BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474313

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51915.1 | Symbols:  | cryptdin protein-related | chr1:19293...   510    3e-144


> AT1G51915.1 | Symbols:  | cryptdin protein-related | chr1:19293478-19293969 
FORWARD LENGTH=417
Length=417

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 319/340 (94%), Gaps = 2/340 (1%)
 Strand=Plus/Plus

Query  1    ATCTGAACTCTTATTAAGTTTCTAAGCATTTTCATCACAAAGCTGCAATGGCCACCGACC  60
            ||||||| |||||||||||||||||||| ||| |||| |||||||||||||||||||| |
Sbjct  65   ATCTGAAATCTTATTAAGTTTCTAAGCA-TTT-ATCAGAAAGCTGCAATGGCCACCGAGC  122

Query  61   GATTCTCAATCATCCTCATATCCGTTCTTGTACTTGCTTTGGTCCTATTTCCACTCCTTC  120
            ||||||||| ||| ||||| |||||||| ||||||||||||||| ||| |||| ||||||
Sbjct  123  GATTCTCAACCATGCTCATTTCCGTTCTCGTACTTGCTTTGGTCTTATCTCCAATCCTTC  182

Query  121  CATGTCAAGCAACTCGTGCGCATCTAGATGCTGAAAAGCGTATGCTGAGGCGCgtgtgtc  180
            |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct  183  CATGTCAAGCAACTCGAGCGCATCTAGATGCTGAAACGCGTATGCTGAGGCGCGTGTGTC  242

Query  181  ctttgtgtgtgtgttgtgCACCGGCTCCACGAGGTGGTTGCTGCCCATGTCGCTGCCCCA  240
            ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct  243  CTTCGTGTGTGTGTTGTGCACCGGCTCCACGAGGTGCTTGCTGCCCATGTCGATGCCCCA  302

Query  241  AAAATCCCTAAACGCTTCGACTTTGCTTTCGTCTAACAGCTTGTCATGTGTTTAATATAA  300
            |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct  303  AAAATCCCTAAAAGCTTCGACTTTGATTTCGTCTAACACCTTGTCATGTGTTTAATATGA  362

Query  301  TCTTATTTACATGTGAATAAGCAATCAAAAGATTAGACTC  340
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  363  TCTTATTTACATGTGAATAAGCAATCAAAAGATTAGACTC  402



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15884608684


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5