BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474325
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52070.1 | Symbols: | Mannose-binding lectin superfamily pr... 1487 0.0
AT1G52060.1 | Symbols: | Mannose-binding lectin superfamily pr... 1003 0.0
> AT1G52070.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:19364888-19366924 REVERSE LENGTH=1224
Length=1224
Score = 1487 bits (805), Expect = 0.0
Identities = 949/1019 (93%), Gaps = 8/1019 (1%)
Strand=Plus/Plus
Query 2 AATCGCCACAAAACAACGATCATGTTTATCATCTATATATTTCTTTTTCTCTCCTCAGCC 61
|||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 4 AATCACCACAGCACAGCGATCATGGTTATCATCTATATATTTCTTTTTCTCTCCTCAGCC 63
Query 62 ATTATAGATTCAAATGGGTTTGCAAAGGCCCAAAAGTTGGAAGCAATCGGTGGGAAgggg 121
||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 64 ATTATAGATTCAACTGGGTTGGCAAAGGCCCAAAAGTTGGATGCAATTGGTGGGAAGGGA 123
Query 122 gggAAGCAGTGGGATGATGGAGGC-GACCATGACAATGTAGCAAAAGTTTATATAAGAGG 180
|| ||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 124 GGCAAGCAGTGGGACGATGGA-GCTGACCATGACAATGTAGCAAAGGTTTATATAAGAGG 182
Query 181 TGGTCTTGAAGGCATACAATACATCAAATTTGATTACGTCAAAGATGGACAATCTATAGA 240
|||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 183 TGGTCTTGAAGGCATACAATACATCAAATTTGATTATGTCAAAGATGGAAAAACTATAGA 242
Query 241 TGGATCCATCCATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCT 300
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TGCATCTATCCATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCA 302
Query 301 AAATAGTGAATATATTGTATCTCTTGATGGCTACTACGACAAAACTGGTGTGATGCAAGC 360
||| |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 303 AAACAGTGAATATATTGTATCTGTTGATGGCTACTACGACAAATCTGGTACGATGCAAGC 362
Query 361 ACTTGAATTCAAAACCAATCTCAAGACTTCTGAATTGATTGGGTATCCTAAGGGTACTAC 420
|||||||||||||||||| || |||||||||||| ||||||| ||||| |||||||||||
Sbjct 363 ACTTGAATTCAAAACCAACCTGAAGACTTCTGAAGTGATTGGATATCCAAAGGGTACTAC 422
Query 421 AAAATTTTCACTCGGAGGAGTCAATGGCAAAATGATGATTGGCTTCCATGGATCCGCTGG 480
||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 423 AAAGTTTTCACTCGGTGGAGTCAATGGCAAGATGGTGATTGGCTTCCATGGATCTGCTGG 482
Query 481 GAAAGCCCTAAACTCCATTGGGGCATATTTAACAACAGCTCCTCCTACTAAGTCAGAACT 540
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 483 GAAAGTCCTAAACTCCATTGGAGCATATTTAACAACAGCTCCTCCTACTAAGTCACAACT 542
Query 541 CGTAGGTGGTCTAACCGGAGGCGAACCTTGGGATGATGG-TCCTAATAATGATGGCGTGA 599
|||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct 543 TGTAGGTGGTCTAACCGGAGGCGAACCTTGGGATGATGGCTC-TAATTATGATGGCGTGA 601
Query 600 AAAAGATATCTGTTACTTACACTACCACTCTTATAAGGAGTATCAATGTTGACTATGAAA 659
||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct 602 AAAAGATATCTGTCACTTACATTAGCACTCTTATAAGGAGTATCAATGTGGACTATGAAA 661
Query 660 AGGACGGCCAAGTTGTAACACGTTACCATGGGATGAAGAATGGAGATACAGAGGAGTTTG 719
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 662 AGGACGGCCAAGTTGTAACACGTTACCACGGGATGAAGAATGGAGATACAGAGGAGTTTG 721
Query 720 TGGTAGACTATCCAAATGAATATTTGATATCAGTGGAGGGTACATACAACACAATCCCTG 779
|| |||||||||||||||| |||||||||||||||||||| || ||||||| | |||| |
Sbjct 722 TGATAGACTATCCAAATGAGTATTTGATATCAGTGGAGGGAACCTACAACATACTCCCCG 781
Query 780 ATGATAACGTTTTGGTCATTAGATCGTTGATCTTCAAAACATCAAAAGGGAGAATCTCTC 839
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 782 ATGATAACGTTTTGGTCATTAGGTCGTTGATTTTCAAAACATCAAAAGGGAGAATCTCTC 841
Query 840 CCACATATGGGTTTGTGTCGGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTG 899
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CCACATATGGGTTTGTGTCAGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTG 901
Query 900 TTGGATT-TCATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGGGTTTATTTCTCTCCG 958
||||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 902 TTGGATTCT-ATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGAGTTTACTTCTCTCCA 960
Query 959 ATTCCTTCGTAATTCAAAACTATAATGACTATAAAACCATA-GAGTTCGATGGAAATAT 1016
