BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474287
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51700.1 | Symbols: ADOF1, DOF1 | DOF zinc finger protein 1 ... 767 0.0
AT3G21270.1 | Symbols: ADOF2, DOF2 | DOF zinc finger protein 2 ... 244 7e-64
> AT1G51700.1 | Symbols: ADOF1, DOF1 | DOF zinc finger protein
1 | chr1:19174070-19175189 FORWARD LENGTH=1120
Length=1120
Score = 767 bits (415), Expect = 0.0
Identities = 557/619 (90%), Gaps = 36/619 (6%)
Strand=Plus/Plus
Query 145 AAAAATGCAGGATCTGACGTCAGCAGCGGCGTATTACCATCAATCGATGATGATGACGAC 204
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 193 AAAAATGCAGGATCTGACGTCAGCAGCAGCGTATTATCATCAGTCGATGATGATGACGAC 252
Query 205 GGCGAAACAGAACCAACCAGAGTTACCAGAACAAGAACAGCTAAAGTGTCCTCGCTGTGA 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GGCGAAACAGAACCAACCAGAGTTACCAGAACAAGAACAGCTAAAGTGTCCTCGCTGTGA 312
Query 265 CTCACCCAACACTAAATTCTGTTACTACAACAATTATAATCTGTCACAGCCCCGTCACTT 324
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 313 CTCACCTAACACTAAATTCTGTTACTACAACAATTACAATCTGTCACAGCCCCGTCACTT 372
Query 325 TTGCAAAAGCTGTCGTCGTTACTGGACTAAAGGCGGTGCTCTTCGTAACATCCCCGTCGG 384
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 TTGCAAAAACTGTCGTCGTTACTGGACTAAAGGCGGTGCTCTTCGTAACATCCCCGTCGG 432
Query 385 TGGTGGAATTCGAAAAAACAACAAACGATCTGGTTCGTCATCGTCTTCTTCTTCTCCGTC 444
|||||||| ||| |||| |||||||||||| || || | ||||| | | |||
Sbjct 433 TGGTGGAACTCGGAAAAGCAACAAACGATC-----CG-----GT-T-CTTCT-C-C-GTC 477
Query 445 GAGTAATCTCAAGAATCAAACCGTCGCTGATCATC---ATCAGTC-TGGGTCCGGGTCAA 500
|||||||||||||| |||||||||||||| | | |||| || |||||||||||||
Sbjct 478 TAGTAATCTCAAGAACCAAACCGTCGCTGAGAAACCTGATCA-TCATGGGTCCGGGTCAG 536
Query 501 AATTAGAGGAAAAAGAAGAGAGGGTTTCGGGTCAAGAAATGGATCCGGCCCGGATGTTAT 560
|| || |||| |||||||| |||||||||||||||||| ||||| ||||||||||||
Sbjct 537 AA---GA--AAAA-GAAGAGAGAGTTTCGGGTCAAGAAATGAATCCGACCCGGATGTTAT 590
Query 561 ACGGGTTACCGGTTGGAGATCCGATTAGTGGTGGGAGTTTTAGTTCGCTT-TTGGCGTCG 619
|||||||||| ||||||||||||| | ||||| ||||||||||||| || |||||||||
Sbjct 591 ACGGGTTACCAGTTGGAGATCCGA--A-TGGTGCGAGTTTTAGTTCG-TTGTTGGCGTCG 646
Query 620 AATATGCAGATGGGTGGGCTTGTTTACGAATCCGGGTCGCGTTGGTTACCGAG-TATGGA 678
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 647 AATATGCAGATGGGTGGGCTTGTTTACGAGTCCGGGTCGCGTTGGTTACC-AGGTATGGA 705
Query 679 TTTGGGTTTGGGTTCGGGTCTACGGAGGAACGATGACACGTGGACTGATTTAGCCATGAA 738
||||||||||||||||| | |||||||| ||||||||||||||||| ||||| |||||
Sbjct 706 TTTGGGTTTGGGTTCGG-T--ACGGAGGAGTGATGACACGTGGACTGACTTAGCTATGAA 762
Query 739 CAGAGTGGAGAAGAATTGA 757
|||| ||||||||||||||
Sbjct 763 CAGAATGGAGAAGAATTGA 781
Score = 89.8 bits (48), Expect = 4e-17
Identities = 75/86 (87%), Gaps = 9/86 (10%)
Strand=Plus/Plus
Query 1 AACCCACCACCAAATATCTCCACTC--T-TCT-TC-T-CT-C--CTCCTGTAACTTGCAA 51
|||||||||||||||| |||||||| | ||| || | || | ||||| ||||||||||
Sbjct 7 AACCCACCACCAAATAACTCCACTCTTTATCTCTCTTCCTCCTTCTCCTATAACTTGCAA 66
Query 52 CTTCCCACACCAAAAAAGATTCCATC 77
||||||||||||||||||||||||||
Sbjct 67 CTTCCCACACCAAAAAAGATTCCATC 92
> AT3G21270.1 | Symbols: ADOF2, DOF2 | DOF zinc finger protein
2 | chr3:7474679-7475757 FORWARD LENGTH=1079
Length=1079
Score = 244 bits (132), Expect = 7e-64
Identities = 195/225 (87%), Gaps = 5/225 (2%)
Strand=Plus/Plus
Query 218 CAACCAGAGTTACCAGAACAAGAACAGCTAAAGTGTCCTCGCTGTGACTCACCCAACACT 277
|||||| |||| |||| ||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 313 CAACCACAGTTTGCAGAGCAAGAACAGTTAAAGTGTCCTCGTTGTGACTCACCAAACACT 372
Query 278 AAATTCTGTTACTACAACAATTATAATCTGTCACAGCCCCGTCACTTTTGCAAAAGCTGT 337
|||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||
Sbjct 373 AAATTCTGTTACTACAACAACTACAATCTCTCACAGCCTCGTCACTTTTGCAAAAGCTGT 432
Query 338 CGTCGTTACTGGACTAAAGGCGGTGCTCTTCGTAACATCCCCGTCGGTGGTGGAAT-TCG 396
||||||||||||||||||||||| ||||| |||||| | |||||||||||||| | |||
Sbjct 433 CGTCGTTACTGGACTAAAGGCGGCGCTCTCCGTAACGTTCCCGTCGGTGGTGGT-TCTCG 491
Query 397 AAAAAAC--AAC-AAACGATCTGGTTCGTCATCGTCTTCTTCTTC 438
|| ||| ||| |||||||| ||| || || |||||| ||||
Sbjct 492 TAAGAACGCAACCAAACGATCCACTTCTTCTTCTTCTTCTGCTTC 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36771395604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5