712 (2%)
Strand=Plus/Plus
Query 418 AACCGGATCGGAAGCGGAGCTGGTGGAACGGTTTACAAAGTGGTTCAC-CGTCCGA-GTT 475
||||| |||||||||||||| || ||||||||||||||||| | ||| | ||||| | |
Sbjct 380 AACCGAATCGGAAGCGGAGCCGGAGGAACGGTTTACAAAGTAATCCACAC-TCCGACG-T 437
Query 476 CTCGT-CTATACGCACTCAAGGTGATATACGGTAACCACGAGGAGACAGTGAGACGTCAG 534
| ||| || | ||| ||||| ||||| ||||| |||||||| || || ||||||||||||
Sbjct 438 CACGTCCT-TTCGCTCTCAAAGTGATTTACGGAAACCACGAAGATACCGTGAGACGTCAG 496
Query 535 ATCTGTAGAGAGATCGAGATTTTGCG-AGATG-TGAATCATCCAAACGTTGTGAAATGTC 592
|||||||||||||||||||| || | || || || ||||||||||||||||||||||||
Sbjct 497 ATCTGTAGAGAGATCGAGATCTTAAGAAG-TGTTG-ATCATCCAAACGTTGTGAAATGTC 554
Query 593 ACGAGATGTTTGATCAGAACGGTGAGATCCAGGTTTTGCTTGAGTTTATGGATAAAGGTT 652
|||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
Sbjct 555 ACGATATGTTTGATCATAACGGTGAGATCCAGGTTTTGCTTGAGTTTATGGATCAAGGAT 614
Query 653 CT-TTAGAAGGTGCTCATGTGTGGAAAGAGCAACAATTAGCTGATCTATCTCGTCAGATT 711
|| || ||||| |||||| | ||| |||| || ||||||||||||| ||||||||||||
Sbjct 615 CTCTT-GAAGGAGCTCATATATGGCAAGAACAGGAATTAGCTGATCTCTCTCGTCAGATT 673
Query 712 CTTAGTGGTTTAGCTTATCTCCATAGCCGTCACATAGTTCATCGTGATATCAAACCATCG 771
|||||||| ||||||||||| ||| | ||||| || |||||||||||||||||||| |||
Sbjct 674 CTTAGTGGATTAGCTTATCTTCATCGTCGTCATATCGTTCATCGTGATATCAAACCTTCG 733
Query 772 AATCTT-TTGATAAACTCTGCTAAAAACGTTAAGATTGCAGATTTTGGAGTGAGTAGGAT 830
|||||| || |||||||| |||||||| || || ||||| |||||||| |||||||||||
Sbjct 734 AATCTTCTT-ATAAACTCAGCTAAAAATGTGAAAATTGCTGATTTTGGTGTGAGTAGGAT 792
Query 831 CTTGGCTCAGACTATGGATCCGTGTAATTCATCTGTTGGAACCATTGCTTATATGAGTCC 890
|||||| || || |||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 793 CTTGGCACAAACAATGGATCCTTGTAATTCATCTGTTGGTACTATTGCTTATATGAGTCC 852
Query 891 TGAGAGGATTAACACTGATTTGAATCAGGGTTTGT-ATGATGGTTATGCTGGTGATATTT 949
|||||||||||| |||||||||||||| ||| || | |||||||||||||| ||| |||
Sbjct 853 TGAGAGGATTAATACTGATTTGAATCATGGTC-GTTACGATGGTTATGCTGGAGATGTTT 911
Query 950 GGAGCTTAGGTGTTAGCATTTTGGAGTTTTACTTGGGGAGGTTTCCTTTCCCTGTGAGTA 1009
|||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 912 GGAGTTTAGGTGTTAGTATCTTGGAGTTTTACTTGGGGAGGTTTCCTTTTGCTGTGAGTA 971
Query 1010 GACAAGGTGATTGGGCAAGTCTTATGTGTGCCATCTGTATGTCTCAGCCTCCGGAAGCTC 1069
|||||||||||||||| |||||||||||||| || |||||||||||||| || |||||||
Sbjct 972 GACAAGGTGATTGGGCTAGTCTTATGTGTGCTATTTGTATGTCTCAGCCACCTGAAGCTC 1031
Query 1070 CACCTACCGCGTCGCCGGAGTTCCGGCATTTTATCTCGTGTTGCTTGCAGAG 1121
| |||| ||||| | |||||| || || ||| | || ||||| || |||||
Sbjct 1032 CGGCTACGGCGTCTCAGGAGTTTCGTCACTTTGTTTCTTGTTGTTTACAGAG 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75351018045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5