BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474285
Length=3341
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51690.3 | Symbols: B ALPHA | protein phosphatase 2A 55 kDa ... 3114 0.0
AT1G17720.1 | Symbols: ATB BETA | Protein phosphatase 2A, regul... 392 1e-107
> AT1G51690.3 | Symbols: B ALPHA | protein phosphatase 2A 55 kDa
regulatory subunit B alpha isoform | chr1:19164075-19170449
FORWARD LENGTH=2336
Length=2336
Score = 3114 bits (1686), Expect = 0.0
Identities = 1954/2073 (94%), Gaps = 60/2073 (3%)
Strand=Plus/Plus
Query 1314 GAGTGTGTGTGAATC-G-gagagcgagcg--agagagagaaagagGG-AATGAACGGTGG 1368
||||||||||||||| | ||||||||| | ||||||||| |||||| ||||||||||||
Sbjct 274 GAGTGTGTGTGAATCGGAGAGAGCGAGAGACAGAGAGAGAGAGAGGGAAATGAACGGTGG 333
Query 1369 TGATGAGGTCGTCGCAGCTTCGGCAGACCCATCTCTGCCTTTGGAATGGAGATTCTCTCA 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 TGATGAGGTCGTCGCAGCTTCGGCAGACCCATCTCTGCCTTTGGAATGGAGATTCTCTCA 393
Query 1429 GGTCTTCGGTGAACGAAGCGCTGGTGAAGAAGTTCAAGAAGTTGATATAATTTCAGCGAT 1488
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 394 GGTCTTCGGTGAACGAAGCGCTGGTGAAGAAGTTCAAGAAGTTGATATAATCTCAGCGAT 453
Query 1489 CGAATTTGATAATTCTGGAAACCATCTTGCTACTGGGGACCGTGGAGGACGTGTTGTTCT 1548
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TGAATTTGATAATTCTGGAAACCATCTTGCTACTGGGGACCGTGGAGGACGTGTTGTTCT 513
Query 1549 TTTCGAGAGGACCAATACCAATAATAGCAGTGGAACCAGGAGAGAGCTTGAAGAAGCTGA 1608
||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 514 TTTCGAGAGAACCGATACCAATAATAGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGA 573
Query 1609 TTATCCACTGAGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGA 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TTATCCACTGAGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGA 633
Query 1669 GTTTGATTACCTCAAGAGTTTGGAGATAGAGGAGAAAATTAACAAAATTAGATGGTGTCA 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GTTTGATTACCTCAAGAGTTTGGAGATAGAGGAGAAAATTAACAAAATTAGATGGTGTCA 693
Query 1729 AACAGCAAATGGTGCTCTTTTTCTCCTATCGACGAATGATAAAACCATCAAGTTTTGGAA 1788
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 694 AACAGCAAATGGAGCTCTTTTTCTCCTCTCGACCAATGATAAAACCATCAAGTTTTGGAA 753
Query 1789 GGTTCAAGACAAGAAGATCAAGAAAATTTGTGATATGAATTCAGATCCTTCAAGAACTAT 1848
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 754 GGTTCAAGACAAGAAGATCAAGAAAATCTGTGATATGAATTCAGATCCTTCAAGAACTGT 813
Query 1849 AGGAAATGGAACCGTTGCAAGCTCGAGCAATTCAAACATTACAAGCTCATGCCTTGTGAA 1908
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 814 AGGAAACGGAACCGTTGCAAGCTCGAGCAATTCAAACATTACAAACTCATGCCTTGTGAA 873
Query 1909 TGGAGGAGTATCTGAAGCGAACAACTCCTTATGTACTGACTTCTCTTTGCCACCAGGAGG 1968
||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 874 TGGAGGAGTATCTGAAGTGAACAACTCCTTATGTAATGACTTCTCATTGCCAGCAGGAGG 933
Query 1969 CATCTCTTCGCTGCGATTACCAGTGGTAGTAACTAGCCATGAGTCGAGCCCTATGGCTAG 2028
|||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 934 CATCTCTTCGCTGCGATTACCAGTGGTA--A-CTAGCCATGAGTCGAGCCCTGTGGCTAG 990
Query 2029 ATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAG 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 ATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAG 1050
Query 2089 TGACGGCGAAACATTTATTTCTGCTGATGATTTGCGAATAAATCTTTGGAATCTGGAAAT 2148
