BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474314
Length=2186
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51940.1 | Symbols: | protein kinase family protein / pepti... 3048 0.0
> AT1G51940.1 | Symbols: | protein kinase family protein / peptidoglycan-binding
LysM domain-containing protein | chr1:19295904-19299118
REVERSE LENGTH=2321
Length=2321
Score = 3048 bits (1650), Expect = 0.0
Identities = 1889/1999 (94%), Gaps = 37/1999 (2%)
Strand=Plus/Plus
Query 91 TTTCCCAATTTCTACTTCACACAATGAATCTCACCTTCTTCATCTTCTTCTT---TC--- 144
|||| |||||||||||||||||||||||||| ||||||| |||||||||||| ||
Sbjct 155 TTTCTCAATTTCTACTTCACACAATGAATCTTACCTTCTACATCTTCTTCTTAAGTCTTT 214
Query 145 T--C-A-----TC--C-TCAAAGCCAATGAATTGCTCTGACACTTCCCGTCTCTGTACTT 193
| | | || | ||||||||||||||||||||||||||| | |||||||| | ||
Sbjct 215 TACCAAGTTTCTCATCTTCAAAGCCAATGAATTGCTCTGACACTACTCGTCTCTGCAGTT 274
Query 194 CCTTCCTCGCTTTCAAACCAAACCAAAACCAATCTTTCTCCGTAATCCAAAGCATGTTCG 253
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 275 CCTTCCTTGCTTTCAAACCAAACCAAAACCAATCTTTCTCTGTAATCCAAAGCATGTTCG 334
Query 254 ATGTTTTACCAGC-AGACATAACCGCCGACATCTCCGGAGGTTACATCTACATTAAAAAG 312
|||| |||||| | ||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 335 ATGTATTACCA-CAAGACATAACCGCCGACATCTCCGGAGGTTACTTCTTTATTAAAAAG 393
Query 313 AACTGTTCTTGTCTTACCACAACTCATCAATACACAACAAACACAACATTCACAATCAGA 372
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 394 AACTGTTCTTGTCTTACTACGACTCATCAATACACAACAAACACAACATTCACAATCAGA 453
Query 373 CAAAACGTTGGATACGTTTACAATGTTGTCGTCTCTGCTTACTCTGGTCTCGCGTTTCCA 432
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 454 CAAAACGTTGGATACGTTTACAATGTTACCGTCTCTGCTTACTCTGGTCTCGCGTTTCCA 513
Query 433 CCGAATACGAGAAGAGCAGCTCGTGCTGGTTCGGTTGTTTCTGTTCAGCTTCTTTGTGGT 492
|||||||| | ||||||||||| |||||| | || ||||||||||||||||||||||||
Sbjct 514 CCGAATACAACTAGAGCAGCTCGCGCTGGTGCAGTGGTTTCTGTTCAGCTTCTTTGTGGT 573
Query 493 TGCTCTAGTGGTCTCTGGAACTATCTTATGAGCTACGTTGCCGTGGCTGGAGATAGTGTA 552
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 574 TGCTCTAGTGGTCTCTGGAACTATCTTATGAGCTACGTTGCTATGGCTGGAGATAGTGTA 633
Query 553 CAATCTCTCTCGAGTAGATTTGGTGTTAGTATGGATCGAATTGAAGAAGTTAATGGGATC 612
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 634 CAATCTCTCTCGAGCAGATTTGGTGTTAGTATGGATCGAATTGAGGATGTTAATGGGATC 693
Query 613 TTGAATCTTGATAATATCACAGCTGGTGATGT-CTTATACATTCCC-CTTGATTCCGTAC 670
|||||||||||||||||||||||||||||| | ||| || | |||| |||||||||||||
Sbjct 694 TTGAATCTTGATAATATCACAGCTGGTGATCTCCTT-TATA-TCCCACTTGATTCCGTAC 751
Query 671 CTGGAGAGGCTTACGAGACAAGGAAGATAAATCCACCAGCTCCTTCTCCTGCGCCTGCAT 730
