BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474325

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52070.1 | Symbols:  | Mannose-binding lectin superfamily pr...  1487    0.0  
  AT1G52060.1 | Symbols:  | Mannose-binding lectin superfamily pr...  1003    0.0  


> AT1G52070.1 | Symbols:  | Mannose-binding lectin superfamily 
protein | chr1:19364888-19366924 REVERSE LENGTH=1224
Length=1224

 Score = 1487 bits (805),  Expect = 0.0
 Identities = 949/1019 (93%), Gaps = 8/1019 (1%)
 Strand=Plus/Plus

Query  2     AATCGCCACAAAACAACGATCATGTTTATCATCTATATATTTCTTTTTCTCTCCTCAGCC  61
             |||| |||||  ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  4     AATCACCACAGCACAGCGATCATGGTTATCATCTATATATTTCTTTTTCTCTCCTCAGCC  63

Query  62    ATTATAGATTCAAATGGGTTTGCAAAGGCCCAAAAGTTGGAAGCAATCGGTGGGAAgggg  121
             ||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||| 
Sbjct  64    ATTATAGATTCAACTGGGTTGGCAAAGGCCCAAAAGTTGGATGCAATTGGTGGGAAGGGA  123

Query  122   gggAAGCAGTGGGATGATGGAGGC-GACCATGACAATGTAGCAAAAGTTTATATAAGAGG  180
             || ||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||
Sbjct  124   GGCAAGCAGTGGGACGATGGA-GCTGACCATGACAATGTAGCAAAGGTTTATATAAGAGG  182

Query  181   TGGTCTTGAAGGCATACAATACATCAAATTTGATTACGTCAAAGATGGACAATCTATAGA  240
             |||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct  183   TGGTCTTGAAGGCATACAATACATCAAATTTGATTATGTCAAAGATGGAAAAACTATAGA  242

Query  241   TGGATCCATCCATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCT  300
             || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  243   TGCATCTATCCATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCA  302

Query  301   AAATAGTGAATATATTGTATCTCTTGATGGCTACTACGACAAAACTGGTGTGATGCAAGC  360
             ||| |||||||||||||||||| |||||||||||||||||||| |||||  |||||||||
Sbjct  303   AAACAGTGAATATATTGTATCTGTTGATGGCTACTACGACAAATCTGGTACGATGCAAGC  362

Query  361   ACTTGAATTCAAAACCAATCTCAAGACTTCTGAATTGATTGGGTATCCTAAGGGTACTAC  420
             |||||||||||||||||| || |||||||||||| ||||||| ||||| |||||||||||
Sbjct  363   ACTTGAATTCAAAACCAACCTGAAGACTTCTGAAGTGATTGGATATCCAAAGGGTACTAC  422

Query  421   AAAATTTTCACTCGGAGGAGTCAATGGCAAAATGATGATTGGCTTCCATGGATCCGCTGG  480
             ||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct  423   AAAGTTTTCACTCGGTGGAGTCAATGGCAAGATGGTGATTGGCTTCCATGGATCTGCTGG  482

Query  481   GAAAGCCCTAAACTCCATTGGGGCATATTTAACAACAGCTCCTCCTACTAAGTCAGAACT  540
             ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct  483   GAAAGTCCTAAACTCCATTGGAGCATATTTAACAACAGCTCCTCCTACTAAGTCACAACT  542

Query  541   CGTAGGTGGTCTAACCGGAGGCGAACCTTGGGATGATGG-TCCTAATAATGATGGCGTGA  599
              |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct  543   TGTAGGTGGTCTAACCGGAGGCGAACCTTGGGATGATGGCTC-TAATTATGATGGCGTGA  601

Query  600   AAAAGATATCTGTTACTTACACTACCACTCTTATAAGGAGTATCAATGTTGACTATGAAA  659
             ||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct  602   AAAAGATATCTGTCACTTACATTAGCACTCTTATAAGGAGTATCAATGTGGACTATGAAA  661