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1051 CGACGGCGAAACATTTATTTCTGCTGATGATTTGCGAATTAATCTTTGGAATCTGGAAAT 1110
Query 2149 TAGCAATCAAAGTTTCAATATTGTTGATGTCAAGCCTGCGAAAATGGAAGATCTATCTGA 2208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TAGCAATCAAAGTTTCAATATTGTTGATGTCAAGCCTGCGAAAATGGAAGATCTATCTGA 1170
Query 2209 GGTTATCACATCAGCAGAATTTCATCCTACCCATTGCAATATGTTAGCCTATAGCAGTTC 2268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 GGTTATCACATCAGCAGAATTTCATCCTACCCATTGCAATATGTTAGCCTATAGCAGTTC 1230
Query 2269 AAAAGGTTCAATTCGCCTGATTGATCTGCGGCAATCAGCTTTATGTGATTCACATTCAAA 2328
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1231 GAAAGGTTCAATTCGCCTGATTGATCTGCGCCAGTCAGCTTTATGTGATTCACATTCAAA 1290
Query 2329 ATTGTTTGAGGAACCAGAGCAAGCAAGTCCTAAATCGTTCTTCACTGAGATAATTGCTTC 2388
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1291 ATTGTTTGAGGAACCAGAGCAAGCAGGTCCTAAATCGTTCTTTACTGAGATAATTGCTTC 1350
Query 2389 AGTCTCAGACATCAAATTTGCAAAAGAAGGAAGATATCTACTCAGCCGTGACTACATGAC 2448
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1351 AGTCTCAGACATCAAATTTGCAAAAGAAGGAAGATATCTACTTAGCCGTGACTATATGAC 1410
Query 2449 ACTTAAGTTATGGGACATCAACATGGACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGA 2508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 ACTTAAGTTATGGGACATCAACATGGACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGA 1470
Query 2509 ATATTTGAAACCAAAGCTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGA 2568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 ATATTTGAAACCAAAGCTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGA 1530
Query 2569 GTGTTGTATAAGTGGCAATGGTTTGCGAGCAGCTACGGGTTCTTACAGCAATCTGTTCCG 2628
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1531 GTGTTGTATAAGTGGCAATGGCTTGCGAGCAGCTACAGGTTCTTACAGCAATCTGTTCCG 1590
Query 2629 TGTGTTTGGTGTTGCCCCGGGAGGTACTGAGACTGCAACCTTAGAAGCAAGCAGAAACCC 2688
|||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1591 TGTGTTTGGTGTTGCCCCCGGAAGTACTGAGACGGCAACCTTAGAAGCAAGCAGAAACCC 1650
Query 2689 AATGAGGAGACATGTCCCAATTCCGTCGAGGCCATCCAGAACACTAAGCAGCATAACGCG 2748
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1651 AATGAGGAGACATGTCCCAATTCCGTCGAGGCCATCCAGAGCACTAAGCAGTATAACGCG 1710
Query 2749 TGTTGTAAGTAGAGGATCAGAGAGTCCTGGAGTCGATGGAAATACTAATGCTCTTGATTA 2808
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1711 TGTCGTAAGTAGAGGATCAGAGAGTCCGGGAGTCGATGGGAATACTAATGCTCTTGATTA 1770
Query 2809 CACAACAAAGCTGCTGCATCTTGCTTGGCATCCAAACGAGAACTCAATTGCTTGCGCCGC 2868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 CACAACAAAGCTGCTGCATCTTGCTTGGCATCCAAACGAGAACTCAATTGCTTGCGCCGC 1830
Query 2869 TGCAAATAGCTTGTACATGTACTATGCTTAACTCAATACTCAGCCaaaaa-aa-a-GAAG 2925
|||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||
Sbjct 1831 TGCAAATAGCTTGTACATGTACTATGCTTAACTCAATACTCAGCAAAAAAGAAGAAGAAG 1890
Query 2926 CAGAAAAGGCGCATCTCCTTGCTCTAGACTCTGTTTTTCTTTGGTTCCCTATGGGTTGAT 2985
|||||||||||||| |||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 1891 CAGAAAAGGCGCATTTCCTTGCTCTAGACTCTGTTTTTCTT-GGTTCCGTATGGTTTGAT 1949
Query 2986 TGATGGGGATTGCTATATACACCATTACCATCATCATTGTCACTCACACATGATCTTTAA 3045
||||||||||||||||||||| | | ||||| ||||||||||||||||||||| |||
