BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474323
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52050.1 | Symbols: | Mannose-binding lectin superfamily pr... 1531 0.0
AT1G52060.1 | Symbols: | Mannose-binding lectin superfamily pr... 562 2e-159
AT1G60110.1 | Symbols: | Mannose-binding lectin superfamily pr... 65.8 8e-10
AT1G60130.1 | Symbols: | Mannose-binding lectin superfamily pr... 65.8 8e-10
> AT1G52050.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:19354919-19356764 REVERSE LENGTH=1145
Length=1145
Score = 1531 bits (829), Expect = 0.0
Identities = 959/1021 (94%), Gaps = 12/1021 (1%)
Strand=Plus/Plus
Query 1 CATACTTATCGATCATGTTCATCATCTATCTTTTTCTCTTTCTCTCATCTGCCATTATAG 60
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3 CATAATTATCGATCATGTTCATCATCTATCTTTTTATCTTTCTCTCATCTGCCATTATAG 62
Query 61 ATTCAAATGGGTTTGCAATGGCCCAAAAGATAAAAGCAATTGGTGGCAAGGGAGGGAAAC 120
||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 63 ATTCAAATGGGGTTGCAATGGCCCAAAAGATCGAAGCAATTGGTGGGAAGGGAGGGAAAC 122
Query 121 TGTGGGATGATGGTGCCAACCATGATAATATAGCAAAGGTTTATATACGAGGTGATCATG 180
||||||||| |||| | | |||||||| ||||||||||||| ||||||||||||||||
Sbjct 123 GGTGGGATGACGGTG-CGA--ATGATAATGTAGCAAAGGTTTACATACGAGGTGATCATG 179
Query 181 AAGGCATTCAGTACATCAAATTCGACTATGTCAAGGATGGACAATCGCTTAATGGATCAG 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 AAGGCATTCAGTACATCAAATTCGACTATGTCAAGGATGGACAATCGTTTAATGGATCAG 239
Query 241 TCCATGGTGGTTCAGCCGATGGTTTCACACAAACGTTGGAGATTGACCATCTCCAGTATG 300
||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 240 TCCATGGTGTTTCAGCCGACGGTTTCACACAGACGTTTGAGATTGACCATCTCCAGTATG 299
Query 301 AACAAATTGTATCTGTTAAGGGTTACTACAACAGGATTACCGGTGTGATGCAAGCACTCC 360
||||||||||||||||| ||||||||||| || ||| ||||||||||||||||||||||
Sbjct 300 AACAAATTGTATCTGTTGAGGGTTACTACGACTGGAAGACCGGTGTGATGCAAGCACTCC 359
Query 361 AATTCAAAACCAACCTCAAGACTTCAGAATTTATTGGATATCAAAAGGGTATTAAGTTTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 AATTCAAAACCAACCTCAAGACTTCAGAATTTATTGGATATCAAAAGGGTACTAAGTTTT 419
Query 421 CACTTGGAGTCGATGGAAAAATCATCGTTGGCTTCCATGGATCTGCTCT-GCGTAACCTC 479
|||||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct 420 CACTTGGAGTCGATGGAAAAGTCATCGTTGGCTTCCATGGATCTGCT-TGGCGTAGCCTC 478
Query 480 CGCTCTCTTGGGGCATATTTAAAGACTCCTCCTACCAAATCGGAACTCCAAGGTGGCATA 539
|| |||||||| |||||| |||||||| ||||||||||||| |||||||| |||||||||
Sbjct 479 CGATCTCTTGGTGCATATGTAAAGACTGCTCCTACCAAATCAGAACTCCAGGGTGGCATA 538
Query 540 ACCGGAGGCGTATATTGGGATGATGGTCCTAATTTCGACGGTGTAAGAAAGGTGTATGTT 599
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ACCGGAGGCGAATATTGGGATGATGGTCCTAATTTCGACGGTGTAAGAAAGGTGTATGTT 598
Query 600 ACTTTTACTGAAACTCATATAAGGAGTATGAACATTGACTATGACCAAGATGGCCAAGTG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACTTTTACTGAAACTCATATAAGGAGTATGAACATTGACTATGACCAAGATGGCCAAGTG 658
Query 660 GTAACACGTTCTCACGGGATGAAGAATGGAGAAACACAGGAGTTTGCTGTGGACTTTCCG 719
|| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 659 GTGACACGTTATCACGGGATGAAGAATGGAGAAACGCAGGAGTTTGCTGTGGACTTTCCG 718
Query 720 AATGAATATATGACATCTGTGGAGGGTACATACGACCATATCAGTGAGGGTAACTATTTG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AATGAATATATGACATCTGTGGAGGGTACATACGACCATATCAGTGAGGGTAACTATTTG 778
Query 780 GTTCTTACGTCATTGACTTTCAAAACATCAAAAGGAAGAATCTCTCAGACATTTGGATTG 839
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 779 GTTCTTACGTCATTGACTTTCAAAACGTCAAAAGGGAGAATCTCTCAGACATTTGGATTG 838
Query 840 GTCATTGGAACCAAGTTTGTGTTGGAGAGTAAAGGTAATGTTATT-GTCGGGTTCCATGG 898
|||||||| ||||| ||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 839 GTCATTGGTACCAAATTTGTGTTGGAGACTAAAGGTAATGTTATCAGT-GGGTTCCATGG 897
Query 899 AAGGGATGGTGGATCTTTTGATGCTATCGGAGTTTATTTCTCTCCAATGATATCTTCATA 958
||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 898 AAGAGATGGTGGTTCTTTTGATGCTATTGGAGTATATTTCTCTCCAATGATATCTTCCTA 957
Query 959 GAGCTACACAAGTTTGTTCATGG-TCACT-C--GTATCTTTTACTACTTTAAAATAATTA 1014
||||||| ||||||||||||| | || | ||||||||||||||||||||||| |||
Sbjct 958 -AGCTACAGAAGTTTGTTCATGCATGGCTTCACGTATCTTTTACTACTTTAAAATACTTA 1016
Query 1015 T 1015
|
Sbjct 1017 T 1017
> AT1G52060.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:19359039-19360675 REVERSE LENGTH=969
Length=969
Score = 562 bits (304), Expect = 2e-159
Identities = 759/971 (78%), Gaps = 61/971 (6%)
Strand=Plus/Plus
Query 8 ATCGATCATG-TTCATCATCTATCTTTTTCTCTTTCTCTCATCTGCCATTATAGATTCAA 66
|||||||||| || |||||||| | |||||||||||||| || ||||||||||||||||
Sbjct 18 ATCGATCATGATT-TTCATCTATATATTTCTCTTTCTCTCCTCAGCCATTATAGATTCAA 76
Query 67 ATGGGTTTGCAATGGCCCAAAAGATAAAAGC-AATTGGTGGCAAGGGAGGGAAACTG--T 123
||||||||||||||||||||||| | | || || ||||| || || ||| || | |
Sbjct 77 ATGGGTTTGCAATGGCCCAAAAGTTGGAGGCTAAG-GGTGGGAAAGG-GGGCAAG-GAAT 133
Query 124 GGGATGATGGTGCCAACCATGATAATATAGCAAAGGTTTATATACGAGGTGATCATGAAG 183
|||||||||| ||| |||||||||| ||||||| |||||||||||||||| || |||||
Sbjct 134 GGGATGATGGAGCCGGCCATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAG 193
Query 184 GCATTCAGTACATCAAATTCGACTATGTCAAGGATGGACAATC-GCTTA-ATGGATCAGT 241
|||| || ||||||||||| || |||||||| |||||||| || | | | | |||||| |
Sbjct 194 GCATACAATACATCAAATTTGATTATGTCAAAGATGGACAGTCTG-T-AGAGGGATCAAT 251
Query 242 CCATGGTGGTTCAGCC-GATGGTTTCACACAAACGTTGGAGATTGACCATCTCCA-GTAT 299
|||||||| ||| | | |||||||||||||| ||| ||||||||| ||| | | |
Sbjct 252 CCATGGTGTTTCGGGTAG-TGGTTTCACACAAATGTTCGAGATTGACTATCAAAACGG-T 309
Query 300 GAACAAATTGTATCTGTTAAGGGTTACTACAACAGGATTACCGGTGTGATGCAAGCACTC 359
||||| |||||||||||| | ||||||| ||| || |||||||||||||||||||
Sbjct 310 GAACATATTGTATCTGTTGACGGTTACTTTGACAA-AT--CCGGTGTGATGCAAGCACTT 366
Query 360 CAATTCAAAACCAACCTCAAGACTTCAGAATTTATTGGATATCAAAAGGGTATTA-A--G 416
||||||||||||||| ||||| || ||| | |||||||| | |||| ||| || | |
Sbjct 367 GAATTCAAAACCAACCGGAAGACCTCTGAAGTGATTGGATACCCAAAGAGTAATACAAAG 426
