BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474314 Length=2186 Score E Sequences producing significant alignments: (Bits) Value AT1G51940.1 | Symbols: | protein kinase family protein / pepti... 3048 0.0 > AT1G51940.1 | Symbols: | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein | chr1:19295904-19299118 REVERSE LENGTH=2321 Length=2321 Score = 3048 bits (1650), Expect = 0.0 Identities = 1889/1999 (94%), Gaps = 37/1999 (2%) Strand=Plus/Plus Query 91 TTTCCCAATTTCTACTTCACACAATGAATCTCACCTTCTTCATCTTCTTCTT---TC--- 144 |||| |||||||||||||||||||||||||| ||||||| |||||||||||| || Sbjct 155 TTTCTCAATTTCTACTTCACACAATGAATCTTACCTTCTACATCTTCTTCTTAAGTCTTT 214 Query 145 T--C-A-----TC--C-TCAAAGCCAATGAATTGCTCTGACACTTCCCGTCTCTGTACTT 193 | | | || | ||||||||||||||||||||||||||| | |||||||| | || Sbjct 215 TACCAAGTTTCTCATCTTCAAAGCCAATGAATTGCTCTGACACTACTCGTCTCTGCAGTT 274 Query 194 CCTTCCTCGCTTTCAAACCAAACCAAAACCAATCTTTCTCCGTAATCCAAAGCATGTTCG 253 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 275 CCTTCCTTGCTTTCAAACCAAACCAAAACCAATCTTTCTCTGTAATCCAAAGCATGTTCG 334 Query 254 ATGTTTTACCAGC-AGACATAACCGCCGACATCTCCGGAGGTTACATCTACATTAAAAAG 312 |||| |||||| | ||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 335 ATGTATTACCA-CAAGACATAACCGCCGACATCTCCGGAGGTTACTTCTTTATTAAAAAG 393 Query 313 AACTGTTCTTGTCTTACCACAACTCATCAATACACAACAAACACAACATTCACAATCAGA 372 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 394 AACTGTTCTTGTCTTACTACGACTCATCAATACACAACAAACACAACATTCACAATCAGA 453 Query 373 CAAAACGTTGGATACGTTTACAATGTTGTCGTCTCTGCTTACTCTGGTCTCGCGTTTCCA 432 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 454 CAAAACGTTGGATACGTTTACAATGTTACCGTCTCTGCTTACTCTGGTCTCGCGTTTCCA 513 Query 433 CCGAATACGAGAAGAGCAGCTCGTGCTGGTTCGGTTGTTTCTGTTCAGCTTCTTTGTGGT 492 |||||||| | ||||||||||| |||||| | || |||||||||||||||||||||||| Sbjct 514 CCGAATACAACTAGAGCAGCTCGCGCTGGTGCAGTGGTTTCTGTTCAGCTTCTTTGTGGT 573 Query 493 TGCTCTAGTGGTCTCTGGAACTATCTTATGAGCTACGTTGCCGTGGCTGGAGATAGTGTA 552 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 574 TGCTCTAGTGGTCTCTGGAACTATCTTATGAGCTACGTTGCTATGGCTGGAGATAGTGTA 633 Query 553 CAATCTCTCTCGAGTAGATTTGGTGTTAGTATGGATCGAATTGAAGAAGTTAATGGGATC 612 |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| Sbjct 634 CAATCTCTCTCGAGCAGATTTGGTGTTAGTATGGATCGAATTGAGGATGTTAATGGGATC 693 Query 613 TTGAATCTTGATAATATCACAGCTGGTGATGT-CTTATACATTCCC-CTTGATTCCGTAC 670 |||||||||||||||||||||||||||||| | ||| || | |||| ||||||||||||| Sbjct 694 TTGAATCTTGATAATATCACAGCTGGTGATCTCCTT-TATA-TCCCACTTGATTCCGTAC 751 Query 671 CTGGAGAGGCTTACGAGACAAGGAAGATAAATCCACCAGCTCCTTCTCCTGCGCCTGCAT 730 |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 752 