Sbjct 1950 TGATGGGGATTGCTATATACA---T--C-ATCATGATTGTCACTCACACATGATCTGTAA 2003
Query 3046 TCATCA------A---A-GGC--AA-G-CA-GTGAAGAAC-CAA--A-TCAttttc---t 3083
|||||| | | || || | || | | |||| ||| | | | | |
Sbjct 2004 TCATCATCGTGGACTTATGGGGGAATGGCATGGGGAGAAGGCAAGCAGTGAAAAACCAAT 2063
Query 3084 c-ttttct-t-tt-cttttttttCGT---AAGTGTAGAATTTTTCA-TT-TG-----G-A 3128
| |||||| | || |||||||| ||| ||||||||||||||||| || || | |
Sbjct 2064 CATTTTCTCTCTTTCTTTTTTT-CGTTTTAAGTGTAGAATTTTTCACTTGTGCACTTGGA 2122
Query 3129 AACTACTTCACAGGCCAAGCaaaaaaaGAACAAAGAAAATCCGATTGGAAGAAATCGTGA 3188
|||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 2123 AACTACTTTACAGGCCAAG-AAAAAA-GAACAAAGAAAATCCGATTGGAAGAAATCGTGA 2180
Query 3189 TTTTAGTAAACTAATCATCTCATATGACTTATGGATGGATATAGATTAGATATTTTATAA 3248
||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 2181 TTTTAGTAAGCTAATCATCTCGTATGACTTTTGGATGGATATAGATTAGAT-TTTTATAA 2239
Query 3249 TCTTTCCTGGTCTTTTGTGTAATCATTGTTTTATTGATTCTTTTGTTAAACTTGTTTCTT 3308
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2240 TCTTTCCTGGTCTGTTGTGTAATCATTGTTTTATTGATTCTTTTGTTAAACTTGTTTCT- 2298
Query 3309 ACTTTCTTTACTTCTTAAAATAATACATTTCAT 3341
|||||||| ||||||||||||||||||||||||
Sbjct 2299 ACTTTCTTGACTTCTTAAAATAATACATTTCAT 2331
> AT1G17720.1 | Symbols: ATB BETA | Protein phosphatase 2A, regulatory
subunit PR55 | chr1:6093208-6098383 REVERSE LENGTH=2565
Length=2565
Score = 392 bits (212), Expect = 1e-107
Identities = 371/446 (83%), Gaps = 17/446 (4%)
Strand=Plus/Plus
Query 1407 CTTTGGAATGGAGATTCTCTCAGGTCTTCGGTGAACGAAGCGCTGGTGAAGAAGTTCAAG 1466
|||| || |||||||||||||||||||||||||| |||| ||| || ||||||||||| |
Sbjct 362 CTTTAGAGTGGAGATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGG 421
Query 1467 AAGTTGATATAATTTCAGCGATCGAATTTGATAATTCTGGAAACCATCTTGCTACTGGGG 1526
||||||| || |||||||| |||||||||||||| |||| ||||||| || ||||| |
Sbjct 422 AAGTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAACTGGTG 481
Query 1527 ACCGTGGAGGACGTGTTGTTCTTTTCGAGAGGACCA-ATACCAATA-AT-A-GCAGTGGA 1582
||||||| || || || |||||||| || |||| || |||| || | || | | || ||
Sbjct 482 ACCGTGGGGGCCGAGTAGTTCTTTTTGAAAGGA-CAGATACTAA-AGATCATGGAG-GG- 537
Query 1583 ACCAGG-AGAGAGCTTGAAGAAG-CTGATTATCCACTGAGGCATCCAGAGTTTCGTTATA 1640
||||| || || |||| || || | ||||| ||| | |||||||| |||||||| ||||
Sbjct 538 TCCAGGAAG-GATCTTG-AGCAGACGGATTACCCAGTTAGGCATCCTGAGTTTCGATATA 595
Query 1641 AAACAGAGTTTCAGAGTCATGACCCTGAGTTTGATTACCTCAAGAGTTTGGAGATAGAGG 1700
||||||| |||||||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct 596 AAACAGAATTTCAGAGTCATGAACCAGAGTTTGACTATCTCAAGAGTTTGGAGATAGAGG 655
Query 1701 AGAAAATTAACAAAATTAGATGGTGTCAAACAGCAAATGGTGCTCTT-TTTCTCCTATCG 1759
||||||| |||||||| ||||||||||| |||| |||||||| || ||||| || ||
Sbjct 656 AGAAAATCAACAAAATCAGATGGTGTCAGCCAGCTAATGGTGCA-TTGTTTCTGCTTTCT 714
Query 1760 ACGAATGATAAAACCATCAAGTTTTGGAAGGTTCAAGACAAGAAGATCAAGAAAATTTGT 1819
|| || |||||||||||||| | ||||||||| ||||| |||||||||||||||||| ||
Sbjct 715 ACAAACGATAAAACCATCAAATATTGGAAGGTACAAGAGAAGAAGATCAAGAAAATTAGT 774
Query 1820 GATATGAAT-TCAGATCCTTCAAGAA 1844
|| |||||| | ||||| ||| |||
Sbjct 775 GAAATGAATATT-GATCCGTCA-GAA 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166253249102
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5