BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474292
Length=2496
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51745.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | ... 2447 0.0
AT3G21295.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | ... 111 3e-23
> AT1G51745.1 | Symbols: | Tudor/PWWP/MBT superfamily protein
| chr1:19191523-19194787 FORWARD LENGTH=2493
Length=2493
Score = 2447 bits (1325), Expect = 0.0
Identities = 1570/1684 (93%), Gaps = 33/1684 (2%)
Strand=Plus/Plus
Query 328 TTTG-TGTAATGGAGAGTAATGATGACCAAAACTTGGAGGCTATTAATGCGTCAGTAGGA 386
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 381 TTTGTTGTAATGGAGAGTAATGATGACCGAAACTTGGAGGCTATTAATGCGTCAGTAGGA 440
Query 387 AGATTGGTATGGGTTCGTCGCCGCAACGGGTCTTGGTGGCCTGGACAGACTCTGGTTCAT 446
||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 441 AGATTGGTATGGGTTCGCCGCCGTAACGGGTCTTGGTGGCCTGGACAGACTTTGGTTCAT 500
Query 447 GACCAAGTTCCTGATAACTCTTTGGTTTCTCCAAAAGTCGGTACTCCAATAAAGCTTCTA 506
|||||||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 501 GACCAAGTTCCTGACAACTCTTTGGTTGGTCCCAAAGTCGGCACTCCAATAAAGCTTCTA 560
Query 507 GGTCGTGACGATGTTAGCGTGTGAGGATTGGTATACTCTTGAAAATTCCAAGACGGTGAA 566
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 561 GGTCGTGACGATGTTAGC--GT--GGATTGGTATATTCTTGAAAATTCCAAGACGGTGAA 616
Query 567 GGCGTTTCGTTGTGGAGACTATGATACTTGCATTGAGAAGGCAAAGGCGAGCTCTAGTAA 626
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GGCGTTTCGTTGTGGAGAGTATGATACTTGCATTGAGAAGGCAAAGGCGAGCTCTAGTAA 676
Query 627 GAAGAAGACTGGCAAGTGTACTCGCCGAGAAGATGCCATTAACAATGCTCTCGAGATTGA 686
||||| | ||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 677 GAAGAGGTCTGGCAAGTGTACTCTCCGAGAAGATGCCATTAACAATGCTCTCAAGATTGA 736
Query 687 GAATGAACATCTTGCAAAAGAAGAAGATAATTTGTGTACTTTATCTGGTGAGGAAGATTC 746
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 737 GAATGAACATCTTGCAAAAGAAGATGATAATTTGTGTAATTTATCTGGTGAGGAAGATTC 796
Query 747 TAAAAGGTGTCTTTCTGGCAATGAGGATGAGGATTTGGGATCCTCTGATGCAGGAGAGAC 806
||| |||||||| |||||||| |||||||| |||| ||| ||||||||||||| ||||||
Sbjct 797 TAAGAGGTGTCTCTCTGGCAAAGAGGATGAAGATTCGGGCTCCTCTGATGCAGAAGAGAC 856
Query 807 TGAAGATGA--A-TTGGAC-TCAGCGCCAGAGCAATTGCAATCCAGTATGTCTTCCCAAG 862
||||||||| | |||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 857 TGAAGATGATGAGTTGG-CTTCAGCGCCAGAGCAATTGCAATCCAGTATATCTTCCCAAG 915
Query 863 AAATGAATAACGTTGGAGCTTCTAAGGTGCAGCCAAAGAGAAGAAGAACACCAAATGACT 922
