BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474312

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51913.1 | Symbols:  | LOCATED IN: endomembrane system; BEST...   483    5e-136


> AT1G51913.1 | Symbols:  | LOCATED IN: endomembrane system; BEST 
Arabidopsis thaliana protein match is: cryptdin protein-related 
(TAIR:AT1G51915.1); Has 22 Blast hits to 22 proteins 
in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 
0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:19292909-19293339 FORWARD LENGTH=345
Length=345

 Score =  483 bits (261),  Expect = 5e-136
 Identities = 299/317 (94%), Gaps = 3/317 (1%)
 Strand=Plus/Plus

Query  1    CAAAAAGTTGTTATGGCAAACGAGCGATCAAGCTCAACCCTCCTCCTTTGTGTTCTTGTA  60
            ||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct  10   CAAAAAGTTGTTATGGCAAACGAGCGATCAAGCTCAATCCTCTTCCTTTCTGTTCTTGTA  69

Query  61   CTT-TCTTTGGTCTTCTCTCCTACACTTCCATGTCAAGCAGCTCGAGTGCATCTCGATGT  119
            ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  70   CTTGT-TTTGGTCTTCTCTCCTACACTTCAATGTCAAGCAGCTCGAGTGCATCTCGATGT  128

Query  120  TGAAGGGCGTATGCTGCTAAGAGCACCAGTGCCAATTCGCTTTTGCCCGGCTTGTGTGTG  179
            |||||||| ||||||||| |||||||||||||||||||| |||||||| ||||||| |||
Sbjct  129  TGAAGGGCATATGCTGCTGAGAGCACCAGTGCCAATTCGGTTTTGCCCTGCTTGTGCGTG  188

Query  180  TTGTGCACCGGCTCCAAAAGGTTCTTGCTGCCCATGCCGATGCACCAACAATCCCTAAAA  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct  189  TTGTGCACCGGCTCCAAAAGGTTCTTGCTGCCCATGCCGATGCACCAACAATCCCCAAAG  248

Query  240  AGATGTGACTCTGCTTTCTGCTAGCATGTATGTGTTTGATATATGTATGTGTATGTGCAA  299
             ||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct  249  -GATGTGACTTTGCTTTCTGCTAGCATGTATGTGTTTGATATGTGAATGTGTATGTGCAA  307

Query  300  AATGGTCAAAATTGAAT  316
            ||||||||||||| |||
Sbjct  308  AATGGTCAAAATTTAAT  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14678182708


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5