BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474325 Length=1145 Score E Sequences producing significant alignments: (Bits) Value AT1G52070.1 | Symbols: | Mannose-binding lectin superfamily pr... 1487 0.0 AT1G52060.1 | Symbols: | Mannose-binding lectin superfamily pr... 1003 0.0 > AT1G52070.1 | Symbols: | Mannose-binding lectin superfamily protein | chr1:19364888-19366924 REVERSE LENGTH=1224 Length=1224 Score = 1487 bits (805), Expect = 0.0 Identities = 949/1019 (93%), Gaps = 8/1019 (1%) Strand=Plus/Plus Query 2 AATCGCCACAAAACAACGATCATGTTTATCATCTATATATTTCTTTTTCTCTCCTCAGCC 61 |||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 4 AATCACCACAGCACAGCGATCATGGTTATCATCTATATATTTCTTTTTCTCTCCTCAGCC 63 Query 62 ATTATAGATTCAAATGGGTTTGCAAAGGCCCAAAAGTTGGAAGCAATCGGTGGGAAgggg 121 ||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||| Sbjct 64 ATTATAGATTCAACTGGGTTGGCAAAGGCCCAAAAGTTGGATGCAATTGGTGGGAAGGGA 123 Query 122 gggAAGCAGTGGGATGATGGAGGC-GACCATGACAATGTAGCAAAAGTTTATATAAGAGG 180 || ||||||||||| |||||| || |||||||||||||||||||| |||||||||||||| Sbjct 124 GGCAAGCAGTGGGACGATGGA-GCTGACCATGACAATGTAGCAAAGGTTTATATAAGAGG 182 Query 181 TGGTCTTGAAGGCATACAATACATCAAATTTGATTACGTCAAAGATGGACAATCTATAGA 240 |||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||| Sbjct 183 TGGTCTTGAAGGCATACAATACATCAAATTTGATTATGTCAAAGATGGAAAAACTATAGA 242 Query 241 TGGATCCATCCATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCT 300 || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 TGCATCTATCCATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCA 302 Query 301 AAATAGTGAATATATTGTATCTCTTGATGGCTACTACGACAAAACTGGTGTGATGCAAGC 360 ||| |||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct 303 AAACAGTGAATATATTGTATCTGTTGATGGCTACTACGACAAATCTGGTACGATGCAAGC 362 Query 361 ACTTGAATTCAAAACCAATCTCAAGACTTCTGAATTGATTGGGTATCCTAAGGGTACTAC 420 |||||||||||||||||| || |||||||||||| ||||||| ||||| ||||||||||| Sbjct 363 ACTTGAATTCAAAACCAACCTGAAGACTTCTGAAGTGATTGGATATCCAAAGGGTACTAC 422 Query 421 AAAATTTTCACTCGGAGGAGTCAATGGCAAAATGATGATTGGCTTCCATGGATCCGCTGG 480 ||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||| Sbjct 423 AAAGTTTTCACTCGGTGGAGTCAATGGCAAGATGGTGATTGGCTTCCATGGATCTGCTGG 482 Query 481 GAAAGCCCTAAACTCCATTGGGGCATATTTAACAACAGCTCCTCCTACTAAGTCAGAACT 540 ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 483 GAAAGTCCTAAACTCCATTGGAGCATATTTAACAACAGCTCCTCCTACTAAGTCACAACT 542 Query 541 CGTAGGTGGTCTAACCGGAGGCGAACCTTGGGATGATGG-TCCTAATAATGATGGCGTGA 599 |||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| Sbjct 543 TGTAGGTGGTCTAACCGGAGGCGAACCTTGGGATGATGGCTC-TAATTATGATGGCGTGA 601 Query 600 AAAAGATATCTGTTACTTACACTACCACTCTTATAAGGAGTATCAATGTTGACTATGAAA 