CTGGAGAGCCTTATGAGACAAGTAAGATAAATCCACCAGCTCCTTCTCCTGCGCCTGCAT 811 Query 731 CATCATTAGCTAATGGCAATATCTCAGATGACCAGGTGAATCACACTGCAAAGAGTGGTA 790 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 812 CATCATTAGCTAATGGCAATATCTCAGATGACCAGGTGAATCACACTGCAAAGAGTGGTA 871 Query 791 GTCATGTGCCTTATATATGGATTGTTGGTGGTCTTGGAGTTGTGCTTGCGCTTCTTGTTT 850 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 872 GTCATGTGCCTTATATATGGATTGTTGGTGGTCTTGGAGTTGTGCTTGCACTTCTTGTTC 931 Query 851 TGTGTATACTTGTATGTATCTGTTTGAGATCATCTAGTTGCAGTTCCAGTGAGGAAGATG 910 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 932 TGTGCATACTTGTATGTATCTGTTTGAGATCATCTAGTTGCAGTTCCAGTGAGGAAGATG 991 Query 911 GTAATGGACACAACTTCCAAATCCTTAGAAAATCCGGTTTCTTTTGCGGTTCTGGTCGGT 970 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 992 GTAATGGACACAACTTCCAAATCCTTAGAAAATCCGGTTTCTTTTGCGGTTCTGGTCGGT 1051 Query 971 ATAACTGCTGCAGATCAGGGGATTTTAGACAAACCAATGGTGAAAATCAGAGTCATCATC 1030 |||||||||| ||||||||||||||||||||||||||||||| | | | | || Sbjct 1052 ATAACTGCTGTAGATCAGGGGATTTTAGACAAACCAATGGTG------A-A---A-C-TC 1099 Query 1031 AAGTTGCTGCTATTCCTAAAGCTCTTGGTGACGGAATGTTTGAGATAGAGAAGCCTATGG 1090 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1100 AAGTTGTTGCTATTCCTAAAGCTCTTGGTGATGGAATGTTTGAGATAGAGAAGCCTATGG 1159 Query 1091 TGTTTACTTATGAAGAAATTCGTGCGGCTACGGATGAGTTTTCGGATTCTAATCTTCTTG 1150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1160 TGTTTACTTATGAAGAAATTCGTGCGGCTACGGATGAGTTTTCGGATTCTAATCTTCTTG 1219 Query 1151 GTCATGGAAATTATGGTTCTGTATACTTTGGTTTACTTAGAGAACAGGAAGTTGCTGTCA 1210 |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1220 GTCATGGAAACTATGGTTCTGTATACTTTGGTCTACTTAGAGAACAGGAAGTTGCTGTCA 1279 Query 1211 AAAGAATGACTGCTACAAAAACTAAAGAGTTTGCAGCAGAGATGAAAGTGCTTTGCAAAG 1270 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1280 AAAGGATGACTGCTACAAAAACTAAAGAGTTTGCAGCAGAGATGAAAGTGCTTTGCAAAG 1339 Query 1271 TTCATCACTCCAATCTGGTAGAATTGATTGGTTACGCTGCAACCGTTGACGAGCTTTTCG 1330 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1340 TTCATCATTCCAATCTGGTAGAATTGATTGGTTACGCTGCAACCGTTGACGAGCTTTTCG 1399 Query 1331 TAGTGTATGAATATGTCCAAAAGGGAATGCTGAAAAGCCATTTGCATGATCCTCAGAGCA 1390 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1400 TAGTTTATGAATATGTCCGAAAGGGAATGCTGAAAAGCCATTTGCATGATCCTCAGAGCA 1459 Query 1391 AAGGCAATACCCCACTTTCTTGGATAATGAGGAATCAGATTGCACTTGATGCAGCAAGAG 1450 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1460 AAGGAAATACCCCACTTTCTTGGATAATGAGGAATCAGATTGCACTTGACGCAGCAAGAG 1519 Query 1451 GCTTGGAATATATTCATGAGCATACTAAAACTCATTATGTTCACCGAGATATCAAAACAA 1510 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1520 GCTTGGAATATATTCATGAGCATACTAAAACTCATTATGTTCACCGAGATATCAAGACAA 