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 916 AAATGAATAACGTTGGAGCTTCTAAAGTGCAGTCAAAGAGAAGAAGAACACCAAATGACT 975
Query 923 CGGAAGATGATGGGACTGAAGGAGTCAAGCGAATGAGAGGGCTTGAGGATATTGGGAAAG 982
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 976 CGGAAGATGATGGGACTGAAGGGGTCAAGCGAATGAGAGGGCTTGAGGATATTGGGAAAG 1035
Query 983 AACAGGCTGGTGCTATAGTCGAGCATAAGCAAGAATTGGGTTTGATCTGTGCTGTAAGTC 1042
|||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| | |
Sbjct 1036 AACAGGCTGGTGGTATAGTCGAGCATAAGCAAGATTTGGATTTGATCTGTGCTGTAGGCC 1095
Query 1043 TCAGTGATTCAGTGTCGAATGGAAATATTATTGCCAATGGGAACAAGGTGTGCTCCCCGT 1102
||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct 1096 TCAGTGATTCAGTGTCGAATGGAAATACTATTGCCAATGGGAACAAGGTATGCT-CCC-- 1152
Query 1103 CGTCATCACTAAAAAGAAAAAGGGCACAAGTCTTAAGTGCTCATGAGTGCTCTAAAAGGA 1162
||||||| | ||||| | | || | || | | |||||||||||||||||
Sbjct 1153 CGTCATC-GT-----TAAAAA--G-A-AA-TGTT-A--G----TGAGTGCTCTAAAAGGA 1194
Query 1163 AAAACCGACGCCGGCAATTGACAAAGGTGTTAGAGAGTACAGCTATGGTCTCTGTCCCTG 1222
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1195 AAAACCGACGCCGCCAATTGACAAAGGTTTTAGAGAGTACAGCTATGGTCTCTGTCCCTG 1254
Query 1223 TTACCTGTGACC-AGCTTGTCAGTTTGGATTGTGAAGGGATTTATGACAGCAAAGTACCA 1281
|||||||||||| || |||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1255 TTACCTGTGACCAAG-GTGTCAGTTTGGATTGTCAAGGGATTTATGACAGCAAAGTATCA 1313
Query 1282 GGAATGGAATCTGTTGAATCCATGAAAAGCGTATCTGTTGTAATCAACAATAACTCGGAC 1341
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1314 GGAATGGAGTCTGTTGAATCCATGAAAAGCGTTTCTGTTGTAATCAACAATAACTCGGAC 1373
Query 1342 AGCACCGGGATTTCGTGTGAGGATGCTTATGAAAATGTTGTCGGAGCCTCCCATAACAAC 1401
|| |||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AGTACCGGGGTGTCATGTGAGGATGCTTATGAAAATGTTGTCGGAGCCTCCCATAACAAC 1433
Query 1402 AAGGCAAGAGACAGTGAGATTTCCAGCATATCAGTTTCGGCAGAGGATGATTCTTCTGAC 1461
||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1434 AAGGCAAAAGACAGTGAGATTTCCAGCATATCTGTTTCCGCAGAGGATGATTCTTCTGAC 1493
Query 1462 AGATTATTTGATGTTCCACTAACTGGAGAAGAAAACCACTCAGAAGGCTTTCCGGCAACT 1521
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1494 AGATTATTTGATGTTCCACTAACCGGAGAAGAAAACCACTCAGAAGGCTTTCCGGCAGCT 1553
Query 1522 TGTAGAATCTCCTCATCAAGGAAAGCTCTTGTTACTGATTTAACCAGGCGGCATGATCGG 1581
||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1554 TGTAGAATCTCCTCACCAAGGAAAGCTCTTGTTACTGATTTAACCAGGCGGTGTGGTCGG 1613
Query 1582 AGTAGTCACAATGTGTTTGTTAAGAATGAGGGAAGTAATGGATCAGCTTGTACAAGTCCA 1641
| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1614 AATAGTCACAATGTGTTTGTTAAGAATGAGGCAAGTAACGGATCAGCTTGTACAAGTCCA 1673
Query 1642 CCAGCTTCAGAACCTGTCAACTGTAATTTGAGCGGGATTGAGAAGAGCACTTCTAAGTGG 1701
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1674 CCAGCTTCAGAACCTGTCAACTGTATTTTGAGCGGGATTGAGAAGAACACTTCTAAGTGG 1733
Query 1702 AAGCTAAAAGGAAAGAGAAACTCGAGGCAGATGAGTAAGAAACAAGAAGAGAGAAGAAAT 1761
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 CAGCTGAAAGGAAAGAGGAACTCGAGGCAGATGAGTAAGAAACAAGAAGAGAGAAGAAAT 1793
Query 1762 GTGTACGGTGAAGAAGCTAATAACAACAGTTGTACGCCTCATTCTGCGCTGTACGAGGTG 1821
|||||||| |||||||||||||||||||||| ||||||||||||| ||||||| ||||||
Sbjct 1794 GTGTACGGCGAAGAAGCTAATAACAACAGTTCTACGCCTCATTCTACGCTGTATGAGGTG 1853
Query 1822 AAAATTGAGGTAAAAGCAAACTATAACAAACCCCGTGTTCCGCTGGTGTCTCGTATGAGT 1881
|| |||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||||||
Sbjct 1854 AAGATTGAGGTAAAAGCAAGCTATACCAAACCCCGAGTTCCACTGGTGTCTCGTATGAGT 1913
Query 1882 GAATTGAATGGCAAAGCTATTGTTGGGCATCCTTTAAGTGTTGAAATCTTGGAAGAAGAC 1941
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1914 GAATTGAGTGGCAAAGCTATTGTTGGACATCCTTTAAGTGTTGAAATCTTGGAAGAAGAC 1973
Query 1942 TACTCCAACGGTATGGTGATGCCTCAAGTTGTTGTGAAGGCGAAGTCATTGTCCAAAAAG 2001
|||||||| |||||||||||||||| |||||||| |||||||||||||||| ||||||||
Sbjct 1974 TACTCCAATGGTATGGTGATGCCTCCAGTTGTTGCGAAGGCGAAGTCATTGCCCAAAAAG 2033
Query 2002 AATG 2005
||||
Sbjct 2034 AATG 2037
Score = 479 bits (259), Expect = 6e-134
Identities = 392/451 (87%), Gaps = 30/451 (7%)
Strand=Plus/Plus
Query 2063 GAAAGAAGCAAGAAGCAGACAACAGAAAAGGCAAAGGAAACGGTTGTAGCTTGTATACCG 2122
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2033 GAATGAAGCAAGAAGCAGACAACAGAGAAGGCAAAGGAAACGGTTGTAGCTTGTATACCG 2092
Query 2123 TTGAAAGTAGTTTTCAGCCGGATAAACGAAGTGCTGAAAGGCTCAGCAAGACAAACACAG 2182
||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||
Sbjct 2093 TTGAAAGTAGTTTTCAGTAGGATAAATGAAGTGTTGAAAGGGTCAGCAAGACAAACACAG 2152
Query 2183 CACCGAGCATTGCCATCTGCAGCCAAAATATgagagagagagaAGATAAAtttttggctg 2242
|||||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||||
Sbjct 2153 CACCGAGCATTGCCTTCTGCAGCCAAAACATGAGAGACAGAGAAGATAGATTTTTGGCTG 2212
Query 2243 gctttacgttttttgtttttgttttCCCTTCATCCATCTGCCTTGGTTTTGAAGCATAAA 2302
|||||||||||||| | |||||| | ||||| ||||| || ||||| ||||| ||||
Sbjct 2213 GCTTTACGTTTTTT-T----GTTTTCTCGTCATCTATCTGTCTGGGTTTCGAAGCTTAAA 2267
Query 2303 CTGAGATGAAAATAGGCTGCTGCTTTGAAGAAGTTGGAAGTGAGTAAATGTATATATATC 2362
||||||||||||||| ||| | |||| |||||||||||||||| ||||||| |||||||