||||||||||||||| | ||||||| | ||||||||||||| | ||| |||||||||||
Sbjct 961 ATTCCTTCGTAATTCGAGACTATAAAGGCTATAAAACCATATG-GTTAGATGGAAATAT 1018
> AT1G52060.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:19359039-19360675 REVERSE LENGTH=969
Length=969
Score = 1003 bits (543), Expect = 0.0
Identities = 829/964 (86%), Gaps = 31/964 (3%)
Strand=Plus/Plus
Query 14 ACAACGATCATG-TTTATCATCTATATATTTCTTTTTCTCTCCTCAGCCATTATAGATTC 72
||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 16 ACATCGATCATGATTT-TCATCTATATATTTCTCTTTCTCTCCTCAGCCATTATAGATTC 74
Query 73 AAATGGGTTTGCAAAGGCCCAAAAGTTGGAAGC-AATCGGTGGGAAgggggggAAGCAGT 131
|||||||||||||| ||||||||||||||| || || |||||||| ||||| ||| | |
Sbjct 75 AAATGGGTTTGCAATGGCCCAAAAGTTGGAGGCTAA-GGGTGGGAAAGGGGGCAAGGAAT 133
Query 132 GGGATGATGGAGGCGACCATGACAATGTAGCAAAAGTTTATATAAGAGGTGGTCTTGAAG 191
|||||||||||| || |||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 134 GGGATGATGGAGCCGGCCATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAG 193
Query 192 GCATACAATACATCAAATTTGATTACGTCAAAGATGGACAATCTATAGATGGATCCATCC 251
||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||| ||||
Sbjct 194 GCATACAATACATCAAATTTGATTATGTCAAAGATGGACAGTCTGTAGAGGGATCAATCC 253
Query 252 ATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCTAAATAGTGAAT 311
|||||||||||||||| ||||||||||| | ||| |||||||| |||| ||| |||||
Sbjct 254 ATGGTGTTTCGGGTAGTGGTTTCACACAAATGTTCGAGATTGACTATCAAAACGGTGAAC 313
Query 312 ATATTGTATCTCTTGATGGCTACTACGACAAAACTGGTGTGATGCAAGCACTTGAATTCA 371
||||||||||| |||| || |||| |||||| | |||||||||||||||||||||||||
Sbjct 314 ATATTGTATCTGTTGACGGTTACTTTGACAAATCCGGTGTGATGCAAGCACTTGAATTCA 373
Query 372 AAACCAATCTCAAGACTTCTGAATTGATTGGGTATCCTAAGGGTACTACAAAATTTTCAC 431
||||||| | ||||| |||||| ||||||| || || ||| ||| |||||| |||||||
Sbjct 374 AAACCAACCGGAAGACCTCTGAAGTGATTGGATACCCAAAGAGTAATACAAAGTTTTCAC 433
Query 432 TCGGAGGAGTCAATGGCAAA-ATGATGATTGGCTTCCATGGATCCGCTGGGAAAGCCCTA 490
| || || || || || ||| ||||| | |||||||||||||||||| ||||||||||||
Sbjct 434 TTGGTGGGGTAAACGG-AAAGATGATCAATGGCTTCCATGGATCCGCGGGGAAAGCCCTA 492
Query 491 AACTCCATTGGGGCATATTTAACAACAGCTCCTCCTACTAAGTCAGAACTCGTAGGTGGT 550
|| |||||||| || |||||||||| || |||||||||||||||||||||||||||||||
Sbjct 493 AATTCCATTGGAGCGTATTTAACAAAAGTTCCTCCTACTAAGTCAGAACTCGTAGGTGGT 552
Query 551 CTAACCGGAGGCGA--ACCTTGGGATGATGGTCCTAATAATGATGGCGTGAA-AAAGATA 607
| || ||||| || | ||||||||||||||||| |||||||||| || |||| |
Sbjct 553 -TGG--GGCGGCGACTAC-T-GGGATGATGGTCCTAATTATGATGGCGT-AAGAAAGGTG 606
Query 608 TCTGTTACTTACACT-ACCACTCT-TATAAGGAGTATCAATGTTGACTATGAAAAGGACG 665
| ||||||||||| | | |||| | ||||||||||||||| | ||||| ||||| ||||
Sbjct 607 TATGTTACTTACA-TGAACACT-TGTATAAGGAGTATCAACATCGACTACGAAAAAGACG 664
Query 666 GCCAAGTTGTAACACGTTACCATGGGATGAAGAATGGAGATACAGAGGAGTTTGTGGTAG 725
| |||||||| ||| ||| ||| |||| ||| | ||||| ||||||||||||| | |||
Sbjct 665 GACAAGTTGTGACAAGTTCCCACGGGAACAAGGAGGGAGAGACAGAGGAGTTTGCGATAG 724
Query 726 ACTATCCAAATGAATATTTGATATCAGTGGAGGGTACATACAACACAATCCC-T-----G 779
||||||||||||||| ||||||||||||||||||||| ||| || |||||| | |
Sbjct 725 ACTATCCAAATGAATTTTTGATATCAGTGGAGGGTACGTACGACTCAATCCTATTCCCCG 784
Query 780 ATGATAACGTTTTGGTCATTA-GATCGTTGA-TCTTCAAAACATCAAAAGGGAGAATCTC 837
|| || ||||||||||||||| | || |||| | ||||||||||| ||||| ||||| ||
Sbjct 785 ATCATTACGTTTTGGTCATTACG-TCCTTGAGT-TTCAAAACATCGAAAGGTAGAATATC 842
Query 838 TCCCACATATGGGTTTGTGTCGGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTAT 897
||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct 843 TCCCACATATGGGGTTGTGTCTGGTACCAAATTTGTGCTGGAGAGCCAAGGTAATGCAAT 902
Query 898 TGTTGGATT-TCATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGGGTTTATTTCTCTC 956
||| ||||| | ||||| | |||||||||||||||| ||||| ||||||||||||||||
Sbjct 903 TGTCGGATTCT-ATGGGAGAAATGGTGGTGCTTTCGATGCTATTGGGGTTTATTTCTCTC 961
Query 957 CGAT 960
||||
Sbjct 962 CGAT 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56174409855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5