659 ||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||||| Sbjct 602 AAAAGATATCTGTCACTTACATTAGCACTCTTATAAGGAGTATCAATGTGGACTATGAAA 661 Query 660 AGGACGGCCAAGTTGTAACACGTTACCATGGGATGAAGAATGGAGATACAGAGGAGTTTG 719 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 662 AGGACGGCCAAGTTGTAACACGTTACCACGGGATGAAGAATGGAGATACAGAGGAGTTTG 721 Query 720 TGGTAGACTATCCAAATGAATATTTGATATCAGTGGAGGGTACATACAACACAATCCCTG 779 || |||||||||||||||| |||||||||||||||||||| || ||||||| | |||| | Sbjct 722 TGATAGACTATCCAAATGAGTATTTGATATCAGTGGAGGGAACCTACAACATACTCCCCG 781 Query 780 ATGATAACGTTTTGGTCATTAGATCGTTGATCTTCAAAACATCAAAAGGGAGAATCTCTC 839 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 782 ATGATAACGTTTTGGTCATTAGGTCGTTGATTTTCAAAACATCAAAAGGGAGAATCTCTC 841 Query 840 CCACATATGGGTTTGTGTCGGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTG 899 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 842 CCACATATGGGTTTGTGTCAGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTG 901 Query 900 TTGGATT-TCATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGGGTTTATTTCTCTCCG 958 ||||||| | |||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 902 TTGGATTCT-ATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGAGTTTACTTCTCTCCA 960 Query 959 ATTCCTTCGTAATTCAAAACTATAATGACTATAAAACCATA-GAGTTCGATGGAAATAT 1016 ||||||||||||||| | ||||||| | ||||||||||||| | ||| ||||||||||| Sbjct 961 ATTCCTTCGTAATTCGAGACTATAAAGGCTATAAAACCATATG-GTTAGATGGAAATAT 1018 > AT1G52060.1 | Symbols: | Mannose-binding lectin superfamily protein | chr1:19359039-19360675 REVERSE LENGTH=969 Length=969 Score = 1003 bits (543), Expect = 0.0 Identities = 829/964 (86%), Gaps = 31/964 (3%) Strand=Plus/Plus Query 14 ACAACGATCATG-TTTATCATCTATATATTTCTTTTTCTCTCCTCAGCCATTATAGATTC 72 ||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 16 ACATCGATCATGATTT-TCATCTATATATTTCTCTTTCTCTCCTCAGCCATTATAGATTC 74 Query 73 AAATGGGTTTGCAAAGGCCCAAAAGTTGGAAGC-AATCGGTGGGAAgggggggAAGCAGT 131 |||||||||||||| ||||||||||||||| || || |||||||| ||||| ||| | | Sbjct 75 AAATGGGTTTGCAATGGCCCAAAAGTTGGAGGCTAA-GGGTGGGAAAGGGGGCAAGGAAT 133 Query 132 GGGATGATGGAGGCGACCATGACAATGTAGCAAAAGTTTATATAAGAGGTGGTCTTGAAG 191 |||||||||||| || |||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 134 GGGATGATGGAGCCGGCCATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAG 193 Query 192 GCATACAATACATCAAATTTGATTACGTCAAAGATGGACAATCTATAGATGGATCCATCC 251 ||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||| |||| Sbjct 194 GCATACAATACATCAAATTTGATTATGTCAAAGATGGACAGTCTGTAGAGGGATCAATCC 253 Query 252 ATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCTAAATAGTGAAT 311 |||||||||||||||| ||||||||||| | ||| |||||||| |||| ||| ||||| Sbjct 254 ATGGTGTTTCGGGTAGTGGTTTCACACAAATGTTCGAGATTGACTATCAAAACGGTGAAC 313 Query 312 ATATTGTATCTCTTGATGGCTACTACGACAAAACTGGTGTGATGCAAGCACTTGAATTCA 371 ||||||||||| |||| || |||| |||||| | ||||||||||||||||||||||||| Sbjct 314 ATATTGTATCTGTTGACGGTTACTTTGACAAATCCGGTGTGATGCAAGCACTTGAATTCA 373 Query 372 AAACCAATCTCAAGACTTCTGAATTGATTGGGTATCCTAAGGGTACTACAAAATTTTCAC 431 ||||||| | ||||| |||||| ||||||| || || ||| ||| |||||| ||||||| Sbjct 374 AAACCAACCGGAAGACCTCTGAAGTGATTGGATACCCAAAGAGTAATACAAAGTTTTCAC 433 Query 432 TCGGAGGAGTCAATGGCAAA-ATGATGATTGGCTTCCATGGATCCGCTGGGAAAGCCCTA 490 | || || || || || ||| ||||| | |||||||||||||||||| |||||||||||| Sbjct 434 TTGGTGGGGTAAACGG-AAAGATGATCAATGGCTTCCATGGATCCGCGGGGAAAGCCCTA 492 Query 491 AACTCCATTGGGGCATATTTAACAACAGCTCCTCCTACTAAGTCAGAACTCGTAGGTGGT 550 || |||||||| || |||||||||| || ||||||||||||||||||||||||||||||| Sbjct 493 AATTCCATTGGAGCGTATTTAACAAAAGTTCCTCCTACTAAGTCAGAACTCGTAGGTGGT 552 Query 551 CTAACCGGAGGCGA--ACCTTGGGATGATGGTCCTAATAATGATGGCGTGAA-AAAGATA 607 | || ||||| || | ||||||||||||||||| |||||||||| || |||| | Sbjct 553 -TGG--GGCGGCGACTAC-T-GGGATGATGGTCCTAATTATGATGGCGT-AAGAAAGGTG 606 Query 608 TCTGTTACTTACACT-ACCACTCT-TATAAGGAGTATCAATGTTGACTATGAAAAGGACG 665 | ||||||||||| | | |||| | ||||||||||||||| | ||||| ||||| |||| Sbjct 607 TATGTTACTTACA-TGAACACT-TGTATAAGGAGTATCAACATCGACTACGAAAAAGACG 664 Query 666 GCCAAGTTGTAACACGTTACCATGGGATGAAGAATGGAGATACAGAGGAGTTTGTGGTAG 725 | |||||||| ||| ||| ||| |||| ||| | ||||| ||||||||||||| | ||| Sbjct 665 GACAAGTTGTGACAAGTTCCCACGGGAACAAGGAGGGAGAGACAGAGGAGTTTGCGATAG 724 Query 726 ACTATCCAAATGAATATTTGATATCAGTGGAGGGTACATACAACACAATCCC-T-----G 779 ||||||||||||||| ||||||||||||||||||||| ||| || |||||| | | Sbjct 725 ACTATCCAAATGAATTTTTGATATCAGTGGAGGGTACGTACGACTCAATCCTATTCCCCG 784 Query 780 ATGATAACGTTTTGGTCATTA-GATCGTTGA-TCTTCAAAACATCAAAAGGGAGAATCTC 837 || || ||||||||||||||| | || |||| | ||||||||||| ||||| ||||| || Sbjct 785 ATCATTACGTTTTGGTCATTACG-TCCTTGAGT-TTCAAAACATCGAAAGGTAGAATATC 842 Query 838 TCCCACATATGGGTTTGTGTCGGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTAT 897 ||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| || Sbjct 843 TCCCACATATGGGGTTGTGTCTGGTACCAAATTTGTGCTGGAGAGCCAAGGTAATGCAAT 902 Query 898 TGTTGGATT-TCATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGGGTTTATTTCTCTC 956 ||| ||||| | ||||| | |||||||||||||||| ||||| |||||||||||||||| Sbjct 903 TGTCGGATTCT-ATGGGAGAAATGGTGGTGCTTTCGATGCTATTGGGGTTTATTTCTCTC 961 Query 957 CGAT 960 |||| Sbjct 962 CGAT 965 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56174409855 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5