Sbjct 2268 CTGAGATGAAAATAGACTG-T--TTTGGAGAAGTTGGAAGTGAGCAAATGTAAATATATC 2324
Query 2363 AGTAGTTAGTGGTTGAG--GT------G-TAAAA---CT-GAGATTAGGTGGGAGGGAT- 2408
||||||||||||||||| || | ||||| || ||||||||||||||| |||
Sbjct 2325 AGTAGTTAGTGGTTGAGATGTAAAACTGATAAAAAAGCTTGAGATTAGGTGGGAGTGATA 2384
Query 2409 -GAGAA-GATTGA-TGCTTAGAAAGAATTTTGCTTGTTTCAGGTAACTCATTATTGTTTG 2465
|||| | ||| ||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 2385 TGAGATTG-TTGGCTGCTTAGAAAGAATTTTCCTTGTTTCAGGTAACTCAAAATTGTTTG 2443
Query 2466 TTTGtttttttGTACTCTCAAGTTCTCTTGT 2496
||| | || ||||||||||||||||||||
Sbjct 2444 TTT-TCTT---GTACTCTCAAGTTCTCTTGT 2470
Score = 307 bits (166), Expect = 3e-82
Identities = 267/311 (86%), Gaps = 26/311 (8%)
Strand=Plus/Plus
Query 1 GACctcctcttctctctc-g---gtctctctctctccatccaaaaccagccctttctctc 56
|||||||||||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct 1 GACCTCCTCTTCTCTCTCAGTCTCTCTCTCTCTCTCCATCCAAAACAAGCCCTTTCTCTC 60
Query 57 tcctctctcctctctgctgctgctctctgtctTCCATTCACTAAACCGCCGGAGCAAAAA 116
||||||| | ||| ||| || |||| |||||||||||| |||||||||||||||||||
Sbjct 61 TCCTCTC-C-TCT--GCT-CT-CTCT--GTCTTCCATTCATTAAACCGCCGGAGCAAAAA 112
Query 117 CCCTTTTCTCAGAACCAAAAGA-AGAATGCGGTCTTGTCTTAATGCTATTTGATTCATTG 175
||||||||||| |||| |||| | ||||||||| || |||||||| |||||||| |
Sbjct 113 CCCTTTTCTCACAACCCGAAGACA-AATGCGGTC----CT-AATGCTATCTGATTCATAG 166
Query 176 ACAGATAGAAACCTCCTAACAGT-G-ATTTTTGTTGGTT-GCAGGATTCAAGAAGGGG-C 231
|||||||||||||||||||| | | | | || | | |||||||||||||||| |
Sbjct 167 ACAGATAGAAACCTCCTAAC-GCCGCAGAGTAGT-GAAAAG-AGGATTCAAGAAGGGGGC 223
Query 232 ATACTTTTGTTTAGTGAAAGAAAGTCACTTCATTGAGATTTCCAGATTATAAAGTTTTGA 291
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 224 ATACTTTTGTTTAGTGAAAGAAAGTCACTTCATTGAGATTTTCAAATTATAAAGTTTTGA 283
Query 292 TTTTTAGGTCA 302
|||||||||||
Sbjct 284 TTTTTAGGTCA 294
> AT3G21295.1 | Symbols: | Tudor/PWWP/MBT superfamily protein
| chr3:7489236-7492602 FORWARD LENGTH=2643
Length=2643
Score = 111 bits (60), Expect = 3e-23
Identities = 74/81 (91%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 897 AAAGAGAAGAAGAACACCAAATGACTCGGAAGATGATGGGACTGAAGGAGTCAAGCGAAT 956
||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||
Sbjct 936 AAAGAGAAGAAGAACACCAAATGACTCGGAAGATGATGGGACTCAAACAAACAAACGAAT 995
Query 957 GAGAGGGCTTGAGGATATTGG 977
|||||| ||||||||||||||
Sbjct 996 GAGAGGACTTGAGGATATTGG 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123862182267
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5