Query 417 TTTTCACTTGGAGTCG-AT--GGAAAAATCATCGTTGGCTTCCATGGATCTGCTCTGCGT 473
||||||||||| | | | ||||| || ||| ||||||||||||||| || | |
Sbjct 427 TTTTCACTTGGTGGGGTAAACGGAAAGATGATCAATGGCTTCCATGGATCCGCGG-G-GA 484
Query 474 AA-CC-TCCGCTCTC-TTGGGGCATATTTAA-AGAC-T-CCTCCTACCAAATCGGAACTC 527
|| || | || | |||| || ||||||| | | | |||||||| || || ||||||
Sbjct 485 AAGCCCTAAATTC-CATTGGAGCGTATTTAACAAAAGTTCCTCCTACTAAGTCAGAACTC 543
Query 528 CAAGGTGGCATAACCGGAGGCGTA-TATTGGGATGATGGTCCTAATT-TCGACGGTGTAA 585
|||||| | || |||| | || ||||||||||||||||||| | || || ||||
Sbjct 544 GTAGGTGGT-TGG--GGCGGCG-ACTACTGGGATGATGGTCCTAATTAT-GATGGCGTAA 598
Query 586 GAAAGGTGTATGTTACTTTTACTGAA-ACTCATATAAGGAGTATGAACATTGACTATGAC 644
|||||||||||||||||| | |||| ||| |||||||||||| ||||| ||||| ||
Sbjct 599 GAAAGGTGTATGTTACTTACA-TGAACACTTGTATAAGGAGTATCAACATCGACTACGAA 657
Query 645 CAAGATGGCCAAGTGGTAACACGTTCTCACGGGATGAAGAATGGAGAAACACAGGAGTTT 704
|||| || ||||| || ||| |||| ||||||| ||| | ||||| ||| ||||||||
Sbjct 658 AAAGACGGACAAGTTGTGACAAGTTCCCACGGGAACAAGGAGGGAGAGACAGAGGAGTTT 717
Query 705 GCTG-TGGACTTTCCGAATGAATATATGACATCTGTGGAGGGTACATACGAC-CATATC- 761
|| | | |||| ||| ||||||| | ||| ||| ||||||||||| |||||| || |||
Sbjct 718 GC-GATAGACTATCCAAATGAATTTTTGATATCAGTGGAGGGTACGTACGACTCA-ATCC 775
Query 762 -AGTGAGGG-TAACTA--TTT-GGTTC-TTACGTCATTGACTTTCAAAACATCAAAAGGA 815
| | | | | || ||| ||| | ||||||| |||| |||||||||||| |||||
Sbjct 776 TATTCCCCGATCATTACGTTTTGGT-CATTACGTCCTTGAGTTTCAAAACATCGAAAGGT 834
Query 816 AGAATCTCTCAGACATTTGGA-TTG-GTCATTGGAACCAAGTTTGTGTTGGAGAGTAAAG 873
||||| |||| |||| ||| ||| ||| | || ||||| |||||| ||||||| |||
Sbjct 835 AGAATATCTCCCACATATGGGGTTGTGTC-T-GGTACCAAATTTGTGCTGGAGAGCCAAG 892
Query 874 GTAATGTTATTGTCGGGTTCCATGGAAGGGATGGTGGAT-CTTTTGATGCTATCGGAGTT 932
|||||| |||||||| ||| |||| || ||||||| | |||| |||||||| || |||
Sbjct 893 GTAATGCAATTGTCGGATTCTATGGGAGAAATGGTGG-TGCTTTCGATGCTATTGGGGTT 951
Query 933 TATTTCTCTCC 943
|||||||||||
Sbjct 952 TATTTCTCTCC 962
> AT1G60110.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:22168502-22170649 FORWARD LENGTH=1797
Length=1797
Score = 65.8 bits (35), Expect = 8e-10
Identities = 47/52 (90%), Gaps = 4/52 (8%)
Strand=Plus/Plus
Query 787 CGTCATTGACTTTCAAAACATCAAAAGGAAGAATCT-CT-CAGACATTTGGA 836
|||||||||||||||||||||||||||| |||| || || || |||||||||
Sbjct 1178 CGTCATTGACTTTCAAAACATCAAAAGGGAGAA-CTTCTTCA-ACATTTGGA 1227
> AT1G60130.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:22174179-22176321 FORWARD LENGTH=1803
Length=1803
Score = 65.8 bits (35), Expect = 8e-10
Identities = 47/52 (90%), Gaps = 4/52 (8%)
Strand=Plus/Plus
Query 787 CGTCATTGACTTTCAAAACATCAAAAGGAAGAATCT-CT-CAGACATTTGGA 836
|||||||||||||||||||||||||||| |||| || || || |||||||||
Sbjct 1181 CGTCATTGACTTTCAAAACATCAAAAGGGAGAA-CTTCTTCA-ACATTTGGA 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49731805530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5