BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474326
Length=2065
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52080.1 | Symbols: AR791 | actin binding protein family | c... 2750 0.0
> AT1G52080.1 | Symbols: AR791 | actin binding protein family |
chr1:19369131-19372065 FORWARD LENGTH=2319
Length=2319
Score = 2750 bits (1489), Expect = 0.0
Identities = 1775/1912 (93%), Gaps = 23/1912 (1%)
Strand=Plus/Plus
Query 162 ATTTTTT-ATGGCGTTTCTGATGGAGGTTGACGAAGAAGAAGAGAGATGATCTAGTCTTT 220
||||||| |||||||||||||||||||| || ||||||||||||| ||||| ||||| ||
Sbjct 291 ATTTTTTCATGGCGTTTCTGATGGAGGTCGATGAAGAAGAAGAGATATGATTTAGTCGTT 350
Query 221 CTTCAGATTGAAAAT-TTTGGG-GGtttttttttATTGGTAGTTATGAATATGATCATTA 278
||||| ||||| ||| || ||| |||| ||||||||||||||| ||| || | ||||
Sbjct 351 CTTCAAATTGAGAATCTTGGGGTGGTTGTTTTTTATTGGTAGTCATG---AT--T-ATTA 404
Query 279 CCAAACACAAAAGAGATATAAACTTGTTTGTGCTTCAACTAGGAGCAGCTCTTGCTGTAT 338
||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 405 CCACACACAAAAGAGATATAAACTTGTTGGTGCTTCAATTAGGAGCAGCTCTTGCTGTAT 464
Query 339 CTTTTGCTGGATTTCTCTTTTCCCGATTTAGAAAGAAAACAAAAAGAATTGGACCTACTT 398
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 465 CTTTTGCTGGATTTCTCTTTGCCCGATTTAGAAAGAATACAAAAAGAATTGGACCTACTT 524
Query 399 TGCCTCCTCTTCGACCTCAATCTTCTGATAATGGATACAGAGATTGTTCTAATC-AATCC 457
|||||||||||| |||||| ||||||||||||||||||||||| | ||| || | |||||
Sbjct 525 TGCCTCCTCTTCCACCTCACTCTTCTGATAATGGATACAGAGACTATTCCAA-CAAATCC 583
Query 458 ATTGATAGAGGAGATGCGGGCACGCAGAATACTGATGAAGAGACTTTAATCGGTTTTTCG 517
||||||||| |||||| ||||||| |||| || ||||||||||||||||| ||| |||||
Sbjct 584 ATTGATAGACGAGATGAGGGCACGGAGAAGACGGATGAAGAGACTTTAATTGGTGTTTCG 643
Query 518 CCACGAAGGGAATGTGATCTTGATGAAGAAGATGTGTTTCTTTTACCGGAGTTTGAAGAG 577
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 644 CCACGAAGGGAATGTGATCTTGATGAAAAAGATGTGTTTCTTTTACCGGAGTTTGAAGAG 703
Query 578 GAAGCTAAAAAGTTAGATTTGTTGGTTTGTGATGAGTGTGAAACACCGAGGTCGGATATA 637
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 704 GAAGCTAAAAAGTTAGATTTGTTGGTTTGTGATGACTGTGAAACACCGAGGTCAGATATA 763
Query 638 ACCGCTCCTTTAGCATTTCCGAGCGAAGAGGAAGCTGATTATGAGAATGAGATTAAGCGG 697
|| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 764 ACTGCTCCTTTAGCATTTCCTAGCGAAGAGGAAGCTGATCATGAGAATGAGATTAACCGG 823
Query 698 TTGAGAAACACGGTGAGAGCGCTGCGTgagagagagagaTGTCTTGAGGATAAGTTGTTG 757
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 824 TTGAGAAACACGGTGAGAGCGCTCCGTGAGAGAGAGAGGTGTCTTGAGGATAAGTTGTTA 883
Query 758 GAATACTACAGCCTCAAGGAGCAGCAAAAGATTGCAATGGAACTGAGAAGTAGATTGAAA 817