|||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 752 CTGGAGAGCCTTATGAGACAAGTAAGATAAATCCACCAGCTCCTTCTCCTGCGCCTGCAT 811
Query 731 CATCATTAGCTAATGGCAATATCTCAGATGACCAGGTGAATCACACTGCAAAGAGTGGTA 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 CATCATTAGCTAATGGCAATATCTCAGATGACCAGGTGAATCACACTGCAAAGAGTGGTA 871
Query 791 GTCATGTGCCTTATATATGGATTGTTGGTGGTCTTGGAGTTGTGCTTGCGCTTCTTGTTT 850
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 872 GTCATGTGCCTTATATATGGATTGTTGGTGGTCTTGGAGTTGTGCTTGCACTTCTTGTTC 931
Query 851 TGTGTATACTTGTATGTATCTGTTTGAGATCATCTAGTTGCAGTTCCAGTGAGGAAGATG 910
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 TGTGCATACTTGTATGTATCTGTTTGAGATCATCTAGTTGCAGTTCCAGTGAGGAAGATG 991
Query 911 GTAATGGACACAACTTCCAAATCCTTAGAAAATCCGGTTTCTTTTGCGGTTCTGGTCGGT 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 GTAATGGACACAACTTCCAAATCCTTAGAAAATCCGGTTTCTTTTGCGGTTCTGGTCGGT 1051
Query 971 ATAACTGCTGCAGATCAGGGGATTTTAGACAAACCAATGGTGAAAATCAGAGTCATCATC 1030
|||||||||| ||||||||||||||||||||||||||||||| | | | | ||
Sbjct 1052 ATAACTGCTGTAGATCAGGGGATTTTAGACAAACCAATGGTG------A-A---A-C-TC 1099
Query 1031 AAGTTGCTGCTATTCCTAAAGCTCTTGGTGACGGAATGTTTGAGATAGAGAAGCCTATGG 1090
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1100 AAGTTGTTGCTATTCCTAAAGCTCTTGGTGATGGAATGTTTGAGATAGAGAAGCCTATGG 1159
Query 1091 TGTTTACTTATGAAGAAATTCGTGCGGCTACGGATGAGTTTTCGGATTCTAATCTTCTTG 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TGTTTACTTATGAAGAAATTCGTGCGGCTACGGATGAGTTTTCGGATTCTAATCTTCTTG 1219
Query 1151 GTCATGGAAATTATGGTTCTGTATACTTTGGTTTACTTAGAGAACAGGAAGTTGCTGTCA 1210
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1220 GTCATGGAAACTATGGTTCTGTATACTTTGGTCTACTTAGAGAACAGGAAGTTGCTGTCA 1279
Query 1211 AAAGAATGACTGCTACAAAAACTAAAGAGTTTGCAGCAGAGATGAAAGTGCTTTGCAAAG 1270
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 AAAGGATGACTGCTACAAAAACTAAAGAGTTTGCAGCAGAGATGAAAGTGCTTTGCAAAG 1339
Query 1271 TTCATCACTCCAATCTGGTAGAATTGATTGGTTACGCTGCAACCGTTGACGAGCTTTTCG 1330
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 TTCATCATTCCAATCTGGTAGAATTGATTGGTTACGCTGCAACCGTTGACGAGCTTTTCG 1399
Query 1331 TAGTGTATGAATATGTCCAAAAGGGAATGCTGAAAAGCCATTTGCATGATCCTCAGAGCA 1390
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 TAGTTTATGAATATGTCCGAAAGGGAATGCTGAAAAGCCATTTGCATGATCCTCAGAGCA 1459
Query 1391 AAGGCAATACCCCACTTTCTTGGATAATGAGGAATCAGATTGCACTTGATGCAGCAAGAG 1450
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1460 AAGGAAATACCCCACTTTCTTGGATAATGAGGAATCAGATTGCACTTGACGCAGCAAGAG 1519
Query 1451 GCTTGGAATATATTCATGAGCATACTAAAACTCATTATGTTCACCGAGATATCAAAACAA 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1520 GCTTGGAATATATTCATGAGCATACTAAAACTCATTATGTTCACCGAGATATCAAGACAA 1579