Query  660   AGGACGGCCAAGTTGTAACACGTTACCATGGGATGAAGAATGGAGATACAGAGGAGTTTG  719
             |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  662   AGGACGGCCAAGTTGTAACACGTTACCACGGGATGAAGAATGGAGATACAGAGGAGTTTG  721

Query  720   TGGTAGACTATCCAAATGAATATTTGATATCAGTGGAGGGTACATACAACACAATCCCTG  779
             || |||||||||||||||| |||||||||||||||||||| || ||||||| | |||| |
Sbjct  722   TGATAGACTATCCAAATGAGTATTTGATATCAGTGGAGGGAACCTACAACATACTCCCCG  781

Query  780   ATGATAACGTTTTGGTCATTAGATCGTTGATCTTCAAAACATCAAAAGGGAGAATCTCTC  839
             |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct  782   ATGATAACGTTTTGGTCATTAGGTCGTTGATTTTCAAAACATCAAAAGGGAGAATCTCTC  841

Query  840   CCACATATGGGTTTGTGTCGGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTG  899
             ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  842   CCACATATGGGTTTGTGTCAGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTG  901

Query  900   TTGGATT-TCATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGGGTTTATTTCTCTCCG  958
             ||||||| | |||||||||||||||||||||||||||||||||| ||||| |||||||| 
Sbjct  902   TTGGATTCT-ATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGAGTTTACTTCTCTCCA  960

Query  959   ATTCCTTCGTAATTCAAAACTATAATGACTATAAAACCATA-GAGTTCGATGGAAATAT  1016
             ||||||||||||||| | ||||||| | ||||||||||||| | ||| |||||||||||
Sbjct  961   ATTCCTTCGTAATTCGAGACTATAAAGGCTATAAAACCATATG-GTTAGATGGAAATAT  1018


> AT1G52060.1 | Symbols:  | Mannose-binding lectin superfamily 
protein | chr1:19359039-19360675 REVERSE LENGTH=969
Length=969

 Score = 1003 bits (543),  Expect = 0.0
 Identities = 829/964 (86%), Gaps = 31/964 (3%)
 Strand=Plus/Plus

Query  14   ACAACGATCATG-TTTATCATCTATATATTTCTTTTTCTCTCCTCAGCCATTATAGATTC  72
            ||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct  16   ACATCGATCATGATTT-TCATCTATATATTTCTCTTTCTCTCCTCAGCCATTATAGATTC  74

Query  73   AAATGGGTTTGCAAAGGCCCAAAAGTTGGAAGC-AATCGGTGGGAAgggggggAAGCAGT  131
            |||||||||||||| ||||||||||||||| || ||  |||||||| ||||| ||| | |
Sbjct  75   AAATGGGTTTGCAATGGCCCAAAAGTTGGAGGCTAA-GGGTGGGAAAGGGGGCAAGGAAT  133

Query  132  GGGATGATGGAGGCGACCATGACAATGTAGCAAAAGTTTATATAAGAGGTGGTCTTGAAG  191
            |||||||||||| || |||||| ||||||||||||||||||||| |||||||||||||||
Sbjct  134  GGGATGATGGAGCCGGCCATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAG  193

Query  192  GCATACAATACATCAAATTTGATTACGTCAAAGATGGACAATCTATAGATGGATCCATCC  251
            ||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||| ||||
Sbjct  194  GCATACAATACATCAAATTTGATTATGTCAAAGATGGACAGTCTGTAGAGGGATCAATCC  253

Query  252  ATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCTAAATAGTGAAT  311
            |||||||||||||||| ||||||||||| | ||| |||||||| |||| |||  ||||| 
Sbjct  254  ATGGTGTTTCGGGTAGTGGTTTCACACAAATGTTCGAGATTGACTATCAAAACGGTGAAC  313

Query  312  ATATTGTATCTCTTGATGGCTACTACGACAAAACTGGTGTGATGCAAGCACTTGAATTCA  371
            ||||||||||| |||| || ||||  |||||| | |||||||||||||||||||||||||
Sbjct  314  ATATTGTATCTGTTGACGGTTACTTTGACAAATCCGGTGTGATGCAAGCACTTGAATTCA  373