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 GAATACTACAGCCTTAAGGAGCAGCAAAAGATTGCAATGGAACTGAGAAGTAGATTGAAG 943
Query 818 CTAAACCAGATGGAGACTAAAGTTTTCAATTTTAAGATCAAGTCGTTGCAAGCCGAGAAT 877
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 944 CTAAACCAGATGGAGACTAAAGTTTTCAATTTTAAGATCAAGAAGTTGCAAGCAGAGAAC 1003
Query 878 GAGAAGCTTAAGGC-GCAATGTTCTGAGCATTCGAAAGTTTTGTTGGAGCTTGAAAAGGC 936
|| || |||||||| | |||||| ||||||||| ||||||||||||||||| || | |||
Sbjct 1004 GAAAAACTTAAGGCTG-AATGTTTTGAGCATTCTAAAGTTTTGTTGGAGCTGGATATGGC 1062
Query 937 TATGTCAGAGGTTCAAGTGCTTAAGAAGAAACTGAACATCAATACCCAACAACACGTAGC 996
|| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1063 TAAGTCTCAGGTTCAAGTGCTTAAGAAGAAACTGAACATCAATACTCAACAACACGTAGC 1122
Query 997 GCAGATCTTGTCACTTAAACAACGAGTGGCGAGGCTGCAAGAAGAAGAAATCAAGGATGT 1056
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1123 GCAGATCTTGTCGCTTAAACAACGAGTGGCGAGGCTGCAAGAAGAAGAAATCAAGGCTGT 1182
Query 1057 TTTACCTGATCCGGAAGCTGATAAGATGATGCAGAGGTTAAGGGATTTGGAAGGGGAGAT 1116
|||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1183 GTTACCTGATCTTGAAGCTGATAAGATGATGCAGAGGTTAAGGGATTTGGAAAGTGAGAT 1242
Query 1117 CAACGCGCTTACGGATTCCAACATGAGATTACAGTTTGAGAATTTTGAACTTTCTGAGAA 1176
||||| |||||||||| | |||| |||||||||||||||||||||||| |||||||||||
Sbjct 1243 CAACGAGCTTACGGATACTAACACGAGATTACAGTTTGAGAATTTTGAGCTTTCTGAGAA 1302
Query 1177 GCTAGAGTCTGTTCAAATCATAGCAAATTCAAAGCTTGAGGACCCTGAAGAGGAGATTGA 1236
||| ||||||||||||||||||||||||||||| || ||||| || ||||||||||||
Sbjct 1303 GCTGGAGTCTGTTCAAATCATAGCAAATTCAAAACTGGAGGAACC---AGAGGAGATTGA 1359
Query 1237 GACATTACGCGAAGATGGTAACCGATTGAGGAGTGAAAATGAAGAGTTAAAGAAGGAAGT 1296
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1360 GACATTACGCGAAGATTGTAACCGATTGAGGAGTGAAAATGAAGAGTTAAAGAAGGATGT 1419
Query 1297 CGAGCAGCTTC-AGGGTGATCGATGCACTGACCTCGAGCAGCTCGTTTATCTCAGATGGA 1355
||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1420 CGAGCAGCTTCAAGGG-GATCGATGTACTGACCTCGAGCAGCTCGTTTATCTCAGATGGA 1478
Query 1356 TAAATGCTTGCTTAAGATATGAGCTACGGACTTATCAGCCTCCAG-TGGGTAAAACCGTT 1414
|||||||||||||||||||||||||| ||||||| |||||||| | | |||||||| |||
Sbjct 1479 TAAATGCTTGCTTAAGATATGAGCTAAGGACTTACCAGCCTCCTGCT-GGTAAAACTGTT 1537
Query 1415 GCTAGGGATCTTAGTACTACTCTAAGTCCTACTTCAGAAGAGAAAGCTAAGCAGCTTATC 1474
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||
Sbjct 1538 GCTAGGGATCTTAGTACTACTCTAAGTCCTACTTCAGAGGAGAAAGCAAAGCAACTGATC 1597
Query 1475 CTCGAGTATGCACATAGTGAAGATAACACTGATTATGACCGATGGTCATCTTCGCAGGAA 1534
||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1598 CTCGAATACGCACATAGCGAAGATAACACTGATTATGATCGATGGTCATCTTCGCAGGAA 1657