Query 1511 GCAACATTTTGCTTGACGAGGCATTTAGAGGA-AAGATATCCGATTTTGGACTTGCAAAA 1569
|||| |||||||| ||||||||||| || || |||||||| ||||||||||||||||||
Sbjct 1580 GCAATATTTTGCTCGACGAGGCATTCAG-GGCTAAGATATCGGATTTTGGACTTGCAAAA 1638
Query 1570 CTGGTTGAGAAAACTGGAGAGGGAGAAATTTCTGTTACTAAAGTTGTTGGTACATATGGT 1629
|| |||||||||||||||||||||||||| || || |||||||| |||||||||||||||
Sbjct 1639 CTCGTTGAGAAAACTGGAGAGGGAGAAATATCAGTAACTAAAGTAGTTGGTACATATGGT 1698
Query 1630 TATCTTGCACCAGAATATCTAAGCGACGGTCTTGCCACCTCGAAAAGTGATGTTTATGCC 1689
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1699 TATCTTGCACCAGAATATCTAAGCGACGGTCTTGCCACCTCGAAAAGTGATATTTACGCC 1758
Query 1690 TTTGGTGTTGTTCTTTTCGAAATTATATCCGGAAGAGAAGCTGTTATAAGAACTGAGGCG 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1759 TTTGGTGTTGTTCTTTTCGAAATTATATCCGGAAGAGAAGCTGTTATAAGAACGGAGGCG 1818
Query 1750 ATGGGAACCAAGAATCCAGAAAGACGTCCATTGGCATCTATTATGTTAGCAGCGCTAAAG 1809
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1819 ATTGGAACTAAGAATCCAGAAAGACGTCCATTGGCATCTATTATGTTAGCAGTGCTAAAG 1878
Query 1810 AACTCACCAGACTCTATGAACATGTCGAGTTTGAAGGAGTTTGTTGACCCCAACATGATG 1869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 AACTCACCAGACTCTATGAACATGTCGAGTTTGAAGGAGTTTGTTGACCCCAACATGATG 1938
Query 1870 GATTTATACCCGCACGACTGTTTGTTCAAGATTGCTATGTTGGCAAAGCAATGCGTTGAT 1929
|||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 1939 GATTTATACCCGCATGACTGTTTGTTCAAGATTGCTACGTTGGCAAAGCAATGTGTGGAT 1998
Query 1930 GATGATCCGATTCTAAGACCAAACATGAAGCAAGTGGTTATATCGCTCTCGCAGATACTC 1989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GATGATCCGATTCTAAGACCAAACATGAAGCAAGTGGTTATATCGCTCTCGCAGATACTC 2058
Query 1990 CTGTCTTCCATTGAATGGGAAGCAACACTTGCTGGAAACAGCCAAGTCTTTAGTGGACTT 2049
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 2059 CTGTCTTCCATTGAATGGGAAGCCACTCTTGCTGGAAACAGCCAAGTCTTTAGTGGTCTA 2118
Query 2050 GTCCAAGGAAGATAAAAAC 2068
|||||||||||||||||||
Sbjct 2119 GTCCAAGGAAGATAAAAAC 2137
Score = 152 bits (82), Expect = 1e-35
Identities = 108/120 (90%), Gaps = 4/120 (3%)
Strand=Plus/Plus
Query 2068 CCATTGCCTAGAAGAAGCTTAGTTTGTCTAGA-GATATGATCGATCGCAGTCTAACTAAG 2126
|||||||||||||||||||||||||||||| | | | ||||| ||||||||||||||||
Sbjct 2184 CCATTGCCTAGAAGAAGCTTAGTTTGTCTAAACCAAAAGATCGTTCGCAGTCTAACTAAG 2243
Query 2127 TAGTTAGTTACAGAGACTAATCTCTATATGATGATTATTCTTTTGGAGATTCAAATGAAG 2186
||| ||||||||||||| |||||||||||||| | ||||||||||||| ||||||||||
Sbjct 2244 TAGATAGTTACAGAGACAAATCTCTATATGAT--T-ATTCTTTTGGAGAATCAAATGAAG 2300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108433177200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5