Query  372  AAACCAATCTCAAGACTTCTGAATTGATTGGGTATCCTAAGGGTACTACAAAATTTTCAC  431
            ||||||| |  ||||| |||||| ||||||| || || ||| ||| |||||| |||||||
Sbjct  374  AAACCAACCGGAAGACCTCTGAAGTGATTGGATACCCAAAGAGTAATACAAAGTTTTCAC  433

Query  432  TCGGAGGAGTCAATGGCAAA-ATGATGATTGGCTTCCATGGATCCGCTGGGAAAGCCCTA  490
            | || || || || || ||| ||||| | |||||||||||||||||| ||||||||||||
Sbjct  434  TTGGTGGGGTAAACGG-AAAGATGATCAATGGCTTCCATGGATCCGCGGGGAAAGCCCTA  492

Query  491  AACTCCATTGGGGCATATTTAACAACAGCTCCTCCTACTAAGTCAGAACTCGTAGGTGGT  550
            || |||||||| || |||||||||| || |||||||||||||||||||||||||||||||
Sbjct  493  AATTCCATTGGAGCGTATTTAACAAAAGTTCCTCCTACTAAGTCAGAACTCGTAGGTGGT  552

Query  551  CTAACCGGAGGCGA--ACCTTGGGATGATGGTCCTAATAATGATGGCGTGAA-AAAGATA  607
             |    || |||||  || | ||||||||||||||||| |||||||||| || |||| | 
Sbjct  553  -TGG--GGCGGCGACTAC-T-GGGATGATGGTCCTAATTATGATGGCGT-AAGAAAGGTG  606

Query  608  TCTGTTACTTACACT-ACCACTCT-TATAAGGAGTATCAATGTTGACTATGAAAAGGACG  665
            | ||||||||||| | | |||| | |||||||||||||||  | ||||| ||||| ||||
Sbjct  607  TATGTTACTTACA-TGAACACT-TGTATAAGGAGTATCAACATCGACTACGAAAAAGACG  664

Query  666  GCCAAGTTGTAACACGTTACCATGGGATGAAGAATGGAGATACAGAGGAGTTTGTGGTAG  725
            | |||||||| ||| ||| ||| ||||  ||| | ||||| ||||||||||||| | |||
Sbjct  665  GACAAGTTGTGACAAGTTCCCACGGGAACAAGGAGGGAGAGACAGAGGAGTTTGCGATAG  724

Query  726  ACTATCCAAATGAATATTTGATATCAGTGGAGGGTACATACAACACAATCCC-T-----G  779
            ||||||||||||||| ||||||||||||||||||||| ||| || ||||||  |     |
Sbjct  725  ACTATCCAAATGAATTTTTGATATCAGTGGAGGGTACGTACGACTCAATCCTATTCCCCG  784

Query  780  ATGATAACGTTTTGGTCATTA-GATCGTTGA-TCTTCAAAACATCAAAAGGGAGAATCTC  837
            || || ||||||||||||||| | || |||| | ||||||||||| ||||| ||||| ||
Sbjct  785  ATCATTACGTTTTGGTCATTACG-TCCTTGAGT-TTCAAAACATCGAAAGGTAGAATATC  842

Query  838  TCCCACATATGGGTTTGTGTCGGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTAT  897
            ||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct  843  TCCCACATATGGGGTTGTGTCTGGTACCAAATTTGTGCTGGAGAGCCAAGGTAATGCAAT  902

Query  898  TGTTGGATT-TCATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGGGTTTATTTCTCTC  956
            ||| ||||| | ||||| |  |||||||||||||||| ||||| ||||||||||||||||
Sbjct  903  TGTCGGATTCT-ATGGGAGAAATGGTGGTGCTTTCGATGCTATTGGGGTTTATTTCTCTC  961

Query  957  CGAT  960
            ||||
Sbjct  962  CGAT  965



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56174409855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5