Query 1535 GAGTCATCAATGATCACTGACTCAATGTTTTTAGATGATTCTTCTGTCGACACTTTGTTT 1594
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1658 GAGTCATCAATGATCACTGACTCAATGTTTTTAGATGATTCTTCTGTTGACACTTTGTTT 1717
Query 1595 GCGACGAAAACAAAAAAGTCAGGAAAGAAGAAGCTGATGCATAAGTTAATGAAGATCTTA 1654
|| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 GCAACTAAAACAAAAAAGACAGGAAAGAAGAAGCTGATGCATAAGTTAATGAAGATCTTA 1777
Query 1655 CACGGTAAAGATACTCAAGACCGCAAGAAGAGAGCTGGTTCATCGGAACCGAGCAGCGCA 1714
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1778 CATGGTAAAGATACTAAAGACAGCAAGAAGAGAGCTGGTTCATCGGAACCGAGCAGCTCA 1837
Query 1715 AACACGGGTGTTCATTCAACTCCTAGGAAGCTTAGAACAACGCATTCAATGGACTTCCAA 1774
||||| ||||||||||||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 1838 AACACTGGTGTTCATTCAACTCCTAGGCAGCTTAGATCAACACATTCAATGGACTTCCAA 1897
Query 1775 ATGTTGATGCGTGGGAAAGACGAGGAAGAAGACTTCAAGGATCACATCAG-GATGCTGCG 1833
|||||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 1898 ATGTTGATGCGTGGCAAAGACGAGGAAGAAGACTTCAAGAATCACATT-GTGATGCTGCG 1956
Query 1834 TCATAAGAGCGAAGCAGCGGGTTCTTCCACCTATGGAGAAGAACACTGTTTGGAATCAGA 1893
|| |||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1957 TCGTAAGAGTGAAGCAGCAGGTTCTTCCACTTATGGAGAAGAACACTGTTTGGAAACAGA 2016
Query 1894 TCAAAACGGGAAGAAAGAGCTGATTAAATTCGCAGATGCGCTTACGAAATCTCGTTCGAC 1953
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 2017 TCAAAACGGGAAGAAAGAGCTGATTAAATTAGCAGATGCGCTTACGAAATCTCGTTCTAC 2076
Query 1954 AAAGAAGCTTCACAAGAAATCTGTGTCCTTCTTTTTCTGAAAGTAAGTAGAAACACTTAA 2013
|||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2077 AAAGAAACTGCATAAGAAATCTGTGTCCTTCTTTTTCTGAAAGTAAGTAGAAACACT-AA 2135
Query 2014 CTTACTTGTAACTGTAACACGCATTGCCTAAAGCTACATATATGTGTGTATA 2065
||||||||| |||||||||||||| |||||||||||||| ||||||| ||||
Sbjct 2136 CTTACTTGTTACTGTAACACGCATCGCCTAAAGCTACATGTATGTGTATATA 2187
Score = 147 bits (79), Expect = 6e-34
Identities = 123/141 (87%), Gaps = 15/141 (11%)
Strand=Plus/Plus
Query 1 TTCATCATCCTCTGTTCAAGATTTCTCCAAGTCATCAAAGTTCTCGCCGTCAAATCAAAT 60
|||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 22 TTCATCATTCTCTGTTCAATATTTCTCCAAGTCATCAAAATTCTCGCCGTCAAATCAAAT 81
Query 61 CATAAAT-T-TG----T---A------GAGAAACATCACATTCCGTGTTTGATCATCGGA 105
||||||| | || | | |||||||||||||||||||||||||||||||||
Sbjct 82 CATAAATCTCTGCTTCTCCAATTTGTTGAGAAACATCACATTCCGTGTTTGATCATCGGA 141
Query 106 CAATGAAATAAACCCACTCAA 126
|||||||||||||||||||||
Sbjct 142 CAATGAAATAAACCCACTCAA 162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102358911255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5