1579 Query 1511 GCAACATTTTGCTTGACGAGGCATTTAGAGGA-AAGATATCCGATTTTGGACTTGCAAAA 1569 |||| |||||||| ||||||||||| || || |||||||| |||||||||||||||||| Sbjct 1580 GCAATATTTTGCTCGACGAGGCATTCAG-GGCTAAGATATCGGATTTTGGACTTGCAAAA 1638 Query 1570 CTGGTTGAGAAAACTGGAGAGGGAGAAATTTCTGTTACTAAAGTTGTTGGTACATATGGT 1629 || |||||||||||||||||||||||||| || || |||||||| ||||||||||||||| Sbjct 1639 CTCGTTGAGAAAACTGGAGAGGGAGAAATATCAGTAACTAAAGTAGTTGGTACATATGGT 1698 Query 1630 TATCTTGCACCAGAATATCTAAGCGACGGTCTTGCCACCTCGAAAAGTGATGTTTATGCC 1689 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1699 TATCTTGCACCAGAATATCTAAGCGACGGTCTTGCCACCTCGAAAAGTGATATTTACGCC 1758 Query 1690 TTTGGTGTTGTTCTTTTCGAAATTATATCCGGAAGAGAAGCTGTTATAAGAACTGAGGCG 1749 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1759 TTTGGTGTTGTTCTTTTCGAAATTATATCCGGAAGAGAAGCTGTTATAAGAACGGAGGCG 1818 Query 1750 ATGGGAACCAAGAATCCAGAAAGACGTCCATTGGCATCTATTATGTTAGCAGCGCTAAAG 1809 || ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1819 ATTGGAACTAAGAATCCAGAAAGACGTCCATTGGCATCTATTATGTTAGCAGTGCTAAAG 1878 Query 1810 AACTCACCAGACTCTATGAACATGTCGAGTTTGAAGGAGTTTGTTGACCCCAACATGATG 1869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1879 AACTCACCAGACTCTATGAACATGTCGAGTTTGAAGGAGTTTGTTGACCCCAACATGATG 1938 Query 1870 GATTTATACCCGCACGACTGTTTGTTCAAGATTGCTATGTTGGCAAAGCAATGCGTTGAT 1929 |||||||||||||| |||||||||||||||||||||| ||||||||||||||| || ||| Sbjct 1939 GATTTATACCCGCATGACTGTTTGTTCAAGATTGCTACGTTGGCAAAGCAATGTGTGGAT 1998 Query 1930 GATGATCCGATTCTAAGACCAAACATGAAGCAAGTGGTTATATCGCTCTCGCAGATACTC 1989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1999 GATGATCCGATTCTAAGACCAAACATGAAGCAAGTGGTTATATCGCTCTCGCAGATACTC 2058 Query 1990 CTGTCTTCCATTGAATGGGAAGCAACACTTGCTGGAAACAGCCAAGTCTTTAGTGGACTT 2049 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || Sbjct 2059 CTGTCTTCCATTGAATGGGAAGCCACTCTTGCTGGAAACAGCCAAGTCTTTAGTGGTCTA 2118 Query 2050 GTCCAAGGAAGATAAAAAC 2068 ||||||||||||||||||| Sbjct 2119 GTCCAAGGAAGATAAAAAC 2137 Score = 152 bits (82), Expect = 1e-35 Identities = 108/120 (90%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 2068 CCATTGCCTAGAAGAAGCTTAGTTTGTCTAGA-GATATGATCGATCGCAGTCTAACTAAG 2126 |||||||||||||||||||||||||||||| | | | ||||| |||||||||||||||| Sbjct 2184 CCATTGCCTAGAAGAAGCTTAGTTTGTCTAAACCAAAAGATCGTTCGCAGTCTAACTAAG 2243 Query 2127 TAGTTAGTTACAGAGACTAATCTCTATATGATGATTATTCTTTTGGAGATTCAAATGAAG 2186 ||| ||||||||||||| |||||||||||||| | ||||||||||||| |||||||||| Sbjct 2244 TAGATAGTTACAGAGACAAATCTCTATATGAT--T-ATTCTTTTGGAGAATCAAATGAAG 2300 